RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 LINC01558Q9Y6Z2 57 aa4.6□□□□□ -1.67
RTN3-209ENST00000538995 KRTAP13-4Q3LI77 160 aa4.58□□□□□ -1.68
RTN3-209ENST00000538995 A8MU10 97 aa4.55□□□□□ -1.68
RTN3-209ENST00000538995 CAMK2N1Q7Z7J9 78 aa4.52□□□□□ -1.69
RTN3-209ENST00000538995 SPRR2DP22532 72 aa4.5□□□□□ -1.69
RTN3-209ENST00000538995 KRTAP2-2Q9BYT5 123 aa4.46□□□□□ -1.7
RTN3-209ENST00000538995 KRTAP2-1Q9BYU5 128 aa4.46□□□□□ -1.7
RTN3-209ENST00000538995 A0A1B0GU33 70 aa4.45□□□□□ -1.7
RTN3-209ENST00000538995 A0A0D9SG42 100 aa4.44□□□□□ -1.7
RTN3-209ENST00000538995 SPATA8Q6RVD6 105 aa4.42□□□□□ -1.7
RTN3-209ENST00000538995 PRAC1Q96KF2 57 aa4.41□□□□□ -1.7
RTN3-209ENST00000538995 SPINT4Q6UDR6 99 aa4.38□□□□□ -1.71
RTN3-209ENST00000538995 A0A1B0GU69 56 aa4.37□□□□□ -1.71
RTN3-209ENST00000538995 KRTAP12-1P59990 96 aa4.37□□□□□ -1.71
RTN3-209ENST00000538995 A0A0A0MQY5 61 aa4.36□□□□□ -1.71
RTN3-209ENST00000538995 ROMO1P60602 79 aa4.34□□□□□ -1.71
RTN3-209ENST00000538995 KRTAP19-7Q3SYF9 63 aa4.34□□□□□ -1.71
RTN3-209ENST00000538995 GPR98Q8WXG9 6306 aa4.33□□□□□ -1.72
RTN3-209ENST00000538995 MT1EP04732 61 aa4.32□□□□□ -1.72
RTN3-209ENST00000538995 KRTAP15-1Q3LI76 137 aa4.32□□□□□ -1.72
RTN3-209ENST00000538995 UQCR11O14957 56 aa4.29□□□□□ -1.72
RTN3-209ENST00000538995 KRTAP19-3Q7Z4W3 81 aa4.29□□□□□ -1.72
RTN3-209ENST00000538995 MIR22HGQ0VDD5 57 aa4.28□□□□□ -1.72
RTN3-209ENST00000538995 KRTAP25-1Q3LHN0 102 aa4.25□□□□□ -1.73
RTN3-209ENST00000538995 KRTAP19-5Q3LI72 72 aa4.23□□□□□ -1.73
RTN3-209ENST00000538995 DSTQ03001 7570 aaKnown RBP4.2□□□□□ -1.74
RTN3-209ENST00000538995 MT1GP13640 62 aa4.19□□□□□ -1.74
RTN3-209ENST00000538995 TNP1P09430 55 aa4.18□□□□□ -1.74
RTN3-209ENST00000538995 PP632Q6XCG6 107 aa4.17□□□□□ -1.74
RTN3-209ENST00000538995 C10orf95Q9H7T3 257 aa4.16□□□□□ -1.74
RTN3-209ENST00000538995 LCE3AQ5TA76 89 aa4.13□□□□□ -1.75
RTN3-209ENST00000538995 MT1LQ93083 61 aa4.12□□□□□ -1.75
RTN3-209ENST00000538995 K7ERS5 55 aa4.1□□□□□ -1.75
RTN3-209ENST00000538995 MT1MQ8N339 61 aa4.1□□□□□ -1.75
RTN3-209ENST00000538995 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.01□□□□□ -1.77
RTN3-209ENST00000538995 HMCN1Q96RW7 5635 aa4.01□□□□□ -1.77
RTN3-209ENST00000538995 KRTAP12-3P60328 96 aa4□□□□□ -1.77
RTN3-209ENST00000538995 LUZP6Q538Z0 58 aa3.99□□□□□ -1.77
RTN3-209ENST00000538995 NDUFAF8A1L188 74 aa3.97□□□□□ -1.77
RTN3-209ENST00000538995 AHNAK2Q8IVF2 5795 aa3.97□□□□□ -1.77
RTN3-209ENST00000538995 KRTAP4-3Q9BYR4 195 aa3.96□□□□□ -1.78
RTN3-209ENST00000538995 KRTAP5-4Q6L8H1 288 aa3.93□□□□□ -1.78
RTN3-209ENST00000538995 MT4P47944 62 aa3.9□□□□□ -1.79
RTN3-209ENST00000538995 KRTAP5-11Q6L8G4 156 aa3.88□□□□□ -1.79
RTN3-209ENST00000538995 KRTAP5-10Q6L8G5 202 aa3.88□□□□□ -1.79
RTN3-209ENST00000538995 KRTAP5-5Q701N2 237 aaPredicted RBP3.78□□□□□ -1.8
RTN3-209ENST00000538995 KRTAP5-7Q6L8G8 165 aa3.74□□□□□ -1.81
RTN3-209ENST00000538995 SPRR5A0A1B0GTR4 108 aa3.71□□□□□ -1.82
RTN3-209ENST00000538995 KRTAP20-2Q3LI61 65 aa3.7□□□□□ -1.82
RTN3-209ENST00000538995 KRTAP12-4P60329 112 aa3.68□□□□□ -1.82
RTN3-209ENST00000538995 LCE3CQ5T5A8 94 aa3.67□□□□□ -1.82
RTN3-209ENST00000538995 SYNE1Q8NF91 8797 aaKnown RBP3.59□□□□□ -1.83
RTN3-209ENST00000538995 LCE1EQ5T753 118 aa3.53□□□□□ -1.84
RTN3-209ENST00000538995 MT1AP04731 61 aa3.52□□□□□ -1.85
RTN3-209ENST00000538995 KRTAP5-1Q6L8H4 278 aa3.48□□□□□ -1.85
RTN3-209ENST00000538995 KRTAP6-1Q3LI64 71 aa3.47□□□□□ -1.85
RTN3-209ENST00000538995 INE1O15225 51 aa3.46□□□□□ -1.86
RTN3-209ENST00000538995 KRTAP5-2Q701N4 177 aa3.45□□□□□ -1.86
RTN3-209ENST00000538995 KRTAP9-6A8MVA2 160 aa3.44□□□□□ -1.86
RTN3-209ENST00000538995 MT3P25713 68 aa3.43□□□□□ -1.86
RTN3-209ENST00000538995 KRTAP4-4Q9BYR3 166 aa3.36□□□□□ -1.87
RTN3-209ENST00000538995 MUC5BQ9HC84 5762 aaPredicted RBP3.34□□□□□ -1.88
RTN3-209ENST00000538995 AHNAKQ09666 5890 aaKnown RBP3.33□□□□□ -1.88
RTN3-209ENST00000538995 MUC5ACP98088 5654 aa3.32□□□□□ -1.88
RTN3-209ENST00000538995 KRTAP6-2Q3LI66 62 aa3.32□□□□□ -1.88
RTN3-209ENST00000538995 KRTAP5-8O75690 187 aa3.25□□□□□ -1.89
RTN3-209ENST00000538995 OBSCNQ5VST9 7968 aa3.15□□□□□ -1.9
RTN3-209ENST00000538995 LCE1FQ5T754 118 aa3.1□□□□□ -1.91
RTN3-209ENST00000538995 LCE1CQ5T751 118 aa2.76□□□□□ -1.97
RTN3-209ENST00000538995 LCE1BQ5T7P3 118 aa2.76□□□□□ -1.97
RTN3-209ENST00000538995 LCE3DQ9BYE3 92 aa2.65□□□□□ -1.99
RTN3-209ENST00000538995 LCE3EQ5T5B0 92 aa2.63□□□□□ -1.99
RTN3-209ENST00000538995 KRTAP21-2Q3LI59 83 aa2.29□□□□□ -2.04
RTN3-209ENST00000538995 PHGR1C9JFL3 82 aa2.2□□□□□ -2.06
RTN3-209ENST00000538995 PRM1P04553 51 aa2.05□□□□□ -2.08
RTN3-209ENST00000538995 MUC19Q7Z5P9 8384 aa2.04□□□□□ -2.08
RTN3-209ENST00000538995 KRTAP21-1Q3LI58 79 aa1.66□□□□□ -2.14
RTN3-209ENST00000538995 MUC16Q8WXI7 14507 aa1.46□□□□□ -2.18
Retrieved 78 of 20,778 RNA–protein pairs in 79.8 ms