RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 KRTAP2-3P0C7H8 128 aa2.31□□□□□ -2.04
LDLR-209ENST00000558528 KRTAP2-4Q9BYR9 128 aa2.31□□□□□ -2.04
LDLR-209ENST00000558528 A6NN06 94 aa2.3□□□□□ -2.04
LDLR-209ENST00000558528 KRTAP10-10P60014 251 aa2.3□□□□□ -2.04
LDLR-209ENST00000558528 MDN1Q9NU22 5596 aa2.3□□□□□ -2.04
LDLR-209ENST00000558528 KRTAP10-5P60370 271 aa2.29□□□□□ -2.04
LDLR-209ENST00000558528 KRTAP19-6Q3LI70 58 aa2.29□□□□□ -2.04
LDLR-209ENST00000558528 KRTAP12-2P59991 146 aa2.28□□□□□ -2.04
LDLR-209ENST00000558528 MT2AP02795 61 aa2.27□□□□□ -2.05
LDLR-209ENST00000558528 SPRR2GQ9BYE4 73 aa2.26□□□□□ -2.05
LDLR-209ENST00000558528 A0A0D9SG42 100 aa2.25□□□□□ -2.05
LDLR-209ENST00000558528 PLAC4Q8WY50 150 aa2.25□□□□□ -2.05
LDLR-209ENST00000558528 MT1FP04733 61 aa2.24□□□□□ -2.05
LDLR-209ENST00000558528 KRTAP13-4Q3LI77 160 aa2.24□□□□□ -2.05
LDLR-209ENST00000558528 LCE3EQ5T5B0 92 aa2.24□□□□□ -2.05
LDLR-209ENST00000558528 KRTAP12-1P59990 96 aa2.21□□□□□ -2.06
LDLR-209ENST00000558528 KRTAP19-8Q3LI54 63 aa2.21□□□□□ -2.06
LDLR-209ENST00000558528 LCE1EQ5T753 118 aa2.2□□□□□ -2.06
LDLR-209ENST00000558528 KRTAP5-3Q6L8H2 238 aa2.2□□□□□ -2.06
LDLR-209ENST00000558528 KRTAP2-1Q9BYU5 128 aa2.2□□□□□ -2.06
LDLR-209ENST00000558528 KRTAP5-9P26371 169 aa2.19□□□□□ -2.06
LDLR-209ENST00000558528 INE1O15225 51 aa2.16□□□□□ -2.06
LDLR-209ENST00000558528 MT1BP07438 61 aa2.12□□□□□ -2.07
LDLR-209ENST00000558528 TNP1P09430 55 aa2.12□□□□□ -2.07
LDLR-209ENST00000558528 PP632Q6XCG6 107 aa2.08□□□□□ -2.08
LDLR-209ENST00000558528 C10orf95Q9H7T3 257 aa2.08□□□□□ -2.08
LDLR-209ENST00000558528 KRTAP10-7P60409 375 aaPredicted RBP2.07□□□□□ -2.08
LDLR-209ENST00000558528 AHNAK2Q8IVF2 5795 aa2.05□□□□□ -2.08
LDLR-209ENST00000558528 MT1XP80297 61 aa2.05□□□□□ -2.08
LDLR-209ENST00000558528 SPRR2EP22531 72 aa2.04□□□□□ -2.08
LDLR-209ENST00000558528 SPRR2BP35325 72 aa2.04□□□□□ -2.08
LDLR-209ENST00000558528 SPRR2AP35326 72 aa2.04□□□□□ -2.08
LDLR-209ENST00000558528 DSTQ03001 7570 aaKnown RBP2.01□□□□□ -2.09
LDLR-209ENST00000558528 KRTAP9-6A8MVA2 160 aa2□□□□□ -2.09
LDLR-209ENST00000558528 KRTAP5-10Q6L8G5 202 aa2□□□□□ -2.09
LDLR-209ENST00000558528 LCE3DQ9BYE3 92 aa1.99□□□□□ -2.09
LDLR-209ENST00000558528 HMCN1Q96RW7 5635 aa1.99□□□□□ -2.09
LDLR-209ENST00000558528 SPRR2DP22532 72 aa1.98□□□□□ -2.09
LDLR-209ENST00000558528 KRTAP5-7Q6L8G8 165 aa1.98□□□□□ -2.09
LDLR-209ENST00000558528 SPRR2FQ96RM1 72 aa1.96□□□□□ -2.1
LDLR-209ENST00000558528 KRTAP8-1Q8IUC2 63 aa1.94□□□□□ -2.1
LDLR-209ENST00000558528 LCE3AQ5TA76 89 aa1.93□□□□□ -2.1
LDLR-209ENST00000558528 KRTAP12-3P60328 96 aa1.9□□□□□ -2.11
LDLR-209ENST00000558528 KRTAP19-5Q3LI72 72 aa1.86□□□□□ -2.11
LDLR-209ENST00000558528 AHNAKQ09666 5890 aaKnown RBP1.86□□□□□ -2.11
LDLR-209ENST00000558528 KRTAP19-7Q3SYF9 63 aa1.83□□□□□ -2.12
LDLR-209ENST00000558528 MT1EP04732 61 aa1.81□□□□□ -2.12
LDLR-209ENST00000558528 MT1GP13640 62 aa1.8□□□□□ -2.12
LDLR-209ENST00000558528 KRTAP5-11Q6L8G4 156 aa1.8□□□□□ -2.12
LDLR-209ENST00000558528 KRTAP19-3Q7Z4W3 81 aa1.78□□□□□ -2.12
LDLR-209ENST00000558528 MUC5BQ9HC84 5762 aaPredicted RBP1.78□□□□□ -2.12
LDLR-209ENST00000558528 MT1LQ93083 61 aa1.77□□□□□ -2.13
LDLR-209ENST00000558528 MUC5ACP98088 5654 aa1.77□□□□□ -2.13
LDLR-209ENST00000558528 MT4P47944 62 aa1.76□□□□□ -2.13
LDLR-209ENST00000558528 KRTAP12-4P60329 112 aa1.72□□□□□ -2.13
LDLR-209ENST00000558528 MT1MQ8N339 61 aa1.71□□□□□ -2.14
LDLR-209ENST00000558528 KRTAP5-4Q6L8H1 288 aa1.66□□□□□ -2.14
LDLR-209ENST00000558528 KRTAP5-5Q701N2 237 aaPredicted RBP1.59□□□□□ -2.15
LDLR-209ENST00000558528 KRTAP4-3Q9BYR4 195 aa1.59□□□□□ -2.15
LDLR-209ENST00000558528 KRTAP20-2Q3LI61 65 aa1.57□□□□□ -2.16
LDLR-209ENST00000558528 KRTAP5-8O75690 187 aa1.56□□□□□ -2.16
LDLR-209ENST00000558528 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.55□□□□□ -2.16
LDLR-209ENST00000558528 MT1AP04731 61 aa1.53□□□□□ -2.16
LDLR-209ENST00000558528 LCE1CQ5T751 118 aa1.5□□□□□ -2.17
LDLR-209ENST00000558528 LCE1BQ5T7P3 118 aa1.5□□□□□ -2.17
LDLR-209ENST00000558528 SYNE1Q8NF91 8797 aaKnown RBP1.48□□□□□ -2.17
LDLR-209ENST00000558528 KRTAP5-1Q6L8H4 278 aa1.48□□□□□ -2.17
LDLR-209ENST00000558528 KRTAP6-1Q3LI64 71 aa1.47□□□□□ -2.17
LDLR-209ENST00000558528 KRTAP5-2Q701N4 177 aa1.46□□□□□ -2.18
LDLR-209ENST00000558528 OBSCNQ5VST9 7968 aa1.39□□□□□ -2.19
LDLR-209ENST00000558528 KRTAP6-2Q3LI66 62 aa1.36□□□□□ -2.19
LDLR-209ENST00000558528 KRTAP4-4Q9BYR3 166 aa1.24□□□□□ -2.21
LDLR-209ENST00000558528 PHGR1C9JFL3 82 aa1.16□□□□□ -2.22
LDLR-209ENST00000558528 PRM1P04553 51 aa1.09□□□□□ -2.23
LDLR-209ENST00000558528 MUC19Q7Z5P9 8384 aa1.05□□□□□ -2.24
LDLR-209ENST00000558528 KRTAP21-2Q3LI59 83 aa0.99□□□□□ -2.25
LDLR-209ENST00000558528 KRTAP21-1Q3LI58 79 aa0.89□□□□□ -2.27
LDLR-209ENST00000558528 MUC16Q8WXI7 14507 aa0.67□□□□□ -2.3
Retrieved 78 of 20,778 RNA–protein pairs in 331.7 ms