RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, human

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-223	ENST00000627587	MT1B	P07438	61 aa		4.08	□□□□□ -1.76
PDLIM5-223	ENST00000627587	KRTAP20-1	Q3LI63	56 aa		4.04	□□□□□ -1.76
PDLIM5-223	ENST00000627587	MUC12	Q9UKN1	5478 aa		4.04	□□□□□ -1.76
PDLIM5-223	ENST00000627587	KRTAP23-1	A1A580	65 aa		4.01	□□□□□ -1.77
PDLIM5-223	ENST00000627587	C10orf95	Q9H7T3	257 aa		3.99	□□□□□ -1.77
PDLIM5-223	ENST00000627587	KRTAP5-9	P26371	169 aa		3.97	□□□□□ -1.77
PDLIM5-223	ENST00000627587	KRTAP10-5	P60370	271 aa		3.97	□□□□□ -1.77
PDLIM5-223	ENST00000627587	MT1X	P80297	61 aa		3.94	□□□□□ -1.78
PDLIM5-223	ENST00000627587	KRTAP2-3	P0C7H8	128 aa		3.91	□□□□□ -1.78
PDLIM5-223	ENST00000627587	KRTAP2-4	Q9BYR9	128 aa		3.91	□□□□□ -1.78
PDLIM5-223	ENST00000627587	KMT2D	O14686	5537 aa		3.9	□□□□□ -1.79
PDLIM5-223	ENST00000627587	PRO2289	Q9P1D8	64 aa		3.9	□□□□□ -1.79
PDLIM5-223	ENST00000627587	TNP1	P09430	55 aa		3.89	□□□□□ -1.79
PDLIM5-223	ENST00000627587	MDN1	Q9NU22	5596 aa		3.89	□□□□□ -1.79
PDLIM5-223	ENST00000627587	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.82	□□□□□ -1.8
PDLIM5-223	ENST00000627587	SPRR2E	P22531	72 aa		3.79	□□□□□ -1.8
PDLIM5-223	ENST00000627587	SPRR2B	P35325	72 aa		3.79	□□□□□ -1.8
PDLIM5-223	ENST00000627587	SPRR2A	P35326	72 aa		3.79	□□□□□ -1.8
PDLIM5-223	ENST00000627587	KRTAP10-7	P60409	375 aa	Predicted RBP	3.79	□□□□□ -1.8
PDLIM5-223	ENST00000627587	SPRR2F	Q96RM1	72 aa		3.79	□□□□□ -1.8
PDLIM5-223	ENST00000627587	PP632	Q6XCG6	107 aa		3.77	□□□□□ -1.81
PDLIM5-223	ENST00000627587	KRTAP2-2	Q9BYT5	123 aa		3.77	□□□□□ -1.81
PDLIM5-223	ENST00000627587	KRTAP2-1	Q9BYU5	128 aa		3.77	□□□□□ -1.81
PDLIM5-223	ENST00000627587	KRTAP10-12	P60413	245 aa		3.73	□□□□□ -1.81
PDLIM5-223	ENST00000627587	KRTAP8-1	Q8IUC2	63 aa		3.73	□□□□□ -1.81
PDLIM5-223	ENST00000627587	LCE1A	Q5T7P2	110 aa		3.72	□□□□□ -1.81
PDLIM5-223	ENST00000627587	KRTAP5-11	Q6L8G4	156 aa		3.71	□□□□□ -1.82
PDLIM5-223	ENST00000627587	LCE3A	Q5TA76	89 aa		3.7	□□□□□ -1.82
PDLIM5-223	ENST00000627587	SPRR2D	P22532	72 aa		3.67	□□□□□ -1.82
PDLIM5-223	ENST00000627587	KRTAP12-3	P60328	96 aa		3.56	□□□□□ -1.84
PDLIM5-223	ENST00000627587	KRTAP19-5	Q3LI72	72 aa		3.54	□□□□□ -1.84
PDLIM5-223	ENST00000627587	KRTAP19-7	Q3SYF9	63 aa		3.53	□□□□□ -1.84
PDLIM5-223	ENST00000627587	GPR98	Q8WXG9	6306 aa		3.51	□□□□□ -1.85
PDLIM5-223	ENST00000627587	LCE1E	Q5T753	118 aa		3.46	□□□□□ -1.86
PDLIM5-223	ENST00000627587	INE1	O15225	51 aa		3.44	□□□□□ -1.86
PDLIM5-223	ENST00000627587	MT1E	P04732	61 aa		3.44	□□□□□ -1.86
PDLIM5-223	ENST00000627587	DST	Q03001	7570 aa	Known RBP	3.4	□□□□□ -1.86
PDLIM5-223	ENST00000627587	MT1L	Q93083	61 aa		3.37	□□□□□ -1.87
PDLIM5-223	ENST00000627587	SPRR5	A0A1B0GTR4	108 aa		3.34	□□□□□ -1.87
PDLIM5-223	ENST00000627587	KRTAP19-3	Q7Z4W3	81 aa		3.33	□□□□□ -1.88
PDLIM5-223	ENST00000627587	LCE3C	Q5T5A8	94 aa		3.32	□□□□□ -1.88
PDLIM5-223	ENST00000627587	KRTAP5-1	Q6L8H4	278 aa		3.28	□□□□□ -1.88
PDLIM5-223	ENST00000627587	MT1G	P13640	62 aa		3.27	□□□□□ -1.89
PDLIM5-223	ENST00000627587	MT1M	Q8N339	61 aa		3.24	□□□□□ -1.89
PDLIM5-223	ENST00000627587	HMCN1	Q96RW7	5635 aa		3.24	□□□□□ -1.89
PDLIM5-223	ENST00000627587	KRTAP4-3	Q9BYR4	195 aa		3.22	□□□□□ -1.89
PDLIM5-223	ENST00000627587	KRTAP9-6	A8MVA2	160 aa		3.2	□□□□□ -1.9
PDLIM5-223	ENST00000627587	MT4	P47944	62 aa		3.2	□□□□□ -1.9
PDLIM5-223	ENST00000627587	KRTAP5-4	Q6L8H1	288 aa		3.2	□□□□□ -1.9
PDLIM5-223	ENST00000627587	AHNAK2	Q8IVF2	5795 aa		3.19	□□□□□ -1.9
PDLIM5-223	ENST00000627587	KRTAP4-4	Q9BYR3	166 aa		3.17	□□□□□ -1.9
PDLIM5-223	ENST00000627587	KRTAP5-10	Q6L8G5	202 aa		3.15	□□□□□ -1.91
PDLIM5-223	ENST00000627587	KRTAP5-7	Q6L8G8	165 aa		3.08	□□□□□ -1.92
PDLIM5-223	ENST00000627587	MT3	P25713	68 aa		3.03	□□□□□ -1.92
PDLIM5-223	ENST00000627587	KRTAP20-2	Q3LI61	65 aa		2.96	□□□□□ -1.93
PDLIM5-223	ENST00000627587	KRTAP5-5	Q701N2	237 aa	Predicted RBP	2.96	□□□□□ -1.94
PDLIM5-223	ENST00000627587	KRTAP12-4	P60329	112 aa		2.93	□□□□□ -1.94
PDLIM5-223	ENST00000627587	MT1A	P04731	61 aa		2.86	□□□□□ -1.95
PDLIM5-223	ENST00000627587	KRTAP6-1	Q3LI64	71 aa		2.86	□□□□□ -1.95
PDLIM5-223	ENST00000627587	OBSCN	Q5VST9	7968 aa		2.85	□□□□□ -1.95
PDLIM5-223	ENST00000627587	SYNE1	Q8NF91	8797 aa	Known RBP	2.84	□□□□□ -1.95
PDLIM5-223	ENST00000627587	LCE1F	Q5T754	118 aa		2.73	□□□□□ -1.97
PDLIM5-223	ENST00000627587	AHNAK	Q09666	5890 aa	Known RBP	2.72	□□□□□ -1.97
PDLIM5-223	ENST00000627587	KRTAP5-2	Q701N4	177 aa		2.71	□□□□□ -1.98
PDLIM5-223	ENST00000627587	KRTAP5-8	O75690	187 aa		2.67	□□□□□ -1.98
PDLIM5-223	ENST00000627587	MUC5AC	P98088	5654 aa		2.66	□□□□□ -1.98
PDLIM5-223	ENST00000627587	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.65	□□□□□ -1.99
PDLIM5-223	ENST00000627587	KRTAP6-2	Q3LI66	62 aa		2.62	□□□□□ -1.99
PDLIM5-223	ENST00000627587	LCE3D	Q9BYE3	92 aa		2.5	□□□□□ -2.01
PDLIM5-223	ENST00000627587	LCE3E	Q5T5B0	92 aa		2.43	□□□□□ -2.02
PDLIM5-223	ENST00000627587	LCE1C	Q5T751	118 aa		2.24	□□□□□ -2.05
PDLIM5-223	ENST00000627587	LCE1B	Q5T7P3	118 aa		2.24	□□□□□ -2.05
PDLIM5-223	ENST00000627587	PRM1	P04553	51 aa		2.12	□□□□□ -2.07
PDLIM5-223	ENST00000627587	MUC19	Q7Z5P9	8384 aa		1.91	□□□□□ -2.1
PDLIM5-223	ENST00000627587	KRTAP21-2	Q3LI59	83 aa		1.88	□□□□□ -2.11
PDLIM5-223	ENST00000627587	PHGR1	C9JFL3	82 aa		1.85	□□□□□ -2.11
PDLIM5-223	ENST00000627587	KRTAP21-1	Q3LI58	79 aa		1.44	□□□□□ -2.18
PDLIM5-223	ENST00000627587	MUC16	Q8WXI7	14507 aa		1.14	□□□□□ -2.23

Retrieved 78 of 20,778 RNA–protein pairs in 134.3 ms