RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 RTN1Q16799 776 aa19.37■□□□□ 0.69
CCDC40-201ENST00000269318 SH3RF3Q8TEJ3 882 aaPredicted RBP19.37■□□□□ 0.69
CCDC40-201ENST00000269318 RTFDC1Q9BY42 306 aaPredicted RBP19.37■□□□□ 0.69
CCDC40-201ENST00000269318 PARP3Q9Y6F1 533 aa19.37■□□□□ 0.69
CCDC40-201ENST00000269318 MYH2Q9UKX2 1941 aa19.37■□□□□ 0.69
CCDC40-201ENST00000269318 DLEC1Q9Y238 1755 aa19.36■□□□□ 0.69
CCDC40-201ENST00000269318 FMNL1O95466 1100 aaPredicted RBP19.36■□□□□ 0.69
CCDC40-201ENST00000269318 LDHCP07864 332 aa19.36■□□□□ 0.69
CCDC40-201ENST00000269318 PDE6BP35913 854 aa19.36■□□□□ 0.69
CCDC40-201ENST00000269318 BRAPQ7Z569 592 aa19.36■□□□□ 0.69
CCDC40-201ENST00000269318 FAM205AQ6ZU69 1335 aa19.36■□□□□ 0.69
CCDC40-201ENST00000269318 GOLGA6L4A6NEF3 574 aa19.35■□□□□ 0.69
CCDC40-201ENST00000269318 KIF28PB7ZC32 967 aa19.35■□□□□ 0.69
CCDC40-201ENST00000269318 BAG3O95817 575 aa19.35■□□□□ 0.69
CCDC40-201ENST00000269318 CEBPZQ03701 1054 aaKnown RBP19.35■□□□□ 0.69
CCDC40-201ENST00000269318 NBPF11Q86T75 865 aa19.35■□□□□ 0.69
CCDC40-201ENST00000269318 FANCBQ8NB91 859 aa19.35■□□□□ 0.69
CCDC40-201ENST00000269318 MCM9Q9NXL9 1143 aa19.35■□□□□ 0.69
CCDC40-201ENST00000269318 USP17L8P0C7I0 530 aa19.35■□□□□ 0.69
CCDC40-201ENST00000269318 SSRP1Q08945 709 aaKnown RBP19.35■□□□□ 0.69
CCDC40-201ENST00000269318 FUCA2Q9BTY2 467 aa19.35■□□□□ 0.69
CCDC40-201ENST00000269318 RTEL1Q9NZ71 1219 aa19.35■□□□□ 0.69
CCDC40-201ENST00000269318 CCDC196A0A1B0GTZ2 297 aa19.34■□□□□ 0.69
CCDC40-201ENST00000269318 UBE2Q2LH0YL09 131 aa19.34■□□□□ 0.69
CCDC40-201ENST00000269318 SLC3A2P08195 630 aaKnown RBP19.34■□□□□ 0.69
CCDC40-201ENST00000269318 ALDH1B1P30837 517 aa19.34■□□□□ 0.69
CCDC40-201ENST00000269318 C12orf60Q5U649 245 aa19.34■□□□□ 0.69
CCDC40-201ENST00000269318 MSL1Q68DK7 614 aa19.34■□□□□ 0.69
CCDC40-201ENST00000269318 KRT40Q6A162 431 aa19.34■□□□□ 0.69
CCDC40-201ENST00000269318 POTEAQ6S8J7 498 aa19.34■□□□□ 0.69
CCDC40-201ENST00000269318 IQCA1Q86XH1 822 aa19.34■□□□□ 0.69
CCDC40-201ENST00000269318 TBC1D22AQ8WUA7 517 aa19.34■□□□□ 0.69
CCDC40-201ENST00000269318 SLC26A6Q9BXS9 759 aa19.34■□□□□ 0.69
CCDC40-201ENST00000269318 ROBO3Q96MS0 1386 aa19.34■□□□□ 0.69
CCDC40-201ENST00000269318 GPR75-ASB3A0A0A6YYF3 556 aa19.33■□□□□ 0.69
CCDC40-201ENST00000269318 USP5P45974 858 aa19.33■□□□□ 0.69
CCDC40-201ENST00000269318 PPP2R5BQ15173 497 aa19.33■□□□□ 0.69
CCDC40-201ENST00000269318 MFSD14BQ5SR56 506 aa19.33■□□□□ 0.69
CCDC40-201ENST00000269318 MYSM1Q5VVJ2 828 aa19.33■□□□□ 0.69
CCDC40-201ENST00000269318 CERS3Q8IU89 383 aa19.33■□□□□ 0.69
CCDC40-201ENST00000269318 FAM163AQ96GL9 167 aaPredicted RBP19.33■□□□□ 0.69
CCDC40-201ENST00000269318 MASTLQ96GX5 879 aa19.33■□□□□ 0.69
CCDC40-201ENST00000269318 DACT1Q9NYF0 836 aa19.33■□□□□ 0.69
CCDC40-201ENST00000269318 POLR3DP05423 398 aaPredicted RBP19.33■□□□□ 0.68
CCDC40-201ENST00000269318 IFIT1BQ5T764 474 aaKnown RBP19.33■□□□□ 0.68
CCDC40-201ENST00000269318 OLFM4Q6UX06 510 aa19.33■□□□□ 0.68
CCDC40-201ENST00000269318 CRACR2BQ8N4Y2 399 aaPredicted RBP19.33■□□□□ 0.68
CCDC40-201ENST00000269318 PPP1R9BQ96SB3 815 aa19.33■□□□□ 0.68
CCDC40-201ENST00000269318 COA1Q9GZY4 146 aa19.33■□□□□ 0.68
CCDC40-201ENST00000269318 PDE4BQ07343 736 aa19.32■□□□□ 0.68
CCDC40-201ENST00000269318 MPNDQ8N594 471 aa19.32■□□□□ 0.68
CCDC40-201ENST00000269318 BICD2Q8TD16 824 aa19.32■□□□□ 0.68
CCDC40-201ENST00000269318 NUP133Q8WUM0 1156 aa19.32■□□□□ 0.68
CCDC40-201ENST00000269318 NOL10Q9BSC4 688 aaKnown RBP19.32■□□□□ 0.68
CCDC40-201ENST00000269318 NUP62CLQ9H1M0 184 aa19.32■□□□□ 0.68
CCDC40-201ENST00000269318 ANO8Q9HCE9 1232 aaPredicted RBP19.32■□□□□ 0.68
CCDC40-201ENST00000269318 DDX19AQ9NUU7 478 aaKnown RBP19.32■□□□□ 0.68
CCDC40-201ENST00000269318 POLR3EQ9NVU0 708 aa19.32■□□□□ 0.68
CCDC40-201ENST00000269318 GAKO14976 1311 aa19.32■□□□□ 0.68
CCDC40-201ENST00000269318 NR1I2O75469 434 aa19.32■□□□□ 0.68
CCDC40-201ENST00000269318 GUCY1A2P33402 732 aa19.32■□□□□ 0.68
CCDC40-201ENST00000269318 BTDP43251 543 aa19.32■□□□□ 0.68
CCDC40-201ENST00000269318 NT5C2P49902 561 aa19.32■□□□□ 0.68
CCDC40-201ENST00000269318 TROAPQ12815 778 aa19.32■□□□□ 0.68
CCDC40-201ENST00000269318 LINC00301Q8NCQ3 95 aa19.32■□□□□ 0.68
CCDC40-201ENST00000269318 NAV1Q8NEY1 1877 aa19.32■□□□□ 0.68
CCDC40-201ENST00000269318 WASF1Q92558 559 aa19.32■□□□□ 0.68
CCDC40-201ENST00000269318 CCDC173Q0VFZ6 552 aa19.31■□□□□ 0.68
CCDC40-201ENST00000269318 TRIM22Q8IYM9 498 aa19.31■□□□□ 0.68
CCDC40-201ENST00000269318 RNF214Q8ND24 703 aa19.31■□□□□ 0.68
CCDC40-201ENST00000269318 TGFBRAP1Q8WUH2 860 aa19.31■□□□□ 0.68
CCDC40-201ENST00000269318 CAMKK2Q96RR4 588 aa19.31■□□□□ 0.68
CCDC40-201ENST00000269318 CLIC4Q9Y696 253 aa19.31■□□□□ 0.68
CCDC40-201ENST00000269318 DDX60LQ5H9U9 1706 aaKnown RBP19.31■□□□□ 0.68
CCDC40-201ENST00000269318 RIMBP2O15034 1052 aa19.3■□□□□ 0.68
CCDC40-201ENST00000269318 YEATS4O95619 227 aa19.3■□□□□ 0.68
CCDC40-201ENST00000269318 U2AF2P26368 475 aaKnown RBP eCLIP19.3■□□□□ 0.684e-6■■□□□ 13.2
CCDC40-201ENST00000269318 FAM47AQ5JRC9 791 aa19.3■□□□□ 0.68
CCDC40-201ENST00000269318 RBM43Q6ZSC3 357 aaKnown RBP19.3■□□□□ 0.68
CCDC40-201ENST00000269318 CATIPQ7Z7H3 387 aa19.3■□□□□ 0.68
CCDC40-201ENST00000269318 CLSTN2Q9H4D0 955 aa19.3■□□□□ 0.68
CCDC40-201ENST00000269318 CDK5RAP2Q96SN8 1893 aa19.3■□□□□ 0.68
CCDC40-201ENST00000269318 NMT2O60551 498 aa19.3■□□□□ 0.68
CCDC40-201ENST00000269318 DDAH1O94760 285 aa19.3■□□□□ 0.68
CCDC40-201ENST00000269318 DEXIO95424 95 aa19.3■□□□□ 0.68
CCDC40-201ENST00000269318 RHBDL3P58872 404 aa19.3■□□□□ 0.68
CCDC40-201ENST00000269318 GTF2IP78347 998 aa19.3■□□□□ 0.68
CCDC40-201ENST00000269318 FUT2Q10981 343 aa19.3■□□□□ 0.68
CCDC40-201ENST00000269318 SLC15A2Q16348 729 aa19.3■□□□□ 0.68
CCDC40-201ENST00000269318 DPP8Q6V1X1 898 aaPredicted RBP19.3■□□□□ 0.68
CCDC40-201ENST00000269318 CMTR1Q8N1G2 835 aaKnown RBP19.3■□□□□ 0.68
CCDC40-201ENST00000269318 TRIM29Q14134 588 aa19.29■□□□□ 0.68
CCDC40-201ENST00000269318 EZH2Q15910 746 aaKnown RBP19.29■□□□□ 0.68
CCDC40-201ENST00000269318 SLF2Q8IX21 1173 aa19.29■□□□□ 0.68
CCDC40-201ENST00000269318 ANP32BQ92688 251 aaKnown RBP19.29■□□□□ 0.68
CCDC40-201ENST00000269318 RNF26Q9BY78 433 aaPredicted RBP19.29■□□□□ 0.68
CCDC40-201ENST00000269318 ZC3H12CQ9C0D7 883 aaKnown RBP19.29■□□□□ 0.68
CCDC40-201ENST00000269318 CALM1P0DP23 149 aa19.28■□□□□ 0.68
CCDC40-201ENST00000269318 CALM2P0DP24 149 aa19.28■□□□□ 0.68
CCDC40-201ENST00000269318 CALM3P0DP25 149 aa19.28■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms