RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 M0QZ58 72 aa2.94□□□□□ -1.94
VPS53-213ENST00000572334 PP632Q6XCG6 107 aa2.92□□□□□ -1.94
VPS53-213ENST00000572334 PLAC4Q8WY50 150 aa2.92□□□□□ -1.94
VPS53-213ENST00000572334 A0A0D9SG42 100 aa2.89□□□□□ -1.95
VPS53-213ENST00000572334 KRTAP2-3P0C7H8 128 aa2.86□□□□□ -1.95
VPS53-213ENST00000572334 KRTAP2-4Q9BYR9 128 aa2.86□□□□□ -1.95
VPS53-213ENST00000572334 MT1XP80297 61 aa2.85□□□□□ -1.95
VPS53-213ENST00000572334 C10orf95Q9H7T3 257 aa2.85□□□□□ -1.95
VPS53-213ENST00000572334 SPRR2FQ96RM1 72 aa2.83□□□□□ -1.96
VPS53-213ENST00000572334 SPRR2EP22531 72 aa2.81□□□□□ -1.96
VPS53-213ENST00000572334 SPRR2BP35325 72 aa2.81□□□□□ -1.96
VPS53-213ENST00000572334 SPRR2AP35326 72 aa2.81□□□□□ -1.96
VPS53-213ENST00000572334 KRTAP12-1P59990 96 aa2.81□□□□□ -1.96
VPS53-213ENST00000572334 LCE1AQ5T7P2 110 aa2.81□□□□□ -1.96
VPS53-213ENST00000572334 KRTAP12-2P59991 146 aa2.79□□□□□ -1.96
VPS53-213ENST00000572334 KRTAP13-4Q3LI77 160 aa2.78□□□□□ -1.96
VPS53-213ENST00000572334 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.78□□□□□ -1.96
VPS53-213ENST00000572334 KRTAP8-1Q8IUC2 63 aa2.77□□□□□ -1.97
VPS53-213ENST00000572334 KRTAP2-2Q9BYT5 123 aa2.76□□□□□ -1.97
VPS53-213ENST00000572334 KRTAP2-1Q9BYU5 128 aa2.76□□□□□ -1.97
VPS53-213ENST00000572334 PRO2289Q9P1D8 64 aa2.76□□□□□ -1.97
VPS53-213ENST00000572334 KRTAP23-1A1A580 65 aa2.75□□□□□ -1.97
VPS53-213ENST00000572334 INE1O15225 51 aa2.73□□□□□ -1.97
VPS53-213ENST00000572334 R4GN34 69 aa2.73□□□□□ -1.97
VPS53-213ENST00000572334 SPRR2DP22532 72 aa2.71□□□□□ -1.98
VPS53-213ENST00000572334 KRTAP10-7P60409 375 aaPredicted RBP2.71□□□□□ -1.98
VPS53-213ENST00000572334 KRTAP10-12P60413 245 aa2.7□□□□□ -1.98
VPS53-213ENST00000572334 TNP1P09430 55 aa2.63□□□□□ -1.99
VPS53-213ENST00000572334 DSTQ03001 7570 aaKnown RBP2.59□□□□□ -1.99
VPS53-213ENST00000572334 SPRR5A0A1B0GTR4 108 aa2.59□□□□□ -1.99
VPS53-213ENST00000572334 KRTAP5-11Q6L8G4 156 aa2.59□□□□□ -1.99
VPS53-213ENST00000572334 KRTAP19-7Q3SYF9 63 aa2.56□□□□□ -2
VPS53-213ENST00000572334 MT1EP04732 61 aa2.53□□□□□ -2
VPS53-213ENST00000572334 GPR98Q8WXG9 6306 aa2.52□□□□□ -2.01
VPS53-213ENST00000572334 KRTAP19-3Q7Z4W3 81 aa2.51□□□□□ -2.01
VPS53-213ENST00000572334 MT1GP13640 62 aa2.43□□□□□ -2.02
VPS53-213ENST00000572334 KRTAP19-5Q3LI72 72 aa2.43□□□□□ -2.02
VPS53-213ENST00000572334 HMCN1Q96RW7 5635 aa2.41□□□□□ -2.02
VPS53-213ENST00000572334 MT1MQ8N339 61 aa2.41□□□□□ -2.02
VPS53-213ENST00000572334 MT4P47944 62 aa2.4□□□□□ -2.03
VPS53-213ENST00000572334 LCE1EQ5T753 118 aa2.39□□□□□ -2.03
VPS53-213ENST00000572334 KRTAP5-4Q6L8H1 288 aa2.39□□□□□ -2.03
VPS53-213ENST00000572334 MT1LQ93083 61 aa2.39□□□□□ -2.03
VPS53-213ENST00000572334 AHNAK2Q8IVF2 5795 aa2.38□□□□□ -2.03
VPS53-213ENST00000572334 KRTAP4-3Q9BYR4 195 aa2.38□□□□□ -2.03
VPS53-213ENST00000572334 KRTAP5-10Q6L8G5 202 aa2.36□□□□□ -2.03
VPS53-213ENST00000572334 KRTAP5-1Q6L8H4 278 aa2.36□□□□□ -2.03
VPS53-213ENST00000572334 LCE3AQ5TA76 89 aa2.31□□□□□ -2.04
VPS53-213ENST00000572334 KRTAP5-7Q6L8G8 165 aa2.28□□□□□ -2.04
VPS53-213ENST00000572334 KRTAP4-4Q9BYR3 166 aa2.28□□□□□ -2.04
VPS53-213ENST00000572334 KRTAP20-2Q3LI61 65 aa2.25□□□□□ -2.05
VPS53-213ENST00000572334 KRTAP5-5Q701N2 237 aaPredicted RBP2.25□□□□□ -2.05
VPS53-213ENST00000572334 SYNE1Q8NF91 8797 aaKnown RBP2.21□□□□□ -2.06
VPS53-213ENST00000572334 KRTAP12-3P60328 96 aa2.2□□□□□ -2.06
VPS53-213ENST00000572334 KRTAP12-4P60329 112 aa2.13□□□□□ -2.07
VPS53-213ENST00000572334 LCE3CQ5T5A8 94 aa2.09□□□□□ -2.07
VPS53-213ENST00000572334 KRTAP5-2Q701N4 177 aa2.08□□□□□ -2.08
VPS53-213ENST00000572334 KRTAP6-1Q3LI64 71 aa2.04□□□□□ -2.08
VPS53-213ENST00000572334 KRTAP5-8O75690 187 aa2.03□□□□□ -2.08
VPS53-213ENST00000572334 MT1AP04731 61 aa2.02□□□□□ -2.09
VPS53-213ENST00000572334 KRTAP9-6A8MVA2 160 aa2.01□□□□□ -2.09
VPS53-213ENST00000572334 MUC5BQ9HC84 5762 aaPredicted RBP1.98□□□□□ -2.09
VPS53-213ENST00000572334 OBSCNQ5VST9 7968 aa1.97□□□□□ -2.09
VPS53-213ENST00000572334 MUC5ACP98088 5654 aa1.95□□□□□ -2.1
VPS53-213ENST00000572334 KRTAP6-2Q3LI66 62 aa1.95□□□□□ -2.1
VPS53-213ENST00000572334 AHNAKQ09666 5890 aaKnown RBP1.94□□□□□ -2.1
VPS53-213ENST00000572334 MT3P25713 68 aa1.89□□□□□ -2.11
VPS53-213ENST00000572334 LCE3EQ5T5B0 92 aa1.71□□□□□ -2.14
VPS53-213ENST00000572334 LCE3DQ9BYE3 92 aa1.68□□□□□ -2.14
VPS53-213ENST00000572334 PRM1P04553 51 aa1.63□□□□□ -2.15
VPS53-213ENST00000572334 LCE1CQ5T751 118 aa1.61□□□□□ -2.15
VPS53-213ENST00000572334 LCE1BQ5T7P3 118 aa1.61□□□□□ -2.15
VPS53-213ENST00000572334 LCE1FQ5T754 118 aa1.56□□□□□ -2.16
VPS53-213ENST00000572334 KRTAP21-2Q3LI59 83 aa1.36□□□□□ -2.19
VPS53-213ENST00000572334 PHGR1C9JFL3 82 aa1.34□□□□□ -2.19
VPS53-213ENST00000572334 MUC19Q7Z5P9 8384 aa1.23□□□□□ -2.21
VPS53-213ENST00000572334 KRTAP21-1Q3LI58 79 aa1.11□□□□□ -2.23
VPS53-213ENST00000572334 MUC16Q8WXI7 14507 aa0.88□□□□□ -2.27
Retrieved 78 of 20,778 RNA–protein pairs in 92.3 ms