RNA–Protein interactions for RNA: ENST00000268049.11

USP3-201, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-201ENST00000268049 PARP1P09874 1014 aaKnown RBP8.83□□□□□ -1
USP3-201ENST00000268049 WTAPQ15007 396 aa8.83□□□□□ -1
USP3-201ENST00000268049 GOLIM4O00461 696 aa8.83□□□□□ -1
USP3-201ENST00000268049 NEMFO60524 1076 aa8.83□□□□□ -1
USP3-201ENST00000268049 RPS6KA4O75676 772 aa8.83□□□□□ -1
USP3-201ENST00000268049 CCDC175P0C221 793 aa8.83□□□□□ -1
USP3-201ENST00000268049 ZSCAN20P17040 1043 aaPredicted RBP8.83□□□□□ -1
USP3-201ENST00000268049 NCOA7Q8NI08 942 aa8.83□□□□□ -1
USP3-201ENST00000268049 SLU7O95391 586 aaKnown RBP8.82□□□□□ -1
USP3-201ENST00000268049 CCDC172P0C7W6 258 aa8.82□□□□□ -1
USP3-201ENST00000268049 GNA11P29992 359 aa8.82□□□□□ -1
USP3-201ENST00000268049 NAPAP54920 295 aa8.82□□□□□ -1
USP3-201ENST00000268049 ATP8B2P98198 1209 aa8.82□□□□□ -1
USP3-201ENST00000268049 MFSD14BQ5SR56 506 aa8.82□□□□□ -1
USP3-201ENST00000268049 TRMT1LQ7Z2T5 733 aaKnown RBP8.82□□□□□ -1
USP3-201ENST00000268049 CEP57Q86XR8 500 aa8.82□□□□□ -1
USP3-201ENST00000268049 EXOC8Q8IYI6 725 aa8.82□□□□□ -1
USP3-201ENST00000268049 ZNF341Q9BYN7 854 aa8.82□□□□□ -1
USP3-201ENST00000268049 RIOK3O14730 519 aaKnown RBP8.82□□□□□ -1
USP3-201ENST00000268049 TAF1CQ15572 869 aaPredicted RBP8.82□□□□□ -1
USP3-201ENST00000268049 FAM160B1Q5W0V3 765 aa8.82□□□□□ -1
USP3-201ENST00000268049 ERO1AQ96HE7 468 aa8.82□□□□□ -1
USP3-201ENST00000268049 MYCBPQ99417 103 aaPredicted RBP8.82□□□□□ -1
USP3-201ENST00000268049 PARK7Q99497 189 aaKnown RBP8.82□□□□□ -1
USP3-201ENST00000268049 UPF3BQ9BZI7 483 aaKnown RBP8.82□□□□□ -1
USP3-201ENST00000268049 USP25Q9UHP3 1055 aa8.82□□□□□ -1
USP3-201ENST00000268049 USP17L3A6NCW0 530 aa8.82□□□□□ -1
USP3-201ENST00000268049 USP17L4A6NCW7 530 aa8.82□□□□□ -1
USP3-201ENST00000268049 BMP15O95972 392 aa8.82□□□□□ -1
USP3-201ENST00000268049 CASTP20810 708 aaKnown RBP8.82□□□□□ -1
USP3-201ENST00000268049 SEPT6Q14141 434 aa8.82□□□□□ -1
USP3-201ENST00000268049 MAP3K11Q16584 847 aa8.82□□□□□ -1
USP3-201ENST00000268049 C20orf194Q5TEA3 1177 aa8.82□□□□□ -1
USP3-201ENST00000268049 NUDT18Q6ZVK8 323 aa8.82□□□□□ -1
USP3-201ENST00000268049 USP17L1Q7RTZ2 530 aa8.82□□□□□ -1
USP3-201ENST00000268049 HOMEZQ8IX15 550 aa8.82□□□□□ -1
USP3-201ENST00000268049 RHPN1Q8TCX5 695 aa8.82□□□□□ -1
USP3-201ENST00000268049 EVI5LQ96CN4 794 aa8.82□□□□□ -1
USP3-201ENST00000268049 JPH2Q9BR39 696 aaPredicted RBP8.82□□□□□ -1
USP3-201ENST00000268049 BICC1Q9H694 974 aaKnown RBP8.82□□□□□ -1
USP3-201ENST00000268049 LRRC7Q96NW7 1537 aa8.82□□□□□ -1
USP3-201ENST00000268049 TNPO2O14787 897 aaKnown RBP8.82□□□□□ -1
USP3-201ENST00000268049 MKRN3Q13064 507 aaKnown RBP8.82□□□□□ -1
USP3-201ENST00000268049 ZYXQ15942 572 aaKnown RBP8.82□□□□□ -1
USP3-201ENST00000268049 HEG1Q9ULI3 1381 aa8.81□□□□□ -1
USP3-201ENST00000268049 LMNB1P20700 586 aa8.81□□□□□ -1
USP3-201ENST00000268049 GCKRQ14397 625 aa8.81□□□□□ -1
USP3-201ENST00000268049 ZNF569Q5MCW4 686 aa8.81□□□□□ -1
USP3-201ENST00000268049 ATG3Q9NT62 314 aa8.81□□□□□ -1
