RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 SFPQP23246 707 aaKnown RBP eCLIP19.14■□□□□ 0.65
VPS54-201ENST00000272322 TOB1P50616 345 aaPredicted RBP19.14■□□□□ 0.65
VPS54-201ENST00000272322 EARS2Q5JPH6 523 aaKnown RBP19.14■□□□□ 0.65
VPS54-201ENST00000272322 FANCBQ8NB91 859 aa19.14■□□□□ 0.65
VPS54-201ENST00000272322 DHX58Q96C10 678 aa19.14■□□□□ 0.65
VPS54-201ENST00000272322 C8orf37Q96NL8 207 aa19.14■□□□□ 0.65
VPS54-201ENST00000272322 ZNF174Q15697 407 aa19.14■□□□□ 0.65
VPS54-201ENST00000272322 ATL3Q6DD88 541 aa19.14■□□□□ 0.65
VPS54-201ENST00000272322 METTL16Q86W50 562 aaKnown RBP19.14■□□□□ 0.65
VPS54-201ENST00000272322 CPLX3Q8WVH0 158 aa19.14■□□□□ 0.65
VPS54-201ENST00000272322 MRFAP1L1Q96HT8 127 aa19.14■□□□□ 0.65
VPS54-201ENST00000272322 NLRP12P59046 1061 aa19.13■□□□□ 0.65
VPS54-201ENST00000272322 PTPAQ15257 358 aa19.13■□□□□ 0.65
VPS54-201ENST00000272322 PRDX5P30044 214 aa19.13■□□□□ 0.65
VPS54-201ENST00000272322 ARMCX5Q6P1M9 558 aa19.13■□□□□ 0.65
VPS54-201ENST00000272322 JMYQ8N9B5 988 aa19.13■□□□□ 0.65
VPS54-201ENST00000272322 NTSR2O95665 410 aa19.13■□□□□ 0.65
VPS54-201ENST00000272322 CCZ1BP86790 482 aa19.13■□□□□ 0.65
VPS54-201ENST00000272322 CCZ1P86791 482 aaPredicted RBP19.13■□□□□ 0.65
VPS54-201ENST00000272322 EPSTI1Q96J88 318 aa19.13■□□□□ 0.65
VPS54-201ENST00000272322 KRT23Q9C075 422 aa19.13■□□□□ 0.65
VPS54-201ENST00000272322 TJP1Q07157 1748 aa19.12■□□□□ 0.65
VPS54-201ENST00000272322 PKD1L3Q7Z443 1732 aa19.12■□□□□ 0.65
VPS54-201ENST00000272322 WNT7AO00755 349 aa19.12■□□□□ 0.65
VPS54-201ENST00000272322 SYT10Q6XYQ8 523 aa19.12■□□□□ 0.65
VPS54-201ENST00000272322 ARHGAP30Q7Z6I6 1101 aaPredicted RBP19.12■□□□□ 0.65
VPS54-201ENST00000272322 TXNRD3Q86VQ6 643 aa19.12■□□□□ 0.65
VPS54-201ENST00000272322 TPM4P67936 248 aa19.12■□□□□ 0.65
VPS54-201ENST00000272322 OLFM4Q6UX06 510 aa19.12■□□□□ 0.65
VPS54-201ENST00000272322 CAVIN4Q5BKX8 364 aa19.12■□□□□ 0.65
VPS54-201ENST00000272322 TBC1D9BQ66K14 1250 aa19.12■□□□□ 0.65
VPS54-201ENST00000272322 MAP3K14Q99558 947 aa19.12■□□□□ 0.65
VPS54-201ENST00000272322 ZNF215Q9UL58 517 aaPredicted RBP19.12■□□□□ 0.65
VPS54-201ENST00000272322 NCAPHQ15003 741 aa19.11■□□□□ 0.65
VPS54-201ENST00000272322 IFIT1BQ5T764 474 aaKnown RBP19.11■□□□□ 0.65
VPS54-201ENST00000272322 KRI1Q8N9T8 703 aaKnown RBP19.11■□□□□ 0.65
VPS54-201ENST00000272322 CAVIN2O95810 425 aa19.11■□□□□ 0.65
VPS54-201ENST00000272322 EEF2KMTQ96G04 330 aa19.11■□□□□ 0.65
VPS54-201ENST00000272322 CDC5LQ99459 802 aaKnown RBP19.11■□□□□ 0.65
VPS54-201ENST00000272322 MAPK8IP1Q9UQF2 711 aa19.11■□□□□ 0.65
VPS54-201ENST00000272322 BMP6P22004 513 aa19.1■□□□□ 0.65
VPS54-201ENST00000272322 CRACR2BQ8N4Y2 399 aaPredicted RBP19.1■□□□□ 0.65
VPS54-201ENST00000272322 PLIN2Q99541 437 aa19.1■□□□□ 0.65
VPS54-201ENST00000272322 CSRNP2Q9H175 543 aa19.1■□□□□ 0.65
VPS54-201ENST00000272322 MINPP1Q9UNW1 487 aa19.1■□□□□ 0.65
VPS54-201ENST00000272322 MMP1P03956 469 aa19.1■□□□□ 0.65
VPS54-201ENST00000272322 ENAHQ8N8S7 591 aaPredicted RBP19.1■□□□□ 0.65
VPS54-201ENST00000272322 LINC00116Q8NCU8 138 aa19.1■□□□□ 0.65
VPS54-201ENST00000272322 FMNL1O95466 1100 aaPredicted RBP19.09■□□□□ 0.65
VPS54-201ENST00000272322 ADKP55263 362 aaKnown RBP19.09■□□□□ 0.65
