RNA–Protein interactions for RNA: ENST00000629293.1

LINC00550-201, long intergenic non-protein coding RNA 550, humanhuman

TSL 1 (best) BASIC

Gene LINC00550, Length 3,434 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00550-201ENST00000629293 KMT2DO14686 5537 aa2.24□□□□□ -2.05
LINC00550-201ENST00000629293 K7ERS5 55 aa2.23□□□□□ -2.05
LINC00550-201ENST00000629293 MDN1Q9NU22 5596 aa2.23□□□□□ -2.05
LINC00550-201ENST00000629293 KRTAP25-1Q3LHN0 102 aa2.23□□□□□ -2.05
LINC00550-201ENST00000629293 ROMO1P60602 79 aa2.21□□□□□ -2.06
LINC00550-201ENST00000629293 A0A0D9SG42 100 aa2.2□□□□□ -2.06
LINC00550-201ENST00000629293 KRTAP12-1P59990 96 aa2.19□□□□□ -2.06
LINC00550-201ENST00000629293 KRTAP12-2P59991 146 aa2.19□□□□□ -2.06
LINC00550-201ENST00000629293 M0QZ58 72 aa2.19□□□□□ -2.06
LINC00550-201ENST00000629293 KRTAP20-1Q3LI63 56 aa2.18□□□□□ -2.06
LINC00550-201ENST00000629293 LCE3EQ5T5B0 92 aa2.16□□□□□ -2.06
LINC00550-201ENST00000629293 CRIPTQ9P021 101 aa2.16□□□□□ -2.06
LINC00550-201ENST00000629293 SPINT4Q6UDR6 99 aa2.13□□□□□ -2.07
LINC00550-201ENST00000629293 MT1BP07438 61 aa2.13□□□□□ -2.07
LINC00550-201ENST00000629293 KRTAP10-5P60370 271 aa2.12□□□□□ -2.07
LINC00550-201ENST00000629293 C10orf95Q9H7T3 257 aa2.11□□□□□ -2.07
LINC00550-201ENST00000629293 R4GN34 69 aa2.11□□□□□ -2.07
LINC00550-201ENST00000629293 SPRR2FQ96RM1 72 aa2.09□□□□□ -2.08
LINC00550-201ENST00000629293 LCE1EQ5T753 118 aa2.08□□□□□ -2.08
LINC00550-201ENST00000629293 SPRR2EP22531 72 aa2.07□□□□□ -2.08
LINC00550-201ENST00000629293 SPRR2BP35325 72 aa2.07□□□□□ -2.08
LINC00550-201ENST00000629293 SPRR2AP35326 72 aa2.07□□□□□ -2.08
LINC00550-201ENST00000629293 KRTAP2-3P0C7H8 128 aa2.07□□□□□ -2.08
LINC00550-201ENST00000629293 SPRR2GQ9BYE4 73 aa2.07□□□□□ -2.08
LINC00550-201ENST00000629293 KRTAP2-4Q9BYR9 128 aa2.07□□□□□ -2.08
LINC00550-201ENST00000629293 KRTAP19-8Q3LI54 63 aa2.07□□□□□ -2.08
LINC00550-201ENST00000629293 DSTQ03001 7570 aaKnown RBP2.03□□□□□ -2.08
LINC00550-201ENST00000629293 KRTAP8-1Q8IUC2 63 aa2.03□□□□□ -2.09
LINC00550-201ENST00000629293 KRTAP5-2Q701N4 177 aa2.02□□□□□ -2.09
LINC00550-201ENST00000629293 SPRR5A0A1B0GTR4 108 aa2.01□□□□□ -2.09
LINC00550-201ENST00000629293 KRTAP5-11Q6L8G4 156 aa2.01□□□□□ -2.09
LINC00550-201ENST00000629293 PRO2289Q9P1D8 64 aa2□□□□□ -2.09
LINC00550-201ENST00000629293 SPRR2DP22532 72 aa2□□□□□ -2.09
LINC00550-201ENST00000629293 PLAC4Q8WY50 150 aa2□□□□□ -2.09
LINC00550-201ENST00000629293 KRTAP2-1Q9BYU5 128 aa2□□□□□ -2.09
LINC00550-201ENST00000629293 PP632Q6XCG6 107 aa1.98□□□□□ -2.09
LINC00550-201ENST00000629293 KRTAP5-8O75690 187 aa1.97□□□□□ -2.09
LINC00550-201ENST00000629293 MT1XP80297 61 aa1.97□□□□□ -2.09
LINC00550-201ENST00000629293 TNP1P09430 55 aa1.93□□□□□ -2.1
LINC00550-201ENST00000629293 KRTAP4-4Q9BYR3 166 aa1.92□□□□□ -2.1
LINC00550-201ENST00000629293 KRTAP9-6A8MVA2 160 aa1.92□□□□□ -2.1
LINC00550-201ENST00000629293 KRTAP10-7P60409 375 aaPredicted RBP1.91□□□□□ -2.1
LINC00550-201ENST00000629293 LCE3DQ9BYE3 92 aa1.88□□□□□ -2.11
LINC00550-201ENST00000629293 AHNAKQ09666 5890 aaKnown RBP1.88□□□□□ -2.11
LINC00550-201ENST00000629293 LCE3AQ5TA76 89 aa1.85□□□□□ -2.11
LINC00550-201ENST00000629293 KRTAP5-1Q6L8H4 278 aa1.85□□□□□ -2.11
LINC00550-201ENST00000629293 MT4P47944 62 aa1.8□□□□□ -2.12
LINC00550-201ENST00000629293 KRTAP19-3Q7Z4W3 81 aa1.76□□□□□ -2.13
LINC00550-201ENST00000629293 KRTAP12-3P60328 96 aa1.76□□□□□ -2.13
LINC00550-201ENST00000629293 AHNAK2Q8IVF2 5795 aa1.76□□□□□ -2.13
LINC00550-201ENST00000629293 KRTAP19-7Q3SYF9 63 aa1.75□□□□□ -2.13
LINC00550-201ENST00000629293 MT1EP04732 61 aa1.75□□□□□ -2.13
LINC00550-201ENST00000629293 KRTAP19-5Q3LI72 72 aa1.72□□□□□ -2.13
LINC00550-201ENST00000629293 KRTAP4-3Q9BYR4 195 aa1.7□□□□□ -2.14
LINC00550-201ENST00000629293 MT1GP13640 62 aa1.7□□□□□ -2.14
LINC00550-201ENST00000629293 MT1MQ8N339 61 aa1.68□□□□□ -2.14
LINC00550-201ENST00000629293 KRTAP5-10Q6L8G5 202 aa1.67□□□□□ -2.14
LINC00550-201ENST00000629293 OBSCNQ5VST9 7968 aa1.67□□□□□ -2.14
LINC00550-201ENST00000629293 MT1LQ93083 61 aa1.65□□□□□ -2.14
LINC00550-201ENST00000629293 SYNE1Q8NF91 8797 aaKnown RBP1.65□□□□□ -2.15
LINC00550-201ENST00000629293 KRTAP5-7Q6L8G8 165 aa1.6□□□□□ -2.15
LINC00550-201ENST00000629293 KRTAP5-5Q701N2 237 aaPredicted RBP1.59□□□□□ -2.15
LINC00550-201ENST00000629293 INE1O15225 51 aa1.58□□□□□ -2.16
LINC00550-201ENST00000629293 KRTAP20-2Q3LI61 65 aa1.58□□□□□ -2.16
LINC00550-201ENST00000629293 KRTAP12-4P60329 112 aa1.57□□□□□ -2.16
LINC00550-201ENST00000629293 MUC5ACP98088 5654 aa1.46□□□□□ -2.18
LINC00550-201ENST00000629293 KRTAP6-1Q3LI64 71 aa1.43□□□□□ -2.18
LINC00550-201ENST00000629293 KRTAP6-2Q3LI66 62 aa1.4□□□□□ -2.19
LINC00550-201ENST00000629293 MT1AP04731 61 aa1.39□□□□□ -2.19
LINC00550-201ENST00000629293 LCE1CQ5T751 118 aa1.35□□□□□ -2.19
LINC00550-201ENST00000629293 LCE1BQ5T7P3 118 aa1.35□□□□□ -2.19
LINC00550-201ENST00000629293 PRM1P04553 51 aa1.17□□□□□ -2.22
LINC00550-201ENST00000629293 MUC19Q7Z5P9 8384 aa1.05□□□□□ -2.24
LINC00550-201ENST00000629293 PHGR1C9JFL3 82 aa1.03□□□□□ -2.24
LINC00550-201ENST00000629293 KRTAP21-2Q3LI59 83 aa0.98□□□□□ -2.25
LINC00550-201ENST00000629293 MUC16Q8WXI7 14507 aa0.92□□□□□ -2.26
LINC00550-201ENST00000629293 KRTAP21-1Q3LI58 79 aa0.76□□□□□ -2.29
Retrieved 77 of 20,778 RNA–protein pairs in 66.2 ms