USP3-201ENST00000268049 PUF60Q9UHX1 559 aaKnown RBP8.81□□□□□ -1
USP3-201ENST00000268049 ZNF215Q9UL58 517 aaPredicted RBP8.81□□□□□ -1
USP3-201ENST00000268049 XPOTO43592 962 aaKnown RBP8.81□□□□□ -1
USP3-201ENST00000268049 C21orf2O43822 256 aa8.81□□□□□ -1
USP3-201ENST00000268049 USP17L8P0C7I0 530 aa8.81□□□□□ -1
USP3-201ENST00000268049 MYCLP12524 364 aaPredicted RBP8.81□□□□□ -1
USP3-201ENST00000268049 ELF1P32519 619 aa8.81□□□□□ -1
USP3-201ENST00000268049 SMTNP53814 917 aa8.81□□□□□ -1
USP3-201ENST00000268049 HUNKP57058 714 aa8.81□□□□□ -1
USP3-201ENST00000268049 STRN3Q13033 797 aa8.81□□□□□ -1
USP3-201ENST00000268049 GLG1Q92896 1179 aa8.81□□□□□ -1
USP3-201ENST00000268049 RSRC1Q96IZ7 334 aaKnown RBP8.81□□□□□ -1
USP3-201ENST00000268049 GINS2Q9Y248 185 aa8.81□□□□□ -1
USP3-201ENST00000268049 MROH2AA6NES4 1674 aa8.81□□□□□ -1
USP3-201ENST00000268049 BCAMP50895 628 aa8.81□□□□□ -1
USP3-201ENST00000268049 SP4Q02446 784 aa8.81□□□□□ -1
USP3-201ENST00000268049 NAA25Q14CX7 972 aa8.81□□□□□ -1
USP3-201ENST00000268049 CEP135Q66GS9 1140 aa8.81□□□□□ -1
USP3-201ENST00000268049 PLEKHF1Q96S99 279 aa8.81□□□□□ -1
USP3-201ENST00000268049 DPYSL4O14531 572 aa8.81□□□□□ -1
USP3-201ENST00000268049 CAPN2P17655 700 aa8.81□□□□□ -1
USP3-201ENST00000268049 DOK7Q18PE1 504 aa8.81□□□□□ -1
USP3-201ENST00000268049 RPS6KC1Q96S38 1066 aa8.81□□□□□ -1
USP3-201ENST00000268049 CLIP2Q9UDT6 1046 aa8.81□□□□□ -1
USP3-201ENST00000268049 PA2G4Q9UQ80 394 aaKnown RBP8.81□□□□□ -1
USP3-201ENST00000268049 MROH1Q8NDA8 1641 aa8.81□□□□□ -1
USP3-201ENST00000268049 TYW5A2RUC4 315 aaKnown RBP8.8□□□□□ -1
USP3-201ENST00000268049 KIF5CO60282 957 aa8.8□□□□□ -1
USP3-201ENST00000268049 ATF7P17544 494 aaPredicted RBP8.8□□□□□ -1
USP3-201ENST00000268049 NOLC1Q14978 699 aaKnown RBP eCLIP8.8□□□□□ -1
USP3-201ENST00000268049 CCDC183Q5T5S1 534 aa8.8□□□□□ -1
USP3-201ENST00000268049 SYNE4Q8N205 404 aa8.8□□□□□ -1
USP3-201ENST00000268049 CEP83Q9Y592 693 aa8.8□□□□□ -1
USP3-201ENST00000268049 SMTNL1A8MU46 457 aa8.8□□□□□ -1
USP3-201ENST00000268049 VIMP08670 466 aaKnown RBP8.8□□□□□ -1
USP3-201ENST00000268049 FCGRTP55899 365 aa8.8□□□□□ -1
USP3-201ENST00000268049 TCP10Q12799 353 aa8.8□□□□□ -1
USP3-201ENST00000268049 KIF4BQ2VIQ3 1234 aa8.8□□□□□ -1
USP3-201ENST00000268049 FKBP15Q5T1M5 1219 aa8.8□□□□□ -1
USP3-201ENST00000268049 CFAP58Q5T655 872 aa8.8□□□□□ -1
USP3-201ENST00000268049 SPECC1LQ69YQ0 1117 aa8.8□□□□□ -1
USP3-201ENST00000268049 CPXCR1Q8N123 301 aa8.8□□□□□ -1
USP3-201ENST00000268049 ALS2CR12Q96Q35 445 aa8.8□□□□□ -1
USP3-201ENST00000268049 SWAP70Q9UH65 585 aa8.8□□□□□ -1
USP3-201ENST00000268049 TRPC6Q9Y210 931 aa8.8□□□□□ -1
USP3-201ENST00000268049 SLC1A4P43007 532 aa8.8□□□□□ -1
USP3-201ENST00000268049 KIAA0825Q8IV33 1275 aa8.8□□□□□ -1
USP3-201ENST00000268049 MARCH10Q8NA82 808 aaPredicted RBP8.8□□□□□ -1
USP3-201ENST00000268049 CEP63Q96MT8 703 aa8.8□□□□□ -1
USP3-201ENST00000268049 ADPGKQ9BRR6 497 aa8.8□□□□□ -1
USP3-201ENST00000268049 EXOC7Q9UPT5 735 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms