RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 ADCY10Q96PN6 1610 aa-2.68□□□□□ -2.84
SMCHD1-204ENST00000581226 SMIM2Q9BVW6 85 aa-2.71□□□□□ -2.84
SMCHD1-204ENST00000581226 DMDP11532 3685 aa-2.72□□□□□ -2.84
SMCHD1-204ENST00000581226 CLTCL1P53675 1640 aa-2.72□□□□□ -2.85
SMCHD1-204ENST00000581226 CEP250Q9BV73 2442 aa-2.73□□□□□ -2.85
SMCHD1-204ENST00000581226 SZT2Q5T011 3432 aa-2.73□□□□□ -2.85
SMCHD1-204ENST00000581226 ABCC8Q09428 1581 aa-2.74□□□□□ -2.85
SMCHD1-204ENST00000581226 CEP350Q5VT06 3117 aa-2.75□□□□□ -2.85
SMCHD1-204ENST00000581226 TRPM2O94759 1503 aa-2.79□□□□□ -2.86
SMCHD1-204ENST00000581226 FANCD2Q9BXW9 1451 aa-2.8□□□□□ -2.86
SMCHD1-204ENST00000581226 SMIM31A0A1B0GVY4 71 aa-2.82□□□□□ -2.86
SMCHD1-204ENST00000581226 WDFY4Q6ZS81 3184 aa-2.83□□□□□ -2.86
SMCHD1-204ENST00000581226 SPEGQ15772 3267 aa-2.83□□□□□ -2.86
SMCHD1-204ENST00000581226 CMC2Q9NRP2 79 aa-2.85□□□□□ -2.87
SMCHD1-204ENST00000581226 RPS29P62273 56 aaKnown RBP-2.88□□□□□ -2.87
SMCHD1-204ENST00000581226 MUC3AQ02505 3323 aa-2.93□□□□□ -2.88
SMCHD1-204ENST00000581226 NDUFA1O15239 70 aa-2.94□□□□□ -2.88
SMCHD1-204ENST00000581226 DNAH12Q6ZR08 3092 aa-2.98□□□□□ -2.89
SMCHD1-204ENST00000581226 KRTAP19-6Q3LI70 58 aa-2.99□□□□□ -2.89
SMCHD1-204ENST00000581226 MT1FP04733 61 aa-3.01□□□□□ -2.89
SMCHD1-204ENST00000581226 ERICH3Q5RHP9 1530 aa-3.02□□□□□ -2.89
SMCHD1-204ENST00000581226 CENPEQ02224 2701 aa-3.05□□□□□ -2.9
SMCHD1-204ENST00000581226 MKI67P46013 3256 aaKnown RBP-3.1□□□□□ -2.9
SMCHD1-204ENST00000581226 EP400Q96L91 3159 aa-3.13□□□□□ -2.91
SMCHD1-204ENST00000581226 DCHS1Q96JQ0 3298 aa-3.15□□□□□ -2.91
SMCHD1-204ENST00000581226 XIRP2A4UGR9 3374 aa-3.15□□□□□ -2.91
SMCHD1-204ENST00000581226 USP34Q70CQ2 3546 aa-3.18□□□□□ -2.92
SMCHD1-204ENST00000581226 TOMM7Q9P0U1 55 aa-3.21□□□□□ -2.92
SMCHD1-204ENST00000581226 SNRPGP15A8MWD9 76 aa-3.28□□□□□ -2.93
SMCHD1-204ENST00000581226 DNAH14Q0VDD8 3507 aa-3.31□□□□□ -2.94
SMCHD1-204ENST00000581226 DUOX1Q9NRD9 1551 aa-3.32□□□□□ -2.94
SMCHD1-204ENST00000581226 LINC01590Q5TEZ4 76 aa-3.32□□□□□ -2.94
SMCHD1-204ENST00000581226 UNC80Q8N2C7 3258 aa-3.32□□□□□ -2.94
SMCHD1-204ENST00000581226 CFAP47Q6ZTR5 3102 aa-3.33□□□□□ -2.94
SMCHD1-204ENST00000581226 LOC400499M0QZD8 3231 aa-3.36□□□□□ -2.95
SMCHD1-204ENST00000581226 SAMD9LQ8IVG5 1584 aa-3.36□□□□□ -2.95
SMCHD1-204ENST00000581226 RPL39P62891 51 aaKnown RBP-3.4□□□□□ -2.95
SMCHD1-204ENST00000581226 RHPN1-AS1Q9BWJ2 59 aa-3.4□□□□□ -2.95
SMCHD1-204ENST00000581226 IQGAP2Q13576 1575 aa-3.41□□□□□ -2.96
SMCHD1-204ENST00000581226 ASPMQ8IZT6 3477 aa-3.47□□□□□ -2.97
SMCHD1-204ENST00000581226 DEFB133Q30KQ1 61 aa-3.49□□□□□ -2.97
SMCHD1-204ENST00000581226 ATP7AQ04656 1500 aa-3.49□□□□□ -2.97
SMCHD1-204ENST00000581226 A0A096LNI7 61 aa-3.51□□□□□ -2.97
SMCHD1-204ENST00000581226 TTTY10Q9BZA0 68 aa-3.54□□□□□ -2.98
SMCHD1-204ENST00000581226 RPL39LQ96EH5 51 aaKnown RBP-3.57□□□□□ -2.98
SMCHD1-204ENST00000581226 TOP2AP11388 1531 aaKnown RBP-3.59□□□□□ -2.98
SMCHD1-204ENST00000581226 HTN1P15515 57 aa-3.62□□□□□ -2.99
SMCHD1-204ENST00000581226 TOMM5Q8N4H5 51 aa-3.62□□□□□ -2.99
SMCHD1-204ENST00000581226 MROH2BQ7Z745 1585 aa-3.64□□□□□ -2.99
SMCHD1-204ENST00000581226 BRCA2P51587 3418 aa-3.66□□□□□ -3
SMCHD1-204ENST00000581226 DEFB124Q8NES8 71 aa-3.7□□□□□ -3
SMCHD1-204ENST00000581226 KRTAP19-2Q3LHN2 52 aa-3.73□□□□□ -3.01
SMCHD1-204ENST00000581226 DEFB104AQ8WTQ1 72 aa-3.77□□□□□ -3.01
SMCHD1-204ENST00000581226 CD52P31358 61 aa-3.8□□□□□ -3.02
SMCHD1-204ENST00000581226 VCANP13611 3396 aa-3.82□□□□□ -3.02
SMCHD1-204ENST00000581226 CDH23Q9H251 3354 aa-3.92□□□□□ -3.04
SMCHD1-204ENST00000581226 CENPFP49454 3210 aa-3.94□□□□□ -3.04
SMCHD1-204ENST00000581226 VPS13AQ96RL7 3174 aa-4.02□□□□□ -3.05
SMCHD1-204ENST00000581226 H3BUX3 64 aa-4.1□□□□□ -3.07
SMCHD1-204ENST00000581226 LINC01556Q5JQF7 62 aa-4.18□□□□□ -3.08
SMCHD1-204ENST00000581226 K7EIM0 57 aa-4.19□□□□□ -3.08
SMCHD1-204ENST00000581226 GCC2Q8IWJ2 1684 aa-4.26□□□□□ -3.09
SMCHD1-204ENST00000581226 ARHGAP5-AS1Q96IT6 56 aa-4.39□□□□□ -3.11
SMCHD1-204ENST00000581226 SNRPGP62308 76 aaKnown RBP-4.41□□□□□ -3.12
SMCHD1-204ENST00000581226 UTRNP46939 3433 aa-4.44□□□□□ -3.12
SMCHD1-204ENST00000581226 PRCDQ00LT1 54 aa-4.45□□□□□ -3.12
SMCHD1-204ENST00000581226 A0A096LPF7 62 aa-4.59□□□□□ -3.14
SMCHD1-204ENST00000581226 APELAP0DMC3 54 aa-4.59□□□□□ -3.14
SMCHD1-204ENST00000581226 TMEM167AQ8TBQ9 72 aa-4.69□□□□□ -3.16
SMCHD1-204ENST00000581226 RPL39P5Q59GN2 51 aa-4.87□□□□□ -3.19
SMCHD1-204ENST00000581226 H3BSH0 61 aa-4.9□□□□□ -3.19
SMCHD1-204ENST00000581226 GOLGB1Q14789 3259 aaKnown RBP-4.98□□□□□ -3.21
SMCHD1-204ENST00000581226 DEFB108AA8MXU0 73 aa-5□□□□□ -3.21
SMCHD1-204ENST00000581226 HTN3P15516 51 aa-5□□□□□ -3.21
SMCHD1-204ENST00000581226 Q9Y3F1 56 aa-5.24□□□□□ -3.25
SMCHD1-204ENST00000581226 COX14Q96I36 57 aa-5.64□□□□□ -3.31
SMCHD1-204ENST00000581226 DEFB108BQ8NET1 73 aa-5.68□□□□□ -3.32
SMCHD1-204ENST00000581226 STATHP02808 62 aa-6.36□□□□□ -3.43
Retrieved 78 of 20,778 RNA–protein pairs in 75.3 ms