RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 TSNARE1Q96NA8 513 aa12.05□□□□□ -0.48
CD44-201ENST00000263398 EYA3Q99504 573 aa12.05□□□□□ -0.48
CD44-201ENST00000263398 STAP2Q9UGK3 403 aa12.05□□□□□ -0.48
CD44-201ENST00000263398 A0A0D9SFI3 127 aa12.04□□□□□ -0.48
CD44-201ENST00000263398 GABPB1Q06547 395 aaPredicted RBP12.04□□□□□ -0.48
CD44-201ENST00000263398 GSTA5Q7RTV2 222 aa12.04□□□□□ -0.48
CD44-201ENST00000263398 SELENOSQ9BQE4 189 aa12.04□□□□□ -0.48
CD44-201ENST00000263398 XPO4Q9C0E2 1151 aaKnown RBP12.04□□□□□ -0.48
CD44-201ENST00000263398 PKP1Q13835 747 aa12.04□□□□□ -0.48
CD44-201ENST00000263398 AKNAD1Q5T1N1 836 aa12.04□□□□□ -0.48
CD44-201ENST00000263398 PLEKHF1Q96S99 279 aa12.04□□□□□ -0.48
CD44-201ENST00000263398 OSBPL3Q9H4L5 887 aa12.04□□□□□ -0.48
CD44-201ENST00000263398 TMEM110-MUSTN1A8MSY1 372 aa12.04□□□□□ -0.48
CD44-201ENST00000263398 EPB41P11171 864 aaKnown RBP12.04□□□□□ -0.48
CD44-201ENST00000263398 HAUS3Q68CZ6 603 aa12.04□□□□□ -0.48
CD44-201ENST00000263398 C8orf74Q6P047 294 aa12.04□□□□□ -0.48
CD44-201ENST00000263398 JAKMIP2Q96AA8 810 aa12.04□□□□□ -0.48
CD44-201ENST00000263398 USP28Q96RU2 1077 aa12.04□□□□□ -0.48
CD44-201ENST00000263398 NAP1L3Q99457 506 aaPredicted RBP12.04□□□□□ -0.48
CD44-201ENST00000263398 CDCA7Q9BWT1 371 aaPredicted RBP12.04□□□□□ -0.48
CD44-201ENST00000263398 NONOQ15233 471 aaKnown RBP eCLIP12.04□□□□□ -0.48
CD44-201ENST00000263398 BEND3Q5T5X7 828 aa12.04□□□□□ -0.48
CD44-201ENST00000263398 MSL1Q68DK7 614 aa12.04□□□□□ -0.48
CD44-201ENST00000263398 KRT25Q7Z3Z0 450 aa12.04□□□□□ -0.48
CD44-201ENST00000263398 SPATA5Q8NB90 893 aa12.04□□□□□ -0.48
CD44-201ENST00000263398 WDR66Q8TBY9 1149 aa12.04□□□□□ -0.48
CD44-201ENST00000263398 TPCN1Q9ULQ1 816 aa12.04□□□□□ -0.48
CD44-201ENST00000263398 FRMD4BQ9Y2L6 1034 aa12.04□□□□□ -0.48
CD44-201ENST00000263398 RGS12O14924 1447 aa12.04□□□□□ -0.48
CD44-201ENST00000263398 DNAJC10Q8IXB1 793 aa12.03□□□□□ -0.48
CD44-201ENST00000263398 GPATCH11Q8N954 259 aa12.03□□□□□ -0.48
CD44-201ENST00000263398 MROH5Q6ZUA9 1318 aa12.03□□□□□ -0.48
CD44-201ENST00000263398 TOM1O60784 492 aa12.03□□□□□ -0.48
CD44-201ENST00000263398 PFKFB2O60825 505 aa12.03□□□□□ -0.48
CD44-201ENST00000263398 GJC1P36383 396 aa12.03□□□□□ -0.48
CD44-201ENST00000263398 TXKP42681 527 aa12.03□□□□□ -0.48
CD44-201ENST00000263398 MTX1Q13505 466 aa12.03□□□□□ -0.48
CD44-201ENST00000263398 CCDC6Q16204 474 aa12.03□□□□□ -0.48
CD44-201ENST00000263398 CCDC84Q86UT8 332 aaPredicted RBP12.03□□□□□ -0.48
CD44-201ENST00000263398 BTG4Q9NY30 223 aa12.03□□□□□ -0.48
CD44-201ENST00000263398 KCNJ14Q9UNX9 436 aa12.03□□□□□ -0.48
CD44-201ENST00000263398 A6NNZ2 444 aa12.03□□□□□ -0.48
CD44-201ENST00000263398 MAGEA1P43355 309 aa12.03□□□□□ -0.48
CD44-201ENST00000263398 TUBB8Q3ZCM7 444 aa12.03□□□□□ -0.48
CD44-201ENST00000263398 SLC9C1Q4G0N8 1177 aa12.03□□□□□ -0.48
CD44-201ENST00000263398 CCDC50Q8IVM0 306 aa12.03□□□□□ -0.48
CD44-201ENST00000263398 SREK1Q8WXA9 508 aaKnown RBP12.03□□□□□ -0.48
CD44-201ENST00000263398 TAB2Q9NYJ8 693 aa12.03□□□□□ -0.48
CD44-201ENST00000263398 LRWD1Q9UFC0 647 aa12.03□□□□□ -0.48
CD44-201ENST00000263398 KDM5DQ9BY66 1539 aa12.03□□□□□ -0.48
CD44-201ENST00000263398 FAM135BQ49AJ0 1406 aa12.03□□□□□ -0.48
CD44-201ENST00000263398 NR1I2O75469 434 aa12.03□□□□□ -0.48
CD44-201ENST00000263398 ZBTB16Q05516 673 aa12.03□□□□□ -0.48
CD44-201ENST00000263398 CTDSPL2Q05D32 466 aa12.03□□□□□ -0.48
CD44-201ENST00000263398 TCIRG1Q13488 830 aa12.03□□□□□ -0.48
CD44-201ENST00000263398 GAS2L3Q86XJ1 694 aa12.03□□□□□ -0.48
CD44-201ENST00000263398 SECISBP2LQ93073 1101 aaKnown RBP12.03□□□□□ -0.48
CD44-201ENST00000263398 CEP83Q9Y592 693 aa12.03□□□□□ -0.48
CD44-201ENST00000263398 KDRP35968 1356 aa12.02□□□□□ -0.48
CD44-201ENST00000263398 TAF5LO75529 589 aa12.02□□□□□ -0.48
CD44-201ENST00000263398 AFAP1L1Q8TED9 768 aa12.02□□□□□ -0.48
CD44-201ENST00000263398 ZBTB9Q96C00 473 aa12.02□□□□□ -0.48
CD44-201ENST00000263398 CCDC114Q96M63 670 aa12.02□□□□□ -0.48
CD44-201ENST00000263398 NOX5Q96PH1 765 aa12.02□□□□□ -0.48
CD44-201ENST00000263398 B4DLN1 442 aa12.02□□□□□ -0.49
CD44-201ENST00000263398 CCNT1O60563 726 aaKnown RBP12.02□□□□□ -0.49
CD44-201ENST00000263398 PFKFB1P16118 471 aa12.02□□□□□ -0.49
CD44-201ENST00000263398 PPP1R7Q15435 360 aa12.02□□□□□ -0.49
CD44-201ENST00000263398 GPT2Q8TD30 523 aa12.02□□□□□ -0.49
CD44-201ENST00000263398 LZTS2Q9BRK4 669 aa12.02□□□□□ -0.49
CD44-201ENST00000263398 GPCPD1Q9NPB8 672 aa12.02□□□□□ -0.49
CD44-201ENST00000263398 GTF2A1P52655 376 aaPredicted RBP12.02□□□□□ -0.49
CD44-201ENST00000263398 SEL1L2Q5TEA6 688 aa12.02□□□□□ -0.49
CD44-201ENST00000263398 CCDC25Q86WR0 208 aa12.02□□□□□ -0.49
CD44-201ENST00000263398 MRFAP1L1Q96HT8 127 aa12.02□□□□□ -0.49
CD44-201ENST00000263398 SAP30BPQ9UHR5 308 aaKnown RBP12.02□□□□□ -0.49
CD44-201ENST00000263398 PRDM15P57071 1507 aaPredicted RBP12.02□□□□□ -0.49
CD44-201ENST00000263398 TSPOAP1O95153 1857 aa12.01□□□□□ -0.49
CD44-201ENST00000263398 SMIM23A6NLE4 172 aa12.01□□□□□ -0.49
CD44-201ENST00000263398 CCDC51Q96ER9 411 aa12.01□□□□□ -0.49
CD44-201ENST00000263398 HAUS7Q99871 368 aa12.01□□□□□ -0.49
CD44-201ENST00000263398 VEZTQ9HBM0 779 aa12.01□□□□□ -0.49
CD44-201ENST00000263398 SAMD15Q9P1V8 674 aa12.01□□□□□ -0.49
CD44-201ENST00000263398 RIMBP2O15034 1052 aa12.01□□□□□ -0.49
CD44-201ENST00000263398 GNPATO15228 680 aa12.01□□□□□ -0.49
CD44-201ENST00000263398 TRMT44Q8IYL2 757 aaKnown RBP12.01□□□□□ -0.49
CD44-201ENST00000263398 CNBD1Q8NA66 436 aa12.01□□□□□ -0.49
CD44-201ENST00000263398 MSANTD4Q8NCY6 345 aa12.01□□□□□ -0.49
CD44-201ENST00000263398 UBLCP1Q8WVY7 318 aaPredicted RBP12.01□□□□□ -0.49
CD44-201ENST00000263398 WWC3Q9ULE0 1092 aa12.01□□□□□ -0.49
CD44-201ENST00000263398 KDM5AP29375 1690 aaKnown RBP12.01□□□□□ -0.49
CD44-201ENST00000263398 ERVK-7P63135 1459 aa12.01□□□□□ -0.49
CD44-201ENST00000263398 KCNQ3O43525 872 aa12.01□□□□□ -0.49
CD44-201ENST00000263398 HSPD1P10809 573 aaKnown RBP12.01□□□□□ -0.49
CD44-201ENST00000263398 TNFAIP3P21580 790 aa12.01□□□□□ -0.49
CD44-201ENST00000263398 CMA1P23946 247 aa12.01□□□□□ -0.49
CD44-201ENST00000263398 C10orf67Q8IYJ2 551 aa12.01□□□□□ -0.49
CD44-201ENST00000263398 ZNF654Q8IZM8 581 aa12.01□□□□□ -0.49
CD44-201ENST00000263398 SNX29Q8TEQ0 813 aa12.01□□□□□ -0.49
CD44-201ENST00000263398 DDX17Q92841 729 aaKnown RBP12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms