RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 CUTAO60888 179 aa9.75□□□□□ -0.85
PTCD3-201ENST00000254630 ZAP70P43403 619 aa9.75□□□□□ -0.85
PTCD3-201ENST00000254630 TNNC1P63316 161 aa9.75□□□□□ -0.85
PTCD3-201ENST00000254630 ARPP21Q9UBL0 812 aaPredicted RBP9.75□□□□□ -0.85
PTCD3-201ENST00000254630 ODF2LQ9ULJ1 636 aa9.75□□□□□ -0.85
PTCD3-201ENST00000254630 LUC7L2Q9Y383 392 aaKnown RBP9.75□□□□□ -0.85
PTCD3-201ENST00000254630 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.75□□□□□ -0.85
PTCD3-201ENST00000254630 FAM169AQ9Y6X4 670 aa9.75□□□□□ -0.85
PTCD3-201ENST00000254630 NPC1L1Q9UHC9 1359 aa9.75□□□□□ -0.85
PTCD3-201ENST00000254630 SMIM23A6NLE4 172 aa9.75□□□□□ -0.85
PTCD3-201ENST00000254630 MYL5Q02045 173 aa9.75□□□□□ -0.85
PTCD3-201ENST00000254630 TCIRG1Q13488 830 aa9.75□□□□□ -0.85
PTCD3-201ENST00000254630 AS3MTQ9HBK9 375 aa9.75□□□□□ -0.85
PTCD3-201ENST00000254630 PREX2Q70Z35 1606 aa9.75□□□□□ -0.85
PTCD3-201ENST00000254630 MAEAQ7L5Y9 396 aa9.75□□□□□ -0.85
PTCD3-201ENST00000254630 IFT81Q8WYA0 676 aa9.75□□□□□ -0.85
PTCD3-201ENST00000254630 JAKMIP2Q96AA8 810 aa9.74□□□□□ -0.85
PTCD3-201ENST00000254630 TRIM6Q9C030 488 aaPredicted RBP9.74□□□□□ -0.85
PTCD3-201ENST00000254630 AZI2Q9H6S1 392 aa9.74□□□□□ -0.85
PTCD3-201ENST00000254630 ARFGAP3Q9NP61 516 aa9.74□□□□□ -0.85
PTCD3-201ENST00000254630 TXNDC16Q9P2K2 825 aa9.74□□□□□ -0.85
PTCD3-201ENST00000254630 MTRF1LQ9UGC7 380 aaKnown RBP9.74□□□□□ -0.85
PTCD3-201ENST00000254630 SERPINA10Q9UK55 444 aa9.74□□□□□ -0.85
PTCD3-201ENST00000254630 MSL1Q68DK7 614 aa9.74□□□□□ -0.85
PTCD3-201ENST00000254630 TTC14Q96N46 770 aa9.74□□□□□ -0.85
PTCD3-201ENST00000254630 PPIP5K2O43314 1243 aa9.74□□□□□ -0.85
PTCD3-201ENST00000254630 EIF4A1P60842 406 aaKnown RBP9.74□□□□□ -0.85
PTCD3-201ENST00000254630 PPARAQ07869 468 aa9.74□□□□□ -0.85
PTCD3-201ENST00000254630 PAK1Q13153 545 aa9.74□□□□□ -0.85
PTCD3-201ENST00000254630 EAPPQ56P03 285 aaPredicted RBP9.74□□□□□ -0.85
PTCD3-201ENST00000254630 CYP26C1Q6V0L0 522 aa9.74□□□□□ -0.85
PTCD3-201ENST00000254630 KIFC2Q96AC6 838 aa9.74□□□□□ -0.85
PTCD3-201ENST00000254630 BAG1Q99933 345 aaPredicted RBP9.74□□□□□ -0.85
PTCD3-201ENST00000254630 NCOA5Q9HCD5 579 aaKnown RBP9.74□□□□□ -0.85
PTCD3-201ENST00000254630 MYOM2P54296 1465 aa9.74□□□□□ -0.85
PTCD3-201ENST00000254630 NEURL1BA8MQ27 555 aa9.74□□□□□ -0.85
PTCD3-201ENST00000254630 M0QZ92 97 aa9.74□□□□□ -0.85
PTCD3-201ENST00000254630 NONOQ15233 471 aaKnown RBP eCLIP9.74□□□□□ -0.85
PTCD3-201ENST00000254630 CCDC25Q86WR0 208 aa9.74□□□□□ -0.85
PTCD3-201ENST00000254630 DNAJC10Q8IXB1 793 aa9.74□□□□□ -0.85
PTCD3-201ENST00000254630 USP40Q9NVE5 1235 aa9.74□□□□□ -0.85
PTCD3-201ENST00000254630 CHL1O00533 1208 aa9.74□□□□□ -0.85
PTCD3-201ENST00000254630 SNX16P57768 344 aa9.74□□□□□ -0.85
PTCD3-201ENST00000254630 ANKS4BQ8N8V4 417 aa9.74□□□□□ -0.85
PTCD3-201ENST00000254630 KIAA1524Q8TCG1 905 aa9.74□□□□□ -0.85
PTCD3-201ENST00000254630 OTUD7AQ8TE49 926 aaPredicted RBP9.74□□□□□ -0.85
PTCD3-201ENST00000254630 KCNH3Q9ULD8 1083 aa9.74□□□□□ -0.85
PTCD3-201ENST00000254630 CLASP1Q7Z460 1538 aa9.74□□□□□ -0.85
PTCD3-201ENST00000254630 SLU7O95391 586 aaKnown RBP9.74□□□□□ -0.85
PTCD3-201ENST00000254630 SLC1A4P43007 532 aa9.74□□□□□ -0.85
PTCD3-201ENST00000254630 UBLCP1Q8WVY7 318 aaPredicted RBP9.74□□□□□ -0.85
PTCD3-201ENST00000254630 DDX23Q9BUQ8 820 aaKnown RBP9.74□□□□□ -0.85
PTCD3-201ENST00000254630 MYCT1Q8N699 235 aa9.73□□□□□ -0.85
PTCD3-201ENST00000254630 MYL10Q9BUA6 226 aa9.73□□□□□ -0.85
PTCD3-201ENST00000254630 SLAIN2Q9P270 581 aa9.73□□□□□ -0.85
PTCD3-201ENST00000254630 UGGT1Q9NYU2 1555 aa9.73□□□□□ -0.85
PTCD3-201ENST00000254630 E7EVH7 732 aa9.73□□□□□ -0.85
PTCD3-201ENST00000254630 DLGAP5Q15398 846 aa9.73□□□□□ -0.85
PTCD3-201ENST00000254630 CABP7Q86V35 215 aa9.73□□□□□ -0.85
PTCD3-201ENST00000254630 SNX29Q8TEQ0 813 aa9.73□□□□□ -0.85
PTCD3-201ENST00000254630 TBC1D22AQ8WUA7 517 aa9.73□□□□□ -0.85
PTCD3-201ENST00000254630 NLRP1Q9C000 1473 aa9.73□□□□□ -0.85
PTCD3-201ENST00000254630 CDC42BPGQ6DT37 1551 aa9.73□□□□□ -0.85
PTCD3-201ENST00000254630 POLR2DO15514 142 aaKnown RBP9.73□□□□□ -0.85
PTCD3-201ENST00000254630 HSPA4P34932 840 aa9.73□□□□□ -0.85
PTCD3-201ENST00000254630 NLRP12P59046 1061 aa9.73□□□□□ -0.85
PTCD3-201ENST00000254630 FAM47AQ5JRC9 791 aa9.73□□□□□ -0.85
PTCD3-201ENST00000254630 KBTBD3Q8NAB2 608 aa9.73□□□□□ -0.85
PTCD3-201ENST00000254630 PPP1R9BQ96SB3 815 aa9.73□□□□□ -0.85
PTCD3-201ENST00000254630 TUBB4BP68371 445 aa9.73□□□□□ -0.85
PTCD3-201ENST00000254630 SYT10Q6XYQ8 523 aa9.73□□□□□ -0.85
PTCD3-201ENST00000254630 CEP128Q6ZU80 1094 aa9.73□□□□□ -0.85
PTCD3-201ENST00000254630 ZFP91Q96JP5 570 aaPredicted RBP9.73□□□□□ -0.85
PTCD3-201ENST00000254630 CLSTN2Q9H4D0 955 aa9.73□□□□□ -0.85
PTCD3-201ENST00000254630 DNM3Q9UQ16 869 aa9.73□□□□□ -0.85
PTCD3-201ENST00000254630 KIAA0232Q92628 1395 aa9.73□□□□□ -0.85
PTCD3-201ENST00000254630 PRDM1O75626 825 aa9.73□□□□□ -0.85
PTCD3-201ENST00000254630 GCNT3O95395 438 aa9.73□□□□□ -0.85
PTCD3-201ENST00000254630 VAV2P52735 878 aa9.73□□□□□ -0.85
PTCD3-201ENST00000254630 CCDC122Q5T0U0 273 aa9.73□□□□□ -0.85
PTCD3-201ENST00000254630 KRT222Q8N1A0 295 aa9.73□□□□□ -0.85
PTCD3-201ENST00000254630 VPS16Q9H269 839 aa9.73□□□□□ -0.85
PTCD3-201ENST00000254630 TBC1D7Q9P0N9 293 aa9.73□□□□□ -0.85
PTCD3-201ENST00000254630 RHOXF2BP0C7M4 288 aa9.72□□□□□ -0.85
PTCD3-201ENST00000254630 DNM2P50570 870 aa9.72□□□□□ -0.85
PTCD3-201ENST00000254630 CCDC26Q8TAB7 109 aa9.72□□□□□ -0.85
PTCD3-201ENST00000254630 RHOXF2Q9BQY4 288 aa9.72□□□□□ -0.85
PTCD3-201ENST00000254630 CSRNP2Q9H175 543 aa9.72□□□□□ -0.85
PTCD3-201ENST00000254630 DAPK3O43293 454 aa9.72□□□□□ -0.85
PTCD3-201ENST00000254630 STK10O94804 968 aaKnown RBP9.72□□□□□ -0.85
PTCD3-201ENST00000254630 PHKG2P15735 406 aa9.72□□□□□ -0.85
PTCD3-201ENST00000254630 BAG6P46379 1132 aa9.72□□□□□ -0.85
PTCD3-201ENST00000254630 NAP1L3Q99457 506 aaPredicted RBP9.72□□□□□ -0.85
PTCD3-201ENST00000254630 DSCC1Q9BVC3 393 aa9.72□□□□□ -0.85
PTCD3-201ENST00000254630 NDUFB9Q9Y6M9 179 aa9.72□□□□□ -0.85
PTCD3-201ENST00000254630 FRMPD2Q68DX3 1309 aaPredicted RBP9.72□□□□□ -0.85
PTCD3-201ENST00000254630 PNMA6EA0A0J9YXQ4 647 aa9.72□□□□□ -0.85
PTCD3-201ENST00000254630 SPOPO43791 374 aa9.72□□□□□ -0.85
PTCD3-201ENST00000254630 IRX3P78415 501 aaPredicted RBP9.72□□□□□ -0.85
PTCD3-201ENST00000254630 MAP7D1Q3KQU3 841 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms