RNA–Protein interactions for RNA: ENST00000558400.1

TPM1-213, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-213ENST00000558400 KRTAP13-4Q3LI77 160 aa3.44□□□□□ -1.86
TPM1-213ENST00000558400 CAMK2N1Q7Z7J9 78 aa3.42□□□□□ -1.86
TPM1-213ENST00000558400 KRTAP8-1Q8IUC2 63 aa3.42□□□□□ -1.86
TPM1-213ENST00000558400 SPRR2FQ96RM1 72 aa3.42□□□□□ -1.86
TPM1-213ENST00000558400 SPRR2DP22532 72 aa3.39□□□□□ -1.87
TPM1-213ENST00000558400 KRTAP10-12P60413 245 aa3.39□□□□□ -1.87
TPM1-213ENST00000558400 MIR22HGQ0VDD5 57 aa3.38□□□□□ -1.87
TPM1-213ENST00000558400 A0A0D9SG42 100 aa3.37□□□□□ -1.87
TPM1-213ENST00000558400 UQCR11O14957 56 aa3.37□□□□□ -1.87
TPM1-213ENST00000558400 KRTAP10-7P60409 375 aaPredicted RBP3.37□□□□□ -1.87
TPM1-213ENST00000558400 SPATA8Q6RVD6 105 aa3.37□□□□□ -1.87
TPM1-213ENST00000558400 CDC42SE1Q9NRR8 79 aa3.37□□□□□ -1.87
TPM1-213ENST00000558400 PRO0628Q9UI54 55 aa3.35□□□□□ -1.87
TPM1-213ENST00000558400 SPINT4Q6UDR6 99 aa3.34□□□□□ -1.87
TPM1-213ENST00000558400 KRTAP12-1P59990 96 aa3.31□□□□□ -1.88
TPM1-213ENST00000558400 DSTQ03001 7570 aaKnown RBP3.28□□□□□ -1.89
TPM1-213ENST00000558400 KRTAP5-11Q6L8G4 156 aa3.27□□□□□ -1.89
TPM1-213ENST00000558400 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.26□□□□□ -1.89
TPM1-213ENST00000558400 PMAIP1Q13794 54 aa3.24□□□□□ -1.89
TPM1-213ENST00000558400 K7ERS5 55 aa3.19□□□□□ -1.9
TPM1-213ENST00000558400 TNP1P09430 55 aa3.19□□□□□ -1.9
TPM1-213ENST00000558400 A0A0A0MQY5 61 aa3.17□□□□□ -1.9
TPM1-213ENST00000558400 KRTAP19-7Q3SYF9 63 aa3.16□□□□□ -1.9
TPM1-213ENST00000558400 C10orf95Q9H7T3 257 aa3.15□□□□□ -1.91
TPM1-213ENST00000558400 AHNAK2Q8IVF2 5795 aa3.14□□□□□ -1.91
TPM1-213ENST00000558400 MT1EP04732 61 aa3.13□□□□□ -1.91
TPM1-213ENST00000558400 KRTAP5-10Q6L8G5 202 aa3.12□□□□□ -1.91
TPM1-213ENST00000558400 KRTAP19-3Q7Z4W3 81 aa3.12□□□□□ -1.91
TPM1-213ENST00000558400 KTN1-AS1Q86SY8 53 aa3.12□□□□□ -1.91
TPM1-213ENST00000558400 PRAC1Q96KF2 57 aa3.12□□□□□ -1.91
TPM1-213ENST00000558400 KRTAP19-5Q3LI72 72 aa3.11□□□□□ -1.91
TPM1-213ENST00000558400 MT1GP13640 62 aa3.09□□□□□ -1.91
TPM1-213ENST00000558400 ROMO1P60602 79 aa3.08□□□□□ -1.92
TPM1-213ENST00000558400 PP632Q6XCG6 107 aa3.08□□□□□ -1.92
TPM1-213ENST00000558400 HMCN1Q96RW7 5635 aa3.08□□□□□ -1.92
TPM1-213ENST00000558400 LCE3AQ5TA76 89 aa3.07□□□□□ -1.92
TPM1-213ENST00000558400 KRTAP5-7Q6L8G8 165 aa3.07□□□□□ -1.92
TPM1-213ENST00000558400 LCE1EQ5T753 118 aa3.06□□□□□ -1.92
TPM1-213ENST00000558400 KRTAP25-1Q3LHN0 102 aa3.05□□□□□ -1.92
TPM1-213ENST00000558400 MT1LQ93083 61 aa3.01□□□□□ -1.93
TPM1-213ENST00000558400 MT4P47944 62 aa2.99□□□□□ -1.93
TPM1-213ENST00000558400 KRTAP12-3P60328 96 aa2.99□□□□□ -1.93
TPM1-213ENST00000558400 SPRR5A0A1B0GTR4 108 aa2.98□□□□□ -1.93
TPM1-213ENST00000558400 MT1MQ8N339 61 aa2.98□□□□□ -1.93
TPM1-213ENST00000558400 KRTAP4-3Q9BYR4 195 aa2.86□□□□□ -1.95
TPM1-213ENST00000558400 KRTAP5-1Q6L8H4 278 aa2.84□□□□□ -1.95
TPM1-213ENST00000558400 MT3P25713 68 aa2.83□□□□□ -1.96
TPM1-213ENST00000558400 KRTAP5-4Q6L8H1 288 aa2.82□□□□□ -1.96
TPM1-213ENST00000558400 LCE3CQ5T5A8 94 aa2.76□□□□□ -1.97
TPM1-213ENST00000558400 KRTAP4-4Q9BYR3 166 aa2.74□□□□□ -1.97
TPM1-213ENST00000558400 AHNAKQ09666 5890 aaKnown RBP2.73□□□□□ -1.97
TPM1-213ENST00000558400 KRTAP9-6A8MVA2 160 aa2.73□□□□□ -1.97
TPM1-213ENST00000558400 LCE1FQ5T754 118 aa2.72□□□□□ -1.97
TPM1-213ENST00000558400 KRTAP5-5Q701N2 237 aaPredicted RBP2.72□□□□□ -1.97
TPM1-213ENST00000558400 KRTAP12-4P60329 112 aa2.7□□□□□ -1.98
TPM1-213ENST00000558400 KRTAP20-2Q3LI61 65 aa2.7□□□□□ -1.98
TPM1-213ENST00000558400 MUC5ACP98088 5654 aa2.68□□□□□ -1.98
TPM1-213ENST00000558400 MUC5BQ9HC84 5762 aaPredicted RBP2.62□□□□□ -1.99
TPM1-213ENST00000558400 MT1AP04731 61 aa2.58□□□□□ -2
TPM1-213ENST00000558400 NDUFAF8A1L188 74 aa2.57□□□□□ -2
TPM1-213ENST00000558400 KRTAP5-8O75690 187 aa2.54□□□□□ -2
TPM1-213ENST00000558400 KRTAP6-1Q3LI64 71 aa2.53□□□□□ -2
TPM1-213ENST00000558400 OBSCNQ5VST9 7968 aa2.51□□□□□ -2.01
TPM1-213ENST00000558400 SYNE1Q8NF91 8797 aaKnown RBP2.49□□□□□ -2.01
TPM1-213ENST00000558400 KRTAP5-2Q701N4 177 aa2.46□□□□□ -2.02
TPM1-213ENST00000558400 LUZP6Q538Z0 58 aa2.45□□□□□ -2.02
TPM1-213ENST00000558400 KRTAP6-2Q3LI66 62 aa2.41□□□□□ -2.02
TPM1-213ENST00000558400 LCE3EQ5T5B0 92 aa2.36□□□□□ -2.03
TPM1-213ENST00000558400 LCE3DQ9BYE3 92 aa2.03□□□□□ -2.08
TPM1-213ENST00000558400 LCE1CQ5T751 118 aa2.01□□□□□ -2.09
TPM1-213ENST00000558400 LCE1BQ5T7P3 118 aa2.01□□□□□ -2.09
TPM1-213ENST00000558400 INE1O15225 51 aa1.96□□□□□ -2.1
TPM1-213ENST00000558400 PHGR1C9JFL3 82 aa1.84□□□□□ -2.11
TPM1-213ENST00000558400 MUC19Q7Z5P9 8384 aa1.73□□□□□ -2.13
TPM1-213ENST00000558400 KRTAP21-2Q3LI59 83 aa1.67□□□□□ -2.14
TPM1-213ENST00000558400 PRM1P04553 51 aa1.66□□□□□ -2.14
TPM1-213ENST00000558400 KRTAP21-1Q3LI58 79 aa1.4□□□□□ -2.19
TPM1-213ENST00000558400 MUC16Q8WXI7 14507 aa1.06□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 39.1 ms