RNA–Protein interactions for RNA: ENST00000543695.5

LDHA-222, Transcript of lactate dehydrogenase A, human

TSL 5

Gene LDHA, Length 554 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LDHA-222	ENST00000543695	KRTAP10-5	P60370	271 aa		4.56	□□□□□ -1.68
LDHA-222	ENST00000543695	MT1X	P80297	61 aa		4.56	□□□□□ -1.68
LDHA-222	ENST00000543695	NDUFAF8	A1L188	74 aa		4.52	□□□□□ -1.69
LDHA-222	ENST00000543695	LCE3A	Q5TA76	89 aa		4.52	□□□□□ -1.69
LDHA-222	ENST00000543695		H3BS24	57 aa		4.49	□□□□□ -1.69
LDHA-222	ENST00000543695	PRO2289	Q9P1D8	64 aa		4.48	□□□□□ -1.69
LDHA-222	ENST00000543695	KRTAP8-1	Q8IUC2	63 aa		4.46	□□□□□ -1.7
LDHA-222	ENST00000543695	SPRR5	A0A1B0GTR4	108 aa		4.43	□□□□□ -1.7
LDHA-222	ENST00000543695	KRTAP10-12	P60413	245 aa		4.43	□□□□□ -1.7
LDHA-222	ENST00000543695	LUZP6	Q538Z0	58 aa		4.4	□□□□□ -1.71
LDHA-222	ENST00000543695	KRTAP10-7	P60409	375 aa	Predicted RBP	4.38	□□□□□ -1.71
LDHA-222	ENST00000543695	KRTAP5-9	P26371	169 aa		4.37	□□□□□ -1.71
LDHA-222	ENST00000543695	MUC12	Q9UKN1	5478 aa		4.34	□□□□□ -1.71
LDHA-222	ENST00000543695	NEB	P20929	6669 aa		4.33	□□□□□ -1.72
LDHA-222	ENST00000543695	KRTAP12-3	P60328	96 aa		4.32	□□□□□ -1.72
LDHA-222	ENST00000543695	KRTAP20-1	Q3LI63	56 aa		4.32	□□□□□ -1.72
LDHA-222	ENST00000543695	KMT2D	O14686	5537 aa		4.27	□□□□□ -1.73
LDHA-222	ENST00000543695	SPRR2F	Q96RM1	72 aa		4.23	□□□□□ -1.73
LDHA-222	ENST00000543695	MDN1	Q9NU22	5596 aa		4.21	□□□□□ -1.74
LDHA-222	ENST00000543695	KRTAP2-3	P0C7H8	128 aa		4.2	□□□□□ -1.74
LDHA-222	ENST00000543695	KRTAP2-4	Q9BYR9	128 aa		4.2	□□□□□ -1.74
LDHA-222	ENST00000543695	KRTAP19-5	Q3LI72	72 aa		4.19	□□□□□ -1.74
LDHA-222	ENST00000543695	SPRR2E	P22531	72 aa		4.18	□□□□□ -1.74
LDHA-222	ENST00000543695	SPRR2B	P35325	72 aa		4.18	□□□□□ -1.74
LDHA-222	ENST00000543695	SPRR2A	P35326	72 aa		4.18	□□□□□ -1.74
LDHA-222	ENST00000543695	LCE1A	Q5T7P2	110 aa		4.11	□□□□□ -1.75
LDHA-222	ENST00000543695	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	4.11	□□□□□ -1.75
LDHA-222	ENST00000543695		A0A0A0MQY5	61 aa		4.07	□□□□□ -1.76
LDHA-222	ENST00000543695	LCE3C	Q5T5A8	94 aa		4.07	□□□□□ -1.76
LDHA-222	ENST00000543695	KRTAP19-7	Q3SYF9	63 aa		4.06	□□□□□ -1.76
LDHA-222	ENST00000543695	KRTAP2-2	Q9BYT5	123 aa		4.06	□□□□□ -1.76
LDHA-222	ENST00000543695	KRTAP2-1	Q9BYU5	128 aa		4.06	□□□□□ -1.76
LDHA-222	ENST00000543695	SPRR2D	P22532	72 aa		4.05	□□□□□ -1.76
LDHA-222	ENST00000543695	MT1E	P04732	61 aa		3.98	□□□□□ -1.77
LDHA-222	ENST00000543695	MT1L	Q93083	61 aa		3.95	□□□□□ -1.78
LDHA-222	ENST00000543695	KRTAP5-11	Q6L8G4	156 aa		3.88	□□□□□ -1.79
LDHA-222	ENST00000543695	KRTAP9-6	A8MVA2	160 aa		3.84	□□□□□ -1.79
LDHA-222	ENST00000543695	INE1	O15225	51 aa		3.77	□□□□□ -1.81
LDHA-222	ENST00000543695	KRTAP19-3	Q7Z4W3	81 aa		3.77	□□□□□ -1.81
LDHA-222	ENST00000543695	MT1G	P13640	62 aa		3.76	□□□□□ -1.81
LDHA-222	ENST00000543695	DST	Q03001	7570 aa	Known RBP	3.74	□□□□□ -1.81
LDHA-222	ENST00000543695	MT1M	Q8N339	61 aa		3.73	□□□□□ -1.81
LDHA-222	ENST00000543695	GPR98	Q8WXG9	6306 aa		3.69	□□□□□ -1.82
LDHA-222	ENST00000543695	KRTAP4-3	Q9BYR4	195 aa		3.65	□□□□□ -1.83
LDHA-222	ENST00000543695	MT4	P47944	62 aa		3.54	□□□□□ -1.84
LDHA-222	ENST00000543695	KRTAP5-1	Q6L8H4	278 aa		3.52	□□□□□ -1.85
LDHA-222	ENST00000543695	LCE1E	Q5T753	118 aa		3.49	□□□□□ -1.85
LDHA-222	ENST00000543695	KRTAP5-4	Q6L8H1	288 aa		3.47	□□□□□ -1.85
LDHA-222	ENST00000543695	HMCN1	Q96RW7	5635 aa		3.46	□□□□□ -1.86
LDHA-222	ENST00000543695	KRTAP4-4	Q9BYR3	166 aa		3.41	□□□□□ -1.86
LDHA-222	ENST00000543695	MT1A	P04731	61 aa		3.37	□□□□□ -1.87
LDHA-222	ENST00000543695	KRTAP5-10	Q6L8G5	202 aa		3.36	□□□□□ -1.87
LDHA-222	ENST00000543695	AHNAK2	Q8IVF2	5795 aa		3.35	□□□□□ -1.87
LDHA-222	ENST00000543695	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.34	□□□□□ -1.87
LDHA-222	ENST00000543695	KRTAP6-1	Q3LI64	71 aa		3.31	□□□□□ -1.88
LDHA-222	ENST00000543695	KRTAP12-4	P60329	112 aa		3.29	□□□□□ -1.88
LDHA-222	ENST00000543695	KRTAP20-2	Q3LI61	65 aa		3.29	□□□□□ -1.88
LDHA-222	ENST00000543695	KRTAP5-7	Q6L8G8	165 aa		3.25	□□□□□ -1.89
LDHA-222	ENST00000543695	SYNE1	Q8NF91	8797 aa	Known RBP	3.17	□□□□□ -1.9
LDHA-222	ENST00000543695	LCE3D	Q9BYE3	92 aa		3.1	□□□□□ -1.91
LDHA-222	ENST00000543695	OBSCN	Q5VST9	7968 aa		3.08	□□□□□ -1.92
LDHA-222	ENST00000543695	LCE3E	Q5T5B0	92 aa		3.06	□□□□□ -1.92
LDHA-222	ENST00000543695	MT3	P25713	68 aa		3.03	□□□□□ -1.92
LDHA-222	ENST00000543695	KRTAP5-2	Q701N4	177 aa		3.02	□□□□□ -1.93
LDHA-222	ENST00000543695	KRTAP6-2	Q3LI66	62 aa		2.99	□□□□□ -1.93
LDHA-222	ENST00000543695	KRTAP5-8	O75690	187 aa		2.92	□□□□□ -1.94
LDHA-222	ENST00000543695	AHNAK	Q09666	5890 aa	Known RBP	2.81	□□□□□ -1.96
LDHA-222	ENST00000543695	PRM1	P04553	51 aa		2.8	□□□□□ -1.96
LDHA-222	ENST00000543695	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.76	□□□□□ -1.97
LDHA-222	ENST00000543695	MUC5AC	P98088	5654 aa		2.76	□□□□□ -1.97
LDHA-222	ENST00000543695	LCE1B	Q5T7P3	118 aa		2.47	□□□□□ -2.01
LDHA-222	ENST00000543695	LCE1C	Q5T751	118 aa		2.42	□□□□□ -2.02
LDHA-222	ENST00000543695	LCE1F	Q5T754	118 aa		2.39	□□□□□ -2.03
LDHA-222	ENST00000543695	KRTAP21-2	Q3LI59	83 aa		2.17	□□□□□ -2.06
LDHA-222	ENST00000543695	PHGR1	C9JFL3	82 aa		1.98	□□□□□ -2.09
LDHA-222	ENST00000543695	MUC19	Q7Z5P9	8384 aa		1.95	□□□□□ -2.1
LDHA-222	ENST00000543695	KRTAP21-1	Q3LI58	79 aa		1.79	□□□□□ -2.12
LDHA-222	ENST00000543695	MUC16	Q8WXI7	14507 aa		1.26	□□□□□ -2.21

Retrieved 78 of 20,778 RNA–protein pairs in 57.6 ms