RNA–Protein interactions for RNA: ENST00000573936.5

CHD3-216, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-216ENST00000573936 SPINT4Q6UDR6 99 aa4.47□□□□□ -1.69
CHD3-216ENST00000573936 KRTAP10-12P60413 245 aa4.4□□□□□ -1.71
CHD3-216ENST00000573936 CDC42SE1Q9NRR8 79 aa4.4□□□□□ -1.71
CHD3-216ENST00000573936 KRTAP10-7P60409 375 aaPredicted RBP4.39□□□□□ -1.71
CHD3-216ENST00000573936 KRTAP8-1Q8IUC2 63 aa4.39□□□□□ -1.71
CHD3-216ENST00000573936 GPR98Q8WXG9 6306 aa4.38□□□□□ -1.71
CHD3-216ENST00000573936 SPRR2DP22532 72 aa4.37□□□□□ -1.71
CHD3-216ENST00000573936 LCE1AQ5T7P2 110 aa4.35□□□□□ -1.71
CHD3-216ENST00000573936 K7ERS5 55 aa4.33□□□□□ -1.72
CHD3-216ENST00000573936 BRK1Q8WUW1 75 aa4.29□□□□□ -1.72
CHD3-216ENST00000573936 C10orf95Q9H7T3 257 aa4.27□□□□□ -1.73
CHD3-216ENST00000573936 TNP1P09430 55 aa4.21□□□□□ -1.74
CHD3-216ENST00000573936 ROMO1P60602 79 aa4.14□□□□□ -1.75
CHD3-216ENST00000573936 DSTQ03001 7570 aaKnown RBP4.12□□□□□ -1.75
CHD3-216ENST00000573936 KRTAP25-1Q3LHN0 102 aa4.11□□□□□ -1.75
CHD3-216ENST00000573936 KRTAP19-7Q3SYF9 63 aa4.11□□□□□ -1.75
CHD3-216ENST00000573936 MT1EP04732 61 aa4.08□□□□□ -1.76
CHD3-216ENST00000573936 PRO0628Q9UI54 55 aa4.08□□□□□ -1.76
CHD3-216ENST00000573936 KRTAP19-5Q3LI72 72 aa4.07□□□□□ -1.76
CHD3-216ENST00000573936 LCE3AQ5TA76 89 aa4.07□□□□□ -1.76
CHD3-216ENST00000573936 PMAIP1Q13794 54 aa4.04□□□□□ -1.76
CHD3-216ENST00000573936 KRTAP19-4Q3LI73 84 aa4.02□□□□□ -1.77
CHD3-216ENST00000573936 KRTAP19-3Q7Z4W3 81 aa4.02□□□□□ -1.77
CHD3-216ENST00000573936 KRTAP23-1A1A580 65 aa3.96□□□□□ -1.78
CHD3-216ENST00000573936 MT1GP13640 62 aa3.96□□□□□ -1.78
CHD3-216ENST00000573936 PP632Q6XCG6 107 aa3.95□□□□□ -1.78
CHD3-216ENST00000573936 KRTAP12-3P60328 96 aa3.94□□□□□ -1.78
CHD3-216ENST00000573936 HMCN1Q96RW7 5635 aa3.93□□□□□ -1.78
CHD3-216ENST00000573936 MT1LQ93083 61 aa3.93□□□□□ -1.78
CHD3-216ENST00000573936 AHNAK2Q8IVF2 5795 aa3.89□□□□□ -1.79
CHD3-216ENST00000573936 KRTAP5-10Q6L8G5 202 aa3.87□□□□□ -1.79
CHD3-216ENST00000573936 MT1MQ8N339 61 aa3.86□□□□□ -1.79
CHD3-216ENST00000573936 MT4P47944 62 aa3.85□□□□□ -1.79
CHD3-216ENST00000573936 PRAC1Q96KF2 57 aa3.83□□□□□ -1.8
CHD3-216ENST00000573936 KTN1-AS1Q86SY8 53 aa3.81□□□□□ -1.8
CHD3-216ENST00000573936 KRTAP5-7Q6L8G8 165 aa3.79□□□□□ -1.8
CHD3-216ENST00000573936 SPRR5A0A1B0GTR4 108 aa3.77□□□□□ -1.81
CHD3-216ENST00000573936 KRTAP15-1Q3LI76 137 aa3.76□□□□□ -1.81
CHD3-216ENST00000573936 KRTAP4-3Q9BYR4 195 aa3.73□□□□□ -1.81
CHD3-216ENST00000573936 LCE3CQ5T5A8 94 aa3.65□□□□□ -1.83
CHD3-216ENST00000573936 KRTAP5-4Q6L8H1 288 aa3.64□□□□□ -1.83
CHD3-216ENST00000573936 SVIPQ8NHG7 77 aa3.6□□□□□ -1.83
CHD3-216ENST00000573936 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.57□□□□□ -1.84
CHD3-216ENST00000573936 KRTAP5-5Q701N2 237 aaPredicted RBP3.52□□□□□ -1.85
CHD3-216ENST00000573936 KRTAP20-2Q3LI61 65 aa3.48□□□□□ -1.85
CHD3-216ENST00000573936 KRTAP12-4P60329 112 aa3.44□□□□□ -1.86
CHD3-216ENST00000573936 KRTAP9-6A8MVA2 160 aa3.42□□□□□ -1.86
CHD3-216ENST00000573936 AHNAKQ09666 5890 aaKnown RBP3.37□□□□□ -1.87
CHD3-216ENST00000573936 SYNE1Q8NF91 8797 aaKnown RBP3.37□□□□□ -1.87
CHD3-216ENST00000573936 MT1AP04731 61 aa3.36□□□□□ -1.87
CHD3-216ENST00000573936 MUC5ACP98088 5654 aa3.32□□□□□ -1.88
CHD3-216ENST00000573936 KRTAP6-1Q3LI64 71 aa3.31□□□□□ -1.88
CHD3-216ENST00000573936 MUC5BQ9HC84 5762 aaPredicted RBP3.29□□□□□ -1.88
CHD3-216ENST00000573936 KRTAP5-11Q6L8G4 156 aa3.27□□□□□ -1.89
CHD3-216ENST00000573936 KRTAP5-8O75690 187 aa3.19□□□□□ -1.9
CHD3-216ENST00000573936 KRTAP5-2Q701N4 177 aa3.17□□□□□ -1.9
CHD3-216ENST00000573936 KRTAP6-2Q3LI66 62 aa3.12□□□□□ -1.91
CHD3-216ENST00000573936 LUZP6Q538Z0 58 aa3.12□□□□□ -1.91
CHD3-216ENST00000573936 MT3P25713 68 aa3.09□□□□□ -1.91
CHD3-216ENST00000573936 OBSCNQ5VST9 7968 aa3.08□□□□□ -1.92
CHD3-216ENST00000573936 KRTAP5-1Q6L8H4 278 aa3.05□□□□□ -1.92
CHD3-216ENST00000573936 KRTAP4-4Q9BYR3 166 aa2.98□□□□□ -1.93
CHD3-216ENST00000573936 NDUFAF8A1L188 74 aa2.92□□□□□ -1.94
CHD3-216ENST00000573936 LCE1EQ5T753 118 aa2.85□□□□□ -1.95
CHD3-216ENST00000573936 H3BS24 57 aa2.78□□□□□ -1.96
CHD3-216ENST00000573936 LCE3DQ9BYE3 92 aa2.68□□□□□ -1.98
CHD3-216ENST00000573936 LCE1CQ5T751 118 aa2.58□□□□□ -2
CHD3-216ENST00000573936 LCE1BQ5T7P3 118 aa2.58□□□□□ -2
CHD3-216ENST00000573936 LCE3EQ5T5B0 92 aa2.57□□□□□ -2
CHD3-216ENST00000573936 A0A0A0MQY5 61 aa2.48□□□□□ -2.01
CHD3-216ENST00000573936 INE1O15225 51 aa2.38□□□□□ -2.03
CHD3-216ENST00000573936 PHGR1C9JFL3 82 aa2.31□□□□□ -2.04
CHD3-216ENST00000573936 LCE1FQ5T754 118 aa2.29□□□□□ -2.04
CHD3-216ENST00000573936 KRTAP21-2Q3LI59 83 aa2.17□□□□□ -2.06
CHD3-216ENST00000573936 PRM1P04553 51 aa2.14□□□□□ -2.07
CHD3-216ENST00000573936 MUC19Q7Z5P9 8384 aa1.93□□□□□ -2.1
CHD3-216ENST00000573936 KRTAP21-1Q3LI58 79 aa1.76□□□□□ -2.13
CHD3-216ENST00000573936 MUC16Q8WXI7 14507 aa1.35□□□□□ -2.19
Retrieved 78 of 20,778 RNA–protein pairs in 71.4 ms