RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 ECM29Q5VYK3 1845 aa11.93□□□□□ -0.5
VPS41-201ENST00000265745 TBC1D12O60347 775 aa11.93□□□□□ -0.5
VPS41-201ENST00000265745 CYP2E1P05181 493 aaPredicted RBP11.93□□□□□ -0.5
VPS41-201ENST00000265745 LACTBP83111 547 aaPredicted RBP11.93□□□□□ -0.5
VPS41-201ENST00000265745 GPAT2Q6NUI2 795 aa11.93□□□□□ -0.5
VPS41-201ENST00000265745 EAF2Q96CJ1 260 aaPredicted RBP11.93□□□□□ -0.5
VPS41-201ENST00000265745 DBNLQ9UJU6 430 aaKnown RBP11.93□□□□□ -0.5
VPS41-201ENST00000265745 AFG3L2Q9Y4W6 797 aa11.93□□□□□ -0.5
VPS41-201ENST00000265745 IGSF3O75054 1194 aa11.92□□□□□ -0.5
VPS41-201ENST00000265745 PPP4CP60510 307 aa11.92□□□□□ -0.5
VPS41-201ENST00000265745 NAA16Q6N069 864 aaPredicted RBP11.92□□□□□ -0.5
VPS41-201ENST00000265745 ARHGAP39Q9C0H5 1083 aa11.92□□□□□ -0.5
VPS41-201ENST00000265745 CCDC8Q9H0W5 538 aaPredicted RBP11.92□□□□□ -0.5
VPS41-201ENST00000265745 OSBPL5Q9H0X9 879 aaPredicted RBP11.92□□□□□ -0.5
VPS41-201ENST00000265745 ADGRA2Q96PE1 1338 aa11.91□□□□□ -0.5
VPS41-201ENST00000265745 A0A0G2JLL6 359 aaPredicted RBP11.91□□□□□ -0.5
VPS41-201ENST00000265745 BAG3O95817 575 aa11.91□□□□□ -0.5
VPS41-201ENST00000265745 GNRH1P01148 92 aa11.91□□□□□ -0.5
VPS41-201ENST00000265745 MS4A1P11836 297 aa11.91□□□□□ -0.5
VPS41-201ENST00000265745 ZAP70P43403 619 aa11.91□□□□□ -0.5
VPS41-201ENST00000265745 KIF22Q14807 665 aa11.91□□□□□ -0.5
VPS41-201ENST00000265745 FASTKD5Q7L8L6 764 aaKnown RBP11.91□□□□□ -0.5
VPS41-201ENST00000265745 PRRT2Q7Z6L0 340 aaPredicted RBP11.91□□□□□ -0.5
VPS41-201ENST00000265745 TEX11Q8IYF3 940 aa11.91□□□□□ -0.5
VPS41-201ENST00000265745 ZNF579Q8NAF0 562 aaKnown RBP11.91□□□□□ -0.5
VPS41-201ENST00000265745 SH3RF3Q8TEJ3 882 aaPredicted RBP11.91□□□□□ -0.5
VPS41-201ENST00000265745 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.91□□□□□ -0.5
VPS41-201ENST00000265745 TLR7Q9NYK1 1049 aaKnown RBP11.91□□□□□ -0.5
VPS41-201ENST00000265745 CPA4Q9UI42 421 aa11.91□□□□□ -0.5
VPS41-201ENST00000265745 PTCH2Q9Y6C5 1203 aa11.91□□□□□ -0.5
VPS41-201ENST00000265745 POTEFA5A3E0 1075 aa11.9□□□□□ -0.5
VPS41-201ENST00000265745 CYP2C8P10632 490 aa11.9□□□□□ -0.5
VPS41-201ENST00000265745 PLCG2P16885 1265 aa11.9□□□□□ -0.5
VPS41-201ENST00000265745 ADGRA1Q86SQ6 560 aa11.9□□□□□ -0.5
VPS41-201ENST00000265745 ERC1Q8IUD2 1116 aa11.9□□□□□ -0.5
VPS41-201ENST00000265745 ZNF333Q96JL9 665 aa11.9□□□□□ -0.5
VPS41-201ENST00000265745 PARK7Q99497 189 aaKnown RBP11.9□□□□□ -0.5
VPS41-201ENST00000265745 NOL10Q9BSC4 688 aaKnown RBP11.9□□□□□ -0.5
VPS41-201ENST00000265745 PIH1D3Q9NQM4 214 aaKnown RBP11.9□□□□□ -0.5
VPS41-201ENST00000265745 AATFQ9NY61 560 aaKnown RBP eCLIP11.9□□□□□ -0.5
VPS41-201ENST00000265745 EXOC6BQ9Y2D4 811 aa11.9□□□□□ -0.5
VPS41-201ENST00000265745 HTTP42858 3142 aa11.9□□□□□ -0.5
VPS41-201ENST00000265745 TRIM75PA6NK02 468 aa11.89□□□□□ -0.51
VPS41-201ENST00000265745 FAM196BA6NMK8 535 aa11.89□□□□□ -0.51
VPS41-201ENST00000265745 CTGFP29279 349 aa11.89□□□□□ -0.51
VPS41-201ENST00000265745 PSMC4P43686 418 aa11.89□□□□□ -0.51
VPS41-201ENST00000265745 RRP1BQ14684 758 aaKnown RBP11.89□□□□□ -0.51
VPS41-201ENST00000265745 SLC9C1Q4G0N8 1177 aa11.89□□□□□ -0.51
VPS41-201ENST00000265745 NBPF11Q86T75 865 aa11.89□□□□□ -0.51
VPS41-201ENST00000265745 TGFBRAP1Q8WUH2 860 aa11.89□□□□□ -0.51
