RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 MT1XP80297 61 aa3.59□□□□□ -1.83
NUP88-211ENST00000575976 A8MU10 97 aa3.56□□□□□ -1.84
NUP88-211ENST00000575976 PRO2289Q9P1D8 64 aa3.55□□□□□ -1.84
NUP88-211ENST00000575976 KRTAP12-1P59990 96 aa3.54□□□□□ -1.84
NUP88-211ENST00000575976 SPINT4Q6UDR6 99 aa3.54□□□□□ -1.84
NUP88-211ENST00000575976 UQCR11O14957 56 aa3.53□□□□□ -1.84
NUP88-211ENST00000575976 KRTAP5-9P26371 169 aa3.52□□□□□ -1.85
NUP88-211ENST00000575976 KRTAP12-2P59991 146 aa3.51□□□□□ -1.85
NUP88-211ENST00000575976 MIR22HGQ0VDD5 57 aa3.51□□□□□ -1.85
NUP88-211ENST00000575976 KRTAP2-2Q9BYT5 123 aa3.48□□□□□ -1.85
NUP88-211ENST00000575976 KRTAP2-1Q9BYU5 128 aa3.48□□□□□ -1.85
NUP88-211ENST00000575976 KRTAP10-7P60409 375 aaPredicted RBP3.44□□□□□ -1.86
NUP88-211ENST00000575976 KRTAP10-12P60413 245 aa3.41□□□□□ -1.86
NUP88-211ENST00000575976 NDUFAF8A1L188 74 aa3.39□□□□□ -1.87
NUP88-211ENST00000575976 SPRR2EP22531 72 aa3.39□□□□□ -1.87
NUP88-211ENST00000575976 SPRR2BP35325 72 aa3.39□□□□□ -1.87
NUP88-211ENST00000575976 SPRR2AP35326 72 aa3.39□□□□□ -1.87
NUP88-211ENST00000575976 KRTAP19-4Q3LI73 84 aa3.39□□□□□ -1.87
NUP88-211ENST00000575976 C10orf95Q9H7T3 257 aa3.37□□□□□ -1.87
NUP88-211ENST00000575976 KRTAP8-1Q8IUC2 63 aa3.35□□□□□ -1.87
NUP88-211ENST00000575976 SPRR2FQ96RM1 72 aa3.35□□□□□ -1.87
NUP88-211ENST00000575976 TNP1P09430 55 aa3.3□□□□□ -1.88
NUP88-211ENST00000575976 KRTAP25-1Q3LHN0 102 aa3.3□□□□□ -1.88
NUP88-211ENST00000575976 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.3□□□□□ -1.88
NUP88-211ENST00000575976 SPRR2DP22532 72 aa3.29□□□□□ -1.88
NUP88-211ENST00000575976 LCE1AQ5T7P2 110 aa3.26□□□□□ -1.89
NUP88-211ENST00000575976 LCE3AQ5TA76 89 aa3.22□□□□□ -1.89
NUP88-211ENST00000575976 DSTQ03001 7570 aaKnown RBP3.22□□□□□ -1.89
NUP88-211ENST00000575976 KRTAP19-7Q3SYF9 63 aa3.21□□□□□ -1.9
NUP88-211ENST00000575976 KRTAP19-5Q3LI72 72 aa3.18□□□□□ -1.9
NUP88-211ENST00000575976 MT1EP04732 61 aa3.16□□□□□ -1.9
NUP88-211ENST00000575976 KRTAP15-1Q3LI76 137 aa3.15□□□□□ -1.91
NUP88-211ENST00000575976 KRTAP19-3Q7Z4W3 81 aa3.09□□□□□ -1.91
NUP88-211ENST00000575976 KRTAP12-3P60328 96 aa3.08□□□□□ -1.92
NUP88-211ENST00000575976 KRTAP5-11Q6L8G4 156 aa3.08□□□□□ -1.92
NUP88-211ENST00000575976 HMCN1Q96RW7 5635 aa3.07□□□□□ -1.92
NUP88-211ENST00000575976 AHNAK2Q8IVF2 5795 aa3.06□□□□□ -1.92
NUP88-211ENST00000575976 KRTAP5-10Q6L8G5 202 aa3.06□□□□□ -1.92
NUP88-211ENST00000575976 MT1LQ93083 61 aa3.06□□□□□ -1.92
NUP88-211ENST00000575976 MT1GP13640 62 aa3.04□□□□□ -1.92
NUP88-211ENST00000575976 PP632Q6XCG6 107 aa3.03□□□□□ -1.92
NUP88-211ENST00000575976 KRTAP5-7Q6L8G8 165 aa3□□□□□ -1.93
NUP88-211ENST00000575976 MT1MQ8N339 61 aa3□□□□□ -1.93
NUP88-211ENST00000575976 INE1O15225 51 aa2.99□□□□□ -1.93
NUP88-211ENST00000575976 SPRR5A0A1B0GTR4 108 aa2.97□□□□□ -1.93
NUP88-211ENST00000575976 KRTAP4-3Q9BYR4 195 aa2.94□□□□□ -1.94
NUP88-211ENST00000575976 MT4P47944 62 aa2.9□□□□□ -1.95
NUP88-211ENST00000575976 LCE3CQ5T5A8 94 aa2.87□□□□□ -1.95
NUP88-211ENST00000575976 KRTAP5-1Q6L8H4 278 aa2.82□□□□□ -1.96
NUP88-211ENST00000575976 KRTAP4-4Q9BYR3 166 aa2.79□□□□□ -1.96
NUP88-211ENST00000575976 KRTAP5-4Q6L8H1 288 aa2.78□□□□□ -1.96
NUP88-211ENST00000575976 KRTAP5-5Q701N2 237 aaPredicted RBP2.73□□□□□ -1.97
NUP88-211ENST00000575976 AHNAKQ09666 5890 aaKnown RBP2.71□□□□□ -1.97
NUP88-211ENST00000575976 KRTAP9-6A8MVA2 160 aa2.71□□□□□ -1.98
NUP88-211ENST00000575976 MUC5ACP98088 5654 aa2.65□□□□□ -1.99
NUP88-211ENST00000575976 MT3P25713 68 aa2.63□□□□□ -1.99
NUP88-211ENST00000575976 MUC5BQ9HC84 5762 aaPredicted RBP2.61□□□□□ -1.99
NUP88-211ENST00000575976 MT1AP04731 61 aa2.61□□□□□ -1.99
NUP88-211ENST00000575976 KRTAP20-2Q3LI61 65 aa2.6□□□□□ -1.99
NUP88-211ENST00000575976 KRTAP12-4P60329 112 aa2.59□□□□□ -1.99
NUP88-211ENST00000575976 KRTAP6-1Q3LI64 71 aa2.59□□□□□ -1.99
NUP88-211ENST00000575976 SYNE1Q8NF91 8797 aaKnown RBP2.54□□□□□ -2
NUP88-211ENST00000575976 LCE1EQ5T753 118 aa2.51□□□□□ -2.01
NUP88-211ENST00000575976 KRTAP5-8O75690 187 aa2.46□□□□□ -2.02
NUP88-211ENST00000575976 KRTAP5-2Q701N4 177 aa2.46□□□□□ -2.02
NUP88-211ENST00000575976 KRTAP6-2Q3LI66 62 aa2.42□□□□□ -2.02
NUP88-211ENST00000575976 LCE1FQ5T754 118 aa2.33□□□□□ -2.04
NUP88-211ENST00000575976 OBSCNQ5VST9 7968 aa2.32□□□□□ -2.04
NUP88-211ENST00000575976 LCE3DQ9BYE3 92 aa2.11□□□□□ -2.07
NUP88-211ENST00000575976 LCE3EQ5T5B0 92 aa2.03□□□□□ -2.08
NUP88-211ENST00000575976 LCE1BQ5T7P3 118 aa1.99□□□□□ -2.09
NUP88-211ENST00000575976 LCE1CQ5T751 118 aa1.96□□□□□ -2.1
NUP88-211ENST00000575976 PHGR1C9JFL3 82 aa1.81□□□□□ -2.12
NUP88-211ENST00000575976 KRTAP21-2Q3LI59 83 aa1.69□□□□□ -2.14
NUP88-211ENST00000575976 PRM1P04553 51 aa1.65□□□□□ -2.15
NUP88-211ENST00000575976 MUC19Q7Z5P9 8384 aa1.46□□□□□ -2.18
NUP88-211ENST00000575976 KRTAP21-1Q3LI58 79 aa1.38□□□□□ -2.19
NUP88-211ENST00000575976 MUC16Q8WXI7 14507 aa0.99□□□□□ -2.25
Retrieved 78 of 20,778 RNA–protein pairs in 70.6 ms