VPS54-201ENST00000272322 SARM1Q6SZW1 724 aa19.09■□□□□ 0.65
VPS54-201ENST00000272322 KRBA2Q6ZNG9 492 aa19.09■□□□□ 0.65
VPS54-201ENST00000272322 NBPF5PQ86XG9 351 aaPredicted RBP19.09■□□□□ 0.65
VPS54-201ENST00000272322 ESR2Q92731 530 aa19.09■□□□□ 0.65
VPS54-201ENST00000272322 CPVLQ9H3G5 476 aa19.09■□□□□ 0.65
VPS54-201ENST00000272322 CNNM2Q9H8M5 875 aa19.09■□□□□ 0.65
VPS54-201ENST00000272322 IFNAR1P17181 557 aa19.09■□□□□ 0.65
VPS54-201ENST00000272322 NGLY1Q96IV0 654 aa19.09■□□□□ 0.65
VPS54-201ENST00000272322 FAM84BQ96KN1 310 aaPredicted RBP19.09■□□□□ 0.65
VPS54-201ENST00000272322 ADAMTS3O15072 1205 aa19.09■□□□□ 0.65
VPS54-201ENST00000272322 SGMS1Q86VZ5 419 aa19.09■□□□□ 0.65
VPS54-201ENST00000272322 RASGRP4Q8TDF6 673 aa19.09■□□□□ 0.65
VPS54-201ENST00000272322 GNL3LQ9NVN8 582 aaKnown RBP19.09■□□□□ 0.65
VPS54-201ENST00000272322 NWD2Q9ULI1 1742 aa19.09■□□□□ 0.65
VPS54-201ENST00000272322 GNPATO15228 680 aa19.08■□□□□ 0.65
VPS54-201ENST00000272322 LIFRP42702 1097 aa19.08■□□□□ 0.65
VPS54-201ENST00000272322 NCBP1Q09161 790 aaKnown RBP19.08■□□□□ 0.65
VPS54-201ENST00000272322 CCAR2Q8N163 923 aaKnown RBP19.08■□□□□ 0.65
VPS54-201ENST00000272322 LRRN4CLQ8ND94 238 aa19.08■□□□□ 0.65
VPS54-201ENST00000272322 SAMSN1Q9NSI8 373 aaKnown RBP19.08■□□□□ 0.65
VPS54-201ENST00000272322 VWA3AA6NCI4 1184 aa19.08■□□□□ 0.64
VPS54-201ENST00000272322 FMR1Q06787 632 aaKnown RBP eCLIP19.08■□□□□ 0.64
VPS54-201ENST00000272322 FBXL16Q8N461 479 aa19.08■□□□□ 0.64
VPS54-201ENST00000272322 SHISA4Q96DD7 197 aa19.08■□□□□ 0.64
VPS54-201ENST00000272322 BLZF1Q9H2G9 400 aa19.08■□□□□ 0.64
VPS54-201ENST00000272322 E4F1Q66K89 784 aaPredicted RBP19.08■□□□□ 0.64
VPS54-201ENST00000272322 ZNF384Q8TF68 577 aa19.08■□□□□ 0.64
VPS54-201ENST00000272322 NFE2L3Q9Y4A8 694 aa19.08■□□□□ 0.64
VPS54-201ENST00000272322 ABCC12Q96J65 1359 aa19.07■□□□□ 0.64
VPS54-201ENST00000272322 AMIGO3Q86WK7 504 aa19.07■□□□□ 0.64
VPS54-201ENST00000272322 DYNLL2Q96FJ2 89 aa19.07■□□□□ 0.64
VPS54-201ENST00000272322 MYL5Q02045 173 aa19.07■□□□□ 0.64
VPS54-201ENST00000272322 ANKIB1Q9P2G1 1089 aa19.07■□□□□ 0.64
VPS54-201ENST00000272322 DNAI1Q9UI46 699 aa19.07■□□□□ 0.64
VPS54-201ENST00000272322 LMTK3Q96Q04 1460 aa19.07■□□□□ 0.64
VPS54-201ENST00000272322 SMTNL1A8MU46 457 aa19.06■□□□□ 0.64
VPS54-201ENST00000272322 DIXDC1Q155Q3 683 aa19.06■□□□□ 0.64
VPS54-201ENST00000272322 PARP10Q53GL7 1025 aa19.06■□□□□ 0.64
VPS54-201ENST00000272322 RESP18Q5W5W9 173 aa19.06■□□□□ 0.64
VPS54-201ENST00000272322 RASGRP2Q7LDG7 609 aa19.06■□□□□ 0.64
VPS54-201ENST00000272322 ZNF512BQ96KM6 892 aaPredicted RBP19.06■□□□□ 0.64
VPS54-201ENST00000272322 MCM9Q9NXL9 1143 aa19.06■□□□□ 0.64
VPS54-201ENST00000272322 TOGARAM1Q9Y4F4 1720 aa19.06■□□□□ 0.64
VPS54-201ENST00000272322 USP17L8P0C7I0 530 aa19.06■□□□□ 0.64
VPS54-201ENST00000272322 TOP1P11387 765 aaKnown RBP19.06■□□□□ 0.64
VPS54-201ENST00000272322 MCM7P33993 719 aa19.06■□□□□ 0.64
VPS54-201ENST00000272322 GPKOWQ92917 476 aaPredicted RBP eCLIP19.06■□□□□ 0.64
VPS54-201ENST00000272322 TSPY2A6NKD2 308 aa19.06■□□□□ 0.64
VPS54-201ENST00000272322 MECOMQ03112 1051 aa19.06■□□□□ 0.64
VPS54-201ENST00000272322 ELF2Q15723 593 aa19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms