RNA–Protein interactions for RNA: ENST00000544983.1

SNHG1-221, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 870 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-221ENST00000544983 SPRR2EP22531 72 aa4.43□□□□□ -1.7
SNHG1-221ENST00000544983 SPRR2BP35325 72 aa4.43□□□□□ -1.7
SNHG1-221ENST00000544983 SPRR2AP35326 72 aa4.43□□□□□ -1.7
SNHG1-221ENST00000544983 ROMO1P60602 79 aa4.41□□□□□ -1.7
SNHG1-221ENST00000544983 KRTAP23-1A1A580 65 aa4.38□□□□□ -1.71
SNHG1-221ENST00000544983 KRTAP19-7Q3SYF9 63 aa4.38□□□□□ -1.71
SNHG1-221ENST00000544983 LCE3AQ5TA76 89 aa4.38□□□□□ -1.71
SNHG1-221ENST00000544983 BRK1Q8WUW1 75 aa4.38□□□□□ -1.71
SNHG1-221ENST00000544983 LCE1AQ5T7P2 110 aa4.36□□□□□ -1.71
SNHG1-221ENST00000544983 KRTAP19-5Q3LI72 72 aa4.34□□□□□ -1.71
SNHG1-221ENST00000544983 KRTAP4-7Q9BYR0 210 aa4.34□□□□□ -1.71
SNHG1-221ENST00000544983 MT1EP04732 61 aa4.33□□□□□ -1.72
SNHG1-221ENST00000544983 LCE1DQ5T752 114 aa4.32□□□□□ -1.72
SNHG1-221ENST00000544983 SPRR2DP22532 72 aa4.29□□□□□ -1.72
SNHG1-221ENST00000544983 PP632Q6XCG6 107 aa4.28□□□□□ -1.72
SNHG1-221ENST00000544983 KRTAP12-3P60328 96 aa4.27□□□□□ -1.73
SNHG1-221ENST00000544983 DSTQ03001 7570 aaKnown RBP4.27□□□□□ -1.73
SNHG1-221ENST00000544983 KRTAP19-3Q7Z4W3 81 aa4.26□□□□□ -1.73
SNHG1-221ENST00000544983 LCE5AQ5TCM9 118 aa4.23□□□□□ -1.73
SNHG1-221ENST00000544983 KRTAP4-9Q9BYQ8 210 aa4.23□□□□□ -1.73
SNHG1-221ENST00000544983 MT1GP13640 62 aa4.22□□□□□ -1.73
SNHG1-221ENST00000544983 MT1LQ93083 61 aa4.2□□□□□ -1.74
SNHG1-221ENST00000544983 KRTAP19-4Q3LI73 84 aa4.18□□□□□ -1.74
SNHG1-221ENST00000544983 KRTAP4-2Q9BYR5 136 aa4.18□□□□□ -1.74
SNHG1-221ENST00000544983 PMAIP1Q13794 54 aa4.17□□□□□ -1.74
SNHG1-221ENST00000544983 PRO0628Q9UI54 55 aa4.14□□□□□ -1.75
SNHG1-221ENST00000544983 LCE4AQ5TA78 99 aa4.13□□□□□ -1.75
SNHG1-221ENST00000544983 MT1MQ8N339 61 aa4.11□□□□□ -1.75
SNHG1-221ENST00000544983 KRTAP15-1Q3LI76 137 aa4.1□□□□□ -1.75
SNHG1-221ENST00000544983 KRTAP5-10Q6L8G5 202 aa4.09□□□□□ -1.75
SNHG1-221ENST00000544983 AHNAK2Q8IVF2 5795 aa4.08□□□□□ -1.76
SNHG1-221ENST00000544983 HMCN1Q96RW7 5635 aa4.06□□□□□ -1.76
SNHG1-221ENST00000544983 KRTAP4-11Q9BYQ6 195 aa4.06□□□□□ -1.76
SNHG1-221ENST00000544983 KRTAP5-7Q6L8G8 165 aa4.04□□□□□ -1.76
SNHG1-221ENST00000544983 LCE3CQ5T5A8 94 aa3.96□□□□□ -1.78
SNHG1-221ENST00000544983 SPRR5A0A1B0GTR4 108 aa3.93□□□□□ -1.78
SNHG1-221ENST00000544983 KRTAP4-3Q9BYR4 195 aa3.93□□□□□ -1.78
SNHG1-221ENST00000544983 H3BS24 57 aa3.91□□□□□ -1.78
SNHG1-221ENST00000544983 KTN1-AS1Q86SY8 53 aa3.87□□□□□ -1.79
SNHG1-221ENST00000544983 PRAC1Q96KF2 57 aa3.85□□□□□ -1.79
SNHG1-221ENST00000544983 MT4P47944 62 aa3.82□□□□□ -1.8
SNHG1-221ENST00000544983 KRTAP5-3Q6L8H2 238 aa3.82□□□□□ -1.8
SNHG1-221ENST00000544983 KRTAP5-4Q6L8H1 288 aa3.77□□□□□ -1.81
SNHG1-221ENST00000544983 KRTAP5-5Q701N2 237 aaPredicted RBP3.75□□□□□ -1.81
SNHG1-221ENST00000544983 KRTAP9-6A8MVA2 160 aa3.66□□□□□ -1.82
SNHG1-221ENST00000544983 AHNAKQ09666 5890 aaKnown RBP3.65□□□□□ -1.83
SNHG1-221ENST00000544983 KRTAP12-4P60329 112 aa3.63□□□□□ -1.83
SNHG1-221ENST00000544983 MT1AP04731 61 aa3.59□□□□□ -1.83
SNHG1-221ENST00000544983 MUC5ACP98088 5654 aa3.53□□□□□ -1.84
SNHG1-221ENST00000544983 A0A0A0MQY5 61 aa3.52□□□□□ -1.85
SNHG1-221ENST00000544983 KRTAP20-2Q3LI61 65 aa3.51□□□□□ -1.85
SNHG1-221ENST00000544983 KRTAP6-1Q3LI64 71 aa3.51□□□□□ -1.85
SNHG1-221ENST00000544983 MUC5BQ9HC84 5762 aaPredicted RBP3.47□□□□□ -1.85
SNHG1-221ENST00000544983 SYNE1Q8NF91 8797 aaKnown RBP3.43□□□□□ -1.86
SNHG1-221ENST00000544983 KRTAP5-2Q701N4 177 aa3.35□□□□□ -1.87
SNHG1-221ENST00000544983 LUZP6Q538Z0 58 aa3.33□□□□□ -1.88
SNHG1-221ENST00000544983 KRTAP6-2Q3LI66 62 aa3.31□□□□□ -1.88
SNHG1-221ENST00000544983 MT3P25713 68 aa3.3□□□□□ -1.88
SNHG1-221ENST00000544983 KRTAP5-8O75690 187 aa3.28□□□□□ -1.88
SNHG1-221ENST00000544983 OBSCNQ5VST9 7968 aa3.05□□□□□ -1.92
SNHG1-221ENST00000544983 LCE1EQ5T753 118 aa2.98□□□□□ -1.93
SNHG1-221ENST00000544983 KRTAP5-1Q6L8H4 278 aa2.94□□□□□ -1.94
SNHG1-221ENST00000544983 LCE3DQ9BYE3 92 aa2.93□□□□□ -1.94
SNHG1-221ENST00000544983 NDUFAF8A1L188 74 aa2.9□□□□□ -1.95
SNHG1-221ENST00000544983 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.84□□□□□ -1.95
SNHG1-221ENST00000544983 LCE3EQ5T5B0 92 aa2.81□□□□□ -1.96
SNHG1-221ENST00000544983 KRTAP5-11Q6L8G4 156 aa2.77□□□□□ -1.97
SNHG1-221ENST00000544983 LCE1CQ5T751 118 aa2.75□□□□□ -1.97
SNHG1-221ENST00000544983 LCE1BQ5T7P3 118 aa2.75□□□□□ -1.97
SNHG1-221ENST00000544983 INE1O15225 51 aa2.46□□□□□ -2.02
SNHG1-221ENST00000544983 PHGR1C9JFL3 82 aa2.4□□□□□ -2.03
SNHG1-221ENST00000544983 KRTAP4-4Q9BYR3 166 aa2.36□□□□□ -2.03
SNHG1-221ENST00000544983 LCE1FQ5T754 118 aa2.35□□□□□ -2.03
SNHG1-221ENST00000544983 KRTAP21-2Q3LI59 83 aa2.32□□□□□ -2.04
SNHG1-221ENST00000544983 PRM1P04553 51 aa2.23□□□□□ -2.05
SNHG1-221ENST00000544983 MUC19Q7Z5P9 8384 aa1.94□□□□□ -2.1
SNHG1-221ENST00000544983 KRTAP21-1Q3LI58 79 aa1.84□□□□□ -2.11
SNHG1-221ENST00000544983 MUC16Q8WXI7 14507 aa1.31□□□□□ -2.2
Retrieved 78 of 20,778 RNA–protein pairs in 6.2 ms