VPS41-201ENST00000265745 DHX36Q9H2U1 1008 aaKnown RBP11.89□□□□□ -0.51
VPS41-201ENST00000265745 ZBTB40Q9NUA8 1239 aa11.89□□□□□ -0.51
VPS41-201ENST00000265745 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.89□□□□□ -0.51
VPS41-201ENST00000265745 PI4KBQ9UBF8 816 aa11.89□□□□□ -0.51
VPS41-201ENST00000265745 SLC45A1Q9Y2W3 748 aa11.89□□□□□ -0.51
VPS41-201ENST00000265745 BCRP11274 1271 aa11.88□□□□□ -0.51
VPS41-201ENST00000265745 CYP7A1P22680 504 aa11.88□□□□□ -0.51
VPS41-201ENST00000265745 CAP2P40123 477 aa11.88□□□□□ -0.51
VPS41-201ENST00000265745 PRMT2P55345 433 aa11.88□□□□□ -0.51
VPS41-201ENST00000265745 HSP90AB4PQ58FF6 505 aa11.88□□□□□ -0.51
VPS41-201ENST00000265745 CCDC84Q86UT8 332 aaPredicted RBP11.88□□□□□ -0.51
VPS41-201ENST00000265745 AACSQ86V21 672 aa11.88□□□□□ -0.51
VPS41-201ENST00000265745 METTL16Q86W50 562 aaKnown RBP11.88□□□□□ -0.51
VPS41-201ENST00000265745 SIRT2Q8IXJ6 389 aa11.88□□□□□ -0.51
VPS41-201ENST00000265745 RPAP2Q8IXW5 612 aaPredicted RBP11.88□□□□□ -0.51
VPS41-201ENST00000265745 RHPN1Q8TCX5 695 aa11.88□□□□□ -0.51
VPS41-201ENST00000265745 TRIM47Q96LD4 638 aa11.88□□□□□ -0.51
VPS41-201ENST00000265745 HERC5Q9UII4 1024 aaKnown RBP11.88□□□□□ -0.51
VPS41-201ENST00000265745 COG6Q9Y2V7 657 aa11.88□□□□□ -0.51
VPS41-201ENST00000265745 OTOFQ9HC10 1997 aa11.88□□□□□ -0.51
VPS41-201ENST00000265745 IDH1O75874 414 aaKnown RBP11.87□□□□□ -0.51
VPS41-201ENST00000265745 FMNL1O95466 1100 aaPredicted RBP11.87□□□□□ -0.51
VPS41-201ENST00000265745 PRKAR2AP13861 404 aaKnown RBP11.87□□□□□ -0.51
VPS41-201ENST00000265745 EN2P19622 333 aaPredicted RBP11.87□□□□□ -0.51
VPS41-201ENST00000265745 HOXD10P28358 340 aa11.87□□□□□ -0.51
VPS41-201ENST00000265745 SPP2Q13103 211 aa11.87□□□□□ -0.51
VPS41-201ENST00000265745 GADL1Q6ZQY3 521 aa11.87□□□□□ -0.51
VPS41-201ENST00000265745 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.87□□□□□ -0.51
VPS41-201ENST00000265745 FOXP4Q8IVH2 680 aaPredicted RBP11.87□□□□□ -0.51
VPS41-201ENST00000265745 MAPKAPK5Q8IW41 473 aa11.87□□□□□ -0.51
VPS41-201ENST00000265745 ZNF280CQ8ND82 737 aa11.87□□□□□ -0.51
VPS41-201ENST00000265745 TMEM106CQ9BVX2 250 aa11.87□□□□□ -0.51
VPS41-201ENST00000265745 ANTXR1Q9H6X2 564 aa11.87□□□□□ -0.51
VPS41-201ENST00000265745 SRRDQ9UH36 339 aa11.87□□□□□ -0.51
VPS41-201ENST00000265745 RCAN3Q9UKA8 241 aa11.87□□□□□ -0.51
VPS41-201ENST00000265745 PALD1Q9ULE6 856 aa11.87□□□□□ -0.51
VPS41-201ENST00000265745 DDX19BQ9UMR2 479 aa11.87□□□□□ -0.51
VPS41-201ENST00000265745 NDUFB9Q9Y6M9 179 aa11.87□□□□□ -0.51
VPS41-201ENST00000265745 COL2A1P02458 1487 aaPredicted RBP11.87□□□□□ -0.51
VPS41-201ENST00000265745 OSBPP22059 807 aa11.86□□□□□ -0.51
VPS41-201ENST00000265745 DYNLL1P63167 89 aaKnown RBP11.86□□□□□ -0.51
VPS41-201ENST00000265745 TMED8Q6PL24 325 aaPredicted RBP11.86□□□□□ -0.51
VPS41-201ENST00000265745 SH3TC2Q8TF17 1288 aa11.86□□□□□ -0.51
VPS41-201ENST00000265745 IL1RAPL2Q9NP60 686 aa11.86□□□□□ -0.51
VPS41-201ENST00000265745 AGTPBP1Q9UPW5 1226 aa11.86□□□□□ -0.51
VPS41-201ENST00000265745 GTF3C3Q9Y5Q9 886 aa11.86□□□□□ -0.51
VPS41-201ENST00000265745 FLT1P17948 1338 aa11.86□□□□□ -0.51
VPS41-201ENST00000265745 USP17L5A8MUK1 530 aa11.85□□□□□ -0.51
VPS41-201ENST00000265745 HMMRO75330 724 aa11.85□□□□□ -0.51
VPS41-201ENST00000265745 PPP1R37O75864 691 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms