RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 MT1EP04732 61 aa5.64□□□□□ -1.51
TRIM28-205ENST00000595028 PRO0628Q9UI54 55 aa5.64□□□□□ -1.51
TRIM28-205ENST00000595028 LCE1DQ5T752 114 aa5.58□□□□□ -1.52
TRIM28-205ENST00000595028 LCE5AQ5TCM9 118 aa5.58□□□□□ -1.52
TRIM28-205ENST00000595028 KRTAP19-3Q7Z4W3 81 aa5.57□□□□□ -1.52
TRIM28-205ENST00000595028 KRTAP19-5Q3LI72 72 aa5.54□□□□□ -1.52
TRIM28-205ENST00000595028 K7ERS5 55 aa5.53□□□□□ -1.52
TRIM28-205ENST00000595028 KRTAP5-10Q6L8G5 202 aa5.53□□□□□ -1.52
TRIM28-205ENST00000595028 BRK1Q8WUW1 75 aa5.53□□□□□ -1.52
TRIM28-205ENST00000595028 C10orf95Q9H7T3 257 aa5.51□□□□□ -1.53
TRIM28-205ENST00000595028 TNP1P09430 55 aa5.48□□□□□ -1.53
TRIM28-205ENST00000595028 CDC42SE1Q9NRR8 79 aa5.47□□□□□ -1.53
TRIM28-205ENST00000595028 LCE3AQ5TA76 89 aa5.45□□□□□ -1.54
TRIM28-205ENST00000595028 MT4P47944 62 aa5.44□□□□□ -1.54
TRIM28-205ENST00000595028 MT1GP13640 62 aa5.43□□□□□ -1.54
TRIM28-205ENST00000595028 KRTAP5-7Q6L8G8 165 aa5.39□□□□□ -1.55
TRIM28-205ENST00000595028 PP632Q6XCG6 107 aa5.39□□□□□ -1.55
TRIM28-205ENST00000595028 MT1LQ93083 61 aa5.39□□□□□ -1.55
TRIM28-205ENST00000595028 LCE4AQ5TA78 99 aa5.36□□□□□ -1.55
TRIM28-205ENST00000595028 MT1MQ8N339 61 aa5.36□□□□□ -1.55
TRIM28-205ENST00000595028 PMAIP1Q13794 54 aa5.28□□□□□ -1.56
TRIM28-205ENST00000595028 SPRR5A0A1B0GTR4 108 aa5.25□□□□□ -1.57
TRIM28-205ENST00000595028 KRTAP12-3P60328 96 aa5.24□□□□□ -1.57
TRIM28-205ENST00000595028 KRTAP5-3Q6L8H2 238 aa5.24□□□□□ -1.57
TRIM28-205ENST00000595028 KRTAP4-6Q9BYQ5 205 aa5.22□□□□□ -1.57
TRIM28-205ENST00000595028 KRTAP4-3Q9BYR4 195 aa5.21□□□□□ -1.58
TRIM28-205ENST00000595028 KRTAP25-1Q3LHN0 102 aa5.2□□□□□ -1.58
TRIM28-205ENST00000595028 ROMO1P60602 79 aa5.18□□□□□ -1.58
TRIM28-205ENST00000595028 KTN1-AS1Q86SY8 53 aa5.18□□□□□ -1.58
TRIM28-205ENST00000595028 KRTAP5-4Q6L8H1 288 aa5.16□□□□□ -1.58
TRIM28-205ENST00000595028 KRTAP4-7Q9BYR0 210 aa5.11□□□□□ -1.59
TRIM28-205ENST00000595028 KRTAP23-1A1A580 65 aa5□□□□□ -1.61
TRIM28-205ENST00000595028 AHNAKQ09666 5890 aaKnown RBP4.93□□□□□ -1.62
TRIM28-205ENST00000595028 KRTAP19-4Q3LI73 84 aa4.93□□□□□ -1.62
TRIM28-205ENST00000595028 KRTAP20-2Q3LI61 65 aa4.92□□□□□ -1.62
TRIM28-205ENST00000595028 KRTAP5-5Q701N2 237 aaPredicted RBP4.92□□□□□ -1.62
TRIM28-205ENST00000595028 KRTAP15-1Q3LI76 137 aa4.9□□□□□ -1.63
TRIM28-205ENST00000595028 LOC100996750A0A140TA64 210 aa4.84□□□□□ -1.63
TRIM28-205ENST00000595028 LCE3CQ5T5A8 94 aa4.82□□□□□ -1.64
TRIM28-205ENST00000595028 MUC5ACP98088 5654 aa4.82□□□□□ -1.64
TRIM28-205ENST00000595028 MUC5BQ9HC84 5762 aaPredicted RBP4.78□□□□□ -1.64
TRIM28-205ENST00000595028 PRAC1Q96KF2 57 aa4.78□□□□□ -1.64
TRIM28-205ENST00000595028 SYNE1Q8NF91 8797 aaKnown RBP4.78□□□□□ -1.64
TRIM28-205ENST00000595028 KRTAP12-4P60329 112 aa4.75□□□□□ -1.65
TRIM28-205ENST00000595028 KRTAP4-11Q9BYQ6 195 aa4.65□□□□□ -1.67
TRIM28-205ENST00000595028 MT1AP04731 61 aa4.59□□□□□ -1.67
TRIM28-205ENST00000595028 KRTAP9-6A8MVA2 160 aa4.56□□□□□ -1.68
TRIM28-205ENST00000595028 KRTAP5-8O75690 187 aa4.56□□□□□ -1.68
TRIM28-205ENST00000595028 KRTAP6-1Q3LI64 71 aa4.55□□□□□ -1.68
TRIM28-205ENST00000595028 KRTAP5-2Q701N4 177 aa4.48□□□□□ -1.69
TRIM28-205ENST00000595028 KRTAP9-9Q9BYP9 154 aa4.4□□□□□ -1.71
TRIM28-205ENST00000595028 KRTAP9-4Q9BYQ2 154 aa4.4□□□□□ -1.71
TRIM28-205ENST00000595028 OBSCNQ5VST9 7968 aa4.38□□□□□ -1.71
TRIM28-205ENST00000595028 KRTAP6-2Q3LI66 62 aa4.33□□□□□ -1.72
TRIM28-205ENST00000595028 MT3P25713 68 aa4.18□□□□□ -1.74
TRIM28-205ENST00000595028 KRTAP5-1Q6L8H4 278 aa4.08□□□□□ -1.76
TRIM28-205ENST00000595028 LUZP6Q538Z0 58 aa4.04□□□□□ -1.76
TRIM28-205ENST00000595028 NDUFAF8A1L188 74 aa4□□□□□ -1.77
TRIM28-205ENST00000595028 H3BS24 57 aa3.99□□□□□ -1.77
TRIM28-205ENST00000595028 LCE1EQ5T753 118 aa3.83□□□□□ -1.8
TRIM28-205ENST00000595028 A0A0A0MQY5 61 aa3.75□□□□□ -1.81
TRIM28-205ENST00000595028 KRTAP4-2Q9BYR5 136 aa3.63□□□□□ -1.83
TRIM28-205ENST00000595028 LCE1BQ5T7P3 118 aa3.59□□□□□ -1.83
TRIM28-205ENST00000595028 LCE1CQ5T751 118 aa3.56□□□□□ -1.84
TRIM28-205ENST00000595028 INE1O15225 51 aa3.49□□□□□ -1.85
TRIM28-205ENST00000595028 LCE3DQ9BYE3 92 aa3.47□□□□□ -1.85
TRIM28-205ENST00000595028 KRTAP4-12Q9BQ66 201 aa3.46□□□□□ -1.86
TRIM28-205ENST00000595028 LCE3EQ5T5B0 92 aa3.28□□□□□ -1.88
TRIM28-205ENST00000595028 KRTAP5-11Q6L8G4 156 aa3.27□□□□□ -1.89
TRIM28-205ENST00000595028 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.26□□□□□ -1.89
TRIM28-205ENST00000595028 PHGR1C9JFL3 82 aa3.25□□□□□ -1.89
TRIM28-205ENST00000595028 LCE1FQ5T754 118 aa3.18□□□□□ -1.9
TRIM28-205ENST00000595028 KRTAP21-2Q3LI59 83 aa3□□□□□ -1.93
TRIM28-205ENST00000595028 MUC19Q7Z5P9 8384 aa2.74□□□□□ -1.97
TRIM28-205ENST00000595028 KRTAP4-4Q9BYR3 166 aa2.73□□□□□ -1.97
TRIM28-205ENST00000595028 PRM1P04553 51 aa2.68□□□□□ -1.98
TRIM28-205ENST00000595028 KRTAP21-1Q3LI58 79 aa2.47□□□□□ -2.01
TRIM28-205ENST00000595028 MUC16Q8WXI7 14507 aa1.87□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 64.8 ms