RNA–Protein interactions for RNA: ENST00000540819.1

PRKDC-209, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 537 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-209ENST00000540819 FAT3Q8TDW7 4589 aa0.31□□□□□ -2.36
PRKDC-209ENST00000540819 ADGRG4Q8IZF6 3080 aa0.31□□□□□ -2.36
PRKDC-209ENST00000540819 TRIOO75962 3097 aa0.31□□□□□ -2.36
PRKDC-209ENST00000540819 NBPF19A0A087WUL8 3843 aa0.3□□□□□ -2.36
PRKDC-209ENST00000540819 SMR3BP02814 79 aaPredicted RBP0.3□□□□□ -2.36
PRKDC-209ENST00000540819 GOLGB1Q14789 3259 aaKnown RBP0.3□□□□□ -2.36
PRKDC-209ENST00000540819 PRUNE2Q8WUY3 3088 aa0.3□□□□□ -2.36
PRKDC-209ENST00000540819 APOBP04114 4563 aaKnown RBP0.3□□□□□ -2.36
PRKDC-209ENST00000540819 DNAH7Q8WXX0 4024 aa0.29□□□□□ -2.36
PRKDC-209ENST00000540819 WDFY3Q8IZQ1 3526 aa0.28□□□□□ -2.36
PRKDC-209ENST00000540819 CSMD2Q7Z408 3487 aa0.28□□□□□ -2.36
PRKDC-209ENST00000540819 MUC12Q9UKN1 5478 aa0.28□□□□□ -2.37
PRKDC-209ENST00000540819 UTRNP46939 3433 aa0.27□□□□□ -2.37
PRKDC-209ENST00000540819 USP34Q70CQ2 3546 aa0.27□□□□□ -2.37
PRKDC-209ENST00000540819 MYO15AQ9UKN7 3530 aa0.25□□□□□ -2.37
PRKDC-209ENST00000540819 XIRP2A4UGR9 3374 aa0.25□□□□□ -2.37
PRKDC-209ENST00000540819 DNAH14Q0VDD8 3507 aa0.24□□□□□ -2.37
PRKDC-209ENST00000540819 CDH23Q9H251 3354 aa0.24□□□□□ -2.37
PRKDC-209ENST00000540819 SMG1Q96Q15 3661 aaKnown RBP0.23□□□□□ -2.37
PRKDC-209ENST00000540819 DNAH1Q9P2D7 4330 aa0.22□□□□□ -2.37
PRKDC-209ENST00000540819 SPRR2GQ9BYE4 73 aa0.22□□□□□ -2.37
PRKDC-209ENST00000540819 DEFB1P60022 68 aa0.21□□□□□ -2.38
PRKDC-209ENST00000540819 PRCDQ00LT1 54 aa0.19□□□□□ -2.38
PRKDC-209ENST00000540819 VPS13CQ709C8 3753 aa0.19□□□□□ -2.38
PRKDC-209ENST00000540819 FAT1Q14517 4588 aa0.18□□□□□ -2.38
PRKDC-209ENST00000540819 DNAH8Q96JB1 4490 aa0.18□□□□□ -2.38
PRKDC-209ENST00000540819 KRTAP19-6Q3LI70 58 aa0.16□□□□□ -2.38
PRKDC-209ENST00000540819 DEFB104AQ8WTQ1 72 aa0.16□□□□□ -2.38
PRKDC-209ENST00000540819 MT4P47944 62 aa0.13□□□□□ -2.39
PRKDC-209ENST00000540819 K7EIM0 57 aa0.12□□□□□ -2.39
PRKDC-209ENST00000540819 TTTY10Q9BZA0 68 aa0.12□□□□□ -2.39
PRKDC-209ENST00000540819 STARD9Q9P2P6 4700 aa0.11□□□□□ -2.39
PRKDC-209ENST00000540819 MT1HP80294 61 aa0.1□□□□□ -2.39
PRKDC-209ENST00000540819 DYNC1H1Q14204 4646 aaKnown RBP0.08□□□□□ -2.4
PRKDC-209ENST00000540819 DNAH10Q8IVF4 4471 aa0.07□□□□□ -2.4
PRKDC-209ENST00000540819 DMDP11532 3685 aa0.07□□□□□ -2.4
PRKDC-209ENST00000540819 RHPN1-AS1Q9BWJ2 59 aa0.06□□□□□ -2.4
PRKDC-209ENST00000540819 CMYA5Q8N3K9 4069 aa0.05□□□□□ -2.4
PRKDC-209ENST00000540819 KRTAP19-7Q3SYF9 63 aa0.04□□□□□ -2.4
PRKDC-209ENST00000540819 DEFB136Q30KP8 78 aa0.03□□□□□ -2.4
PRKDC-209ENST00000540819 TRRAPQ9Y4A5 3859 aa0.02□□□□□ -2.41
PRKDC-209ENST00000540819 DNAH17Q9UFH2 4485 aa0.01□□□□□ -2.41
PRKDC-209ENST00000540819 MUC17Q685J3 4493 aa0.01□□□□□ -2.41
PRKDC-209ENST00000540819 H3BSH0 61 aa0□□□□□ -2.41
PRKDC-209ENST00000540819 MT1EP04732 61 aa0□□□□□ -2.41
PRKDC-209ENST00000540819 PLECQ15149 4684 aaKnown RBP0□□□□□ -2.41
PRKDC-209ENST00000540819 KRTAP20-2Q3LI61 65 aa-0.02□□□□□ -2.41
PRKDC-209ENST00000540819 DNAH5Q8TE73 4624 aa-0.03□□□□□ -2.41
PRKDC-209ENST00000540819 KRTAP6-1Q3LI64 71 aa-0.04□□□□□ -2.42
PRKDC-209ENST00000540819 TMEM167AQ8TBQ9 72 aa-0.06□□□□□ -2.42
PRKDC-209ENST00000540819 KRTAP19-8Q3LI54 63 aa-0.07□□□□□ -2.42
PRKDC-209ENST00000540819 MT1LQ93083 61 aa-0.08□□□□□ -2.42
PRKDC-209ENST00000540819 A0A096LNI7 61 aa-0.09□□□□□ -2.42
PRKDC-209ENST00000540819 H3BUX3 64 aa-0.09□□□□□ -2.42
PRKDC-209ENST00000540819 MT1XP80297 61 aa-0.14□□□□□ -2.43
PRKDC-209ENST00000540819 MT1GP13640 62 aa-0.16□□□□□ -2.44
PRKDC-209ENST00000540819 DEFB124Q8NES8 71 aa-0.16□□□□□ -2.44
PRKDC-209ENST00000540819 DEFB133Q30KQ1 61 aa-0.22□□□□□ -2.44
PRKDC-209ENST00000540819 HTN1P15515 57 aa-0.23□□□□□ -2.45
PRKDC-209ENST00000540819 RPL39P5Q59GN2 51 aa-0.23□□□□□ -2.45
PRKDC-209ENST00000540819 MT1MQ8N339 61 aa-0.23□□□□□ -2.45
PRKDC-209ENST00000540819 DEFB4AO15263 64 aa-0.24□□□□□ -2.45
PRKDC-209ENST00000540819 MT1BP07438 61 aa-0.26□□□□□ -2.45
PRKDC-209ENST00000540819 MT1HL1P0DM35 61 aa-0.28□□□□□ -2.45
PRKDC-209ENST00000540819 KRTAP19-2Q3LHN2 52 aa-0.29□□□□□ -2.46
PRKDC-209ENST00000540819 MT2AP02795 61 aa-0.3□□□□□ -2.46
PRKDC-209ENST00000540819 MT1FP04733 61 aa-0.3□□□□□ -2.46
PRKDC-209ENST00000540819 RPS29P62273 56 aaKnown RBP-0.31□□□□□ -2.46
PRKDC-209ENST00000540819 DEFB108AA8MXU0 73 aa-0.33□□□□□ -2.46
PRKDC-209ENST00000540819 APELAP0DMC3 54 aa-0.38□□□□□ -2.47
PRKDC-209ENST00000540819 A0A096LPF7 62 aa-0.39□□□□□ -2.47
PRKDC-209ENST00000540819 CD52P31358 61 aa-0.42□□□□□ -2.48
PRKDC-209ENST00000540819 LINC01556Q5JQF7 62 aa-0.42□□□□□ -2.48
PRKDC-209ENST00000540819 HTN3P15516 51 aa-0.46□□□□□ -2.48
PRKDC-209ENST00000540819 STATHP02808 62 aa-0.47□□□□□ -2.48
PRKDC-209ENST00000540819 DEFB108BQ8NET1 73 aa-0.5□□□□□ -2.49
PRKDC-209ENST00000540819 COX14Q96I36 57 aa-0.68□□□□□ -2.52
PRKDC-209ENST00000540819 Q9Y3F1 56 aa-0.76□□□□□ -2.53
Retrieved 78 of 20,778 RNA–protein pairs in 83.1 ms