RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 SPRR2FQ96RM1 72 aa4.92□□□□□ -1.62
VPS33B-204ENST00000554660 KRTAP23-1A1A580 65 aa4.9□□□□□ -1.63
VPS33B-204ENST00000554660 KRTAP4-12Q9BQ66 201 aa4.9□□□□□ -1.63
VPS33B-204ENST00000554660 KRTAP5-3Q6L8H2 238 aa4.86□□□□□ -1.63
VPS33B-204ENST00000554660 CAMK2N1Q7Z7J9 78 aa4.85□□□□□ -1.63
VPS33B-204ENST00000554660 KRTAP2-2Q9BYT5 123 aa4.84□□□□□ -1.63
VPS33B-204ENST00000554660 KRTAP2-1Q9BYU5 128 aa4.84□□□□□ -1.63
VPS33B-204ENST00000554660 LCE1AQ5T7P2 110 aa4.81□□□□□ -1.64
VPS33B-204ENST00000554660 GPR98Q8WXG9 6306 aa4.8□□□□□ -1.64
VPS33B-204ENST00000554660 PLAC4Q8WY50 150 aa4.79□□□□□ -1.64
VPS33B-204ENST00000554660 KRTAP8-1Q8IUC2 63 aa4.78□□□□□ -1.64
VPS33B-204ENST00000554660 SPRR2DP22532 72 aa4.77□□□□□ -1.65
VPS33B-204ENST00000554660 NDUFAF8A1L188 74 aa4.76□□□□□ -1.65
VPS33B-204ENST00000554660 TNP1P09430 55 aa4.76□□□□□ -1.65
VPS33B-204ENST00000554660 MT1XP80297 61 aa4.74□□□□□ -1.65
VPS33B-204ENST00000554660 KRTAP4-2Q9BYR5 136 aa4.74□□□□□ -1.65
VPS33B-204ENST00000554660 PRO2289Q9P1D8 64 aa4.72□□□□□ -1.65
VPS33B-204ENST00000554660 DSTQ03001 7570 aaKnown RBP4.68□□□□□ -1.66
VPS33B-204ENST00000554660 LCE1DQ5T752 114 aa4.66□□□□□ -1.66
VPS33B-204ENST00000554660 KRTAP4-9Q9BYQ8 210 aa4.63□□□□□ -1.67
VPS33B-204ENST00000554660 LUZP6Q538Z0 58 aa4.61□□□□□ -1.67
VPS33B-204ENST00000554660 SPRR5A0A1B0GTR4 108 aa4.59□□□□□ -1.67
VPS33B-204ENST00000554660 KRTAP10-7P60409 375 aaPredicted RBP4.54□□□□□ -1.68
VPS33B-204ENST00000554660 KRTAP19-4Q3LI73 84 aa4.48□□□□□ -1.69
VPS33B-204ENST00000554660 KRTAP10-12P60413 245 aa4.47□□□□□ -1.69
VPS33B-204ENST00000554660 A0A0A0MQY5 61 aa4.42□□□□□ -1.7
VPS33B-204ENST00000554660 LCE4AQ5TA78 99 aa4.42□□□□□ -1.7
VPS33B-204ENST00000554660 LCE3AQ5TA76 89 aa4.4□□□□□ -1.71
VPS33B-204ENST00000554660 HMCN1Q96RW7 5635 aa4.34□□□□□ -1.71
VPS33B-204ENST00000554660 KRTAP4-11Q9BYQ6 195 aa4.33□□□□□ -1.72
VPS33B-204ENST00000554660 AHNAK2Q8IVF2 5795 aa4.31□□□□□ -1.72
VPS33B-204ENST00000554660 LCE5AQ5TCM9 118 aa4.3□□□□□ -1.72
VPS33B-204ENST00000554660 KRTAP12-3P60328 96 aa4.25□□□□□ -1.73
VPS33B-204ENST00000554660 KRTAP19-7Q3SYF9 63 aa4.24□□□□□ -1.73
VPS33B-204ENST00000554660 KRTAP19-3Q7Z4W3 81 aa4.24□□□□□ -1.73
VPS33B-204ENST00000554660 MT1EP04732 61 aa4.23□□□□□ -1.73
VPS33B-204ENST00000554660 MT4P47944 62 aa4.22□□□□□ -1.73
VPS33B-204ENST00000554660 KRTAP5-10Q6L8G5 202 aa4.14□□□□□ -1.75
VPS33B-204ENST00000554660 INE1O15225 51 aa4.08□□□□□ -1.76
VPS33B-204ENST00000554660 MT1GP13640 62 aa4.08□□□□□ -1.76
VPS33B-204ENST00000554660 KRTAP19-5Q3LI72 72 aa4.05□□□□□ -1.76
VPS33B-204ENST00000554660 MT1MQ8N339 61 aa4.05□□□□□ -1.76
VPS33B-204ENST00000554660 KRTAP5-4Q6L8H1 288 aa4.03□□□□□ -1.76
VPS33B-204ENST00000554660 KRTAP5-7Q6L8G8 165 aa4.02□□□□□ -1.77
VPS33B-204ENST00000554660 LCE3CQ5T5A8 94 aa4.01□□□□□ -1.77
VPS33B-204ENST00000554660 KRTAP4-3Q9BYR4 195 aa4□□□□□ -1.77
VPS33B-204ENST00000554660 MT1LQ93083 61 aa3.98□□□□□ -1.77
VPS33B-204ENST00000554660 KRTAP20-2Q3LI61 65 aa3.85□□□□□ -1.79
VPS33B-204ENST00000554660 SYNE1Q8NF91 8797 aaKnown RBP3.79□□□□□ -1.8
VPS33B-204ENST00000554660 KRTAP9-6A8MVA2 160 aa3.75□□□□□ -1.81
VPS33B-204ENST00000554660 KRTAP5-5Q701N2 237 aaPredicted RBP3.73□□□□□ -1.81
VPS33B-204ENST00000554660 KRTAP12-4P60329 112 aa3.69□□□□□ -1.82
VPS33B-204ENST00000554660 AHNAKQ09666 5890 aaKnown RBP3.67□□□□□ -1.82
VPS33B-204ENST00000554660 MUC5ACP98088 5654 aa3.62□□□□□ -1.83
VPS33B-204ENST00000554660 MUC5BQ9HC84 5762 aaPredicted RBP3.57□□□□□ -1.84
VPS33B-204ENST00000554660 OBSCNQ5VST9 7968 aa3.52□□□□□ -1.85
VPS33B-204ENST00000554660 KRTAP5-8O75690 187 aa3.49□□□□□ -1.85
VPS33B-204ENST00000554660 KRTAP5-2Q701N4 177 aa3.48□□□□□ -1.85
VPS33B-204ENST00000554660 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.42□□□□□ -1.86
VPS33B-204ENST00000554660 KRTAP6-1Q3LI64 71 aa3.39□□□□□ -1.87
VPS33B-204ENST00000554660 MT1AP04731 61 aa3.37□□□□□ -1.87
VPS33B-204ENST00000554660 KRTAP6-2Q3LI66 62 aa3.3□□□□□ -1.88
VPS33B-204ENST00000554660 KRTAP5-1Q6L8H4 278 aa3.19□□□□□ -1.9
VPS33B-204ENST00000554660 MT3P25713 68 aa3.14□□□□□ -1.91
VPS33B-204ENST00000554660 LCE3DQ9BYE3 92 aa3.08□□□□□ -1.92
VPS33B-204ENST00000554660 LCE3EQ5T5B0 92 aa3.07□□□□□ -1.92
VPS33B-204ENST00000554660 KRTAP5-11Q6L8G4 156 aa2.91□□□□□ -1.94
VPS33B-204ENST00000554660 LCE1EQ5T753 118 aa2.89□□□□□ -1.95
VPS33B-204ENST00000554660 KRTAP4-4Q9BYR3 166 aa2.86□□□□□ -1.95
VPS33B-204ENST00000554660 PRM1P04553 51 aa2.83□□□□□ -1.96
VPS33B-204ENST00000554660 LCE1BQ5T7P3 118 aa2.81□□□□□ -1.96
VPS33B-204ENST00000554660 LCE1FQ5T754 118 aa2.75□□□□□ -1.97
VPS33B-204ENST00000554660 LCE1CQ5T751 118 aa2.69□□□□□ -1.98
VPS33B-204ENST00000554660 PHGR1C9JFL3 82 aa2.44□□□□□ -2.02
VPS33B-204ENST00000554660 KRTAP21-2Q3LI59 83 aa2.23□□□□□ -2.05
VPS33B-204ENST00000554660 MUC19Q7Z5P9 8384 aa2.18□□□□□ -2.06
VPS33B-204ENST00000554660 KRTAP21-1Q3LI58 79 aa1.88□□□□□ -2.11
VPS33B-204ENST00000554660 MUC16Q8WXI7 14507 aa1.49□□□□□ -2.17
Retrieved 78 of 20,778 RNA–protein pairs in 111.3 ms