RNA–Protein interactions for RNA: ENST00000536548.5

CPSF7-216, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 4

Gene CPSF7, Length 598 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-216ENST00000536548 KRTAP4-8A0A0G2JLE6 195 aa3.3□□□□□ -1.88
CPSF7-216ENST00000536548 KRTAP5-9P26371 169 aa3.27□□□□□ -1.89
CPSF7-216ENST00000536548 KRTAP19-4Q3LI73 84 aa3.27□□□□□ -1.89
CPSF7-216ENST00000536548 KRTAP2-2Q9BYT5 123 aa3.25□□□□□ -1.89
CPSF7-216ENST00000536548 KRTAP2-1Q9BYU5 128 aa3.25□□□□□ -1.89
CPSF7-216ENST00000536548 PRO2289Q9P1D8 64 aa3.25□□□□□ -1.89
CPSF7-216ENST00000536548 INE1O15225 51 aa3.24□□□□□ -1.89
CPSF7-216ENST00000536548 SPRR2GQ9BYE4 73 aa3.22□□□□□ -1.89
CPSF7-216ENST00000536548 LCE1DQ5T752 114 aa3.18□□□□□ -1.9
CPSF7-216ENST00000536548 LCE3AQ5TA76 89 aa3.17□□□□□ -1.9
CPSF7-216ENST00000536548 KRTAP4-7Q9BYR0 210 aa3.17□□□□□ -1.9
CPSF7-216ENST00000536548 SPRR2EP22531 72 aa3.15□□□□□ -1.91
CPSF7-216ENST00000536548 SPRR2BP35325 72 aa3.15□□□□□ -1.91
CPSF7-216ENST00000536548 SPRR2AP35326 72 aa3.15□□□□□ -1.91
CPSF7-216ENST00000536548 KRTAP8-1Q8IUC2 63 aa3.15□□□□□ -1.91
CPSF7-216ENST00000536548 LCE4AQ5TA78 99 aa3.14□□□□□ -1.91
CPSF7-216ENST00000536548 DSTQ03001 7570 aaKnown RBP3.13□□□□□ -1.91
CPSF7-216ENST00000536548 KRTAP4-9Q9BYQ8 210 aa3.12□□□□□ -1.91
CPSF7-216ENST00000536548 SPRR2FQ96RM1 72 aa3.09□□□□□ -1.91
CPSF7-216ENST00000536548 KRTAP19-8Q3LI54 63 aa3.07□□□□□ -1.92
CPSF7-216ENST00000536548 KRTAP4-2Q9BYR5 136 aa3.07□□□□□ -1.92
CPSF7-216ENST00000536548 SPRR2DP22532 72 aa3.05□□□□□ -1.92
CPSF7-216ENST00000536548 LCE1AQ5T7P2 110 aa3.05□□□□□ -1.92
CPSF7-216ENST00000536548 KRTAP12-3P60328 96 aa3.04□□□□□ -1.92
CPSF7-216ENST00000536548 KRTAP10-5P60370 271 aa3.03□□□□□ -1.92
CPSF7-216ENST00000536548 KRTAP10-12P60413 245 aa3.03□□□□□ -1.92
CPSF7-216ENST00000536548 MT1BP07438 61 aa3.02□□□□□ -1.93
CPSF7-216ENST00000536548 KRTAP4-11Q9BYQ6 195 aa3□□□□□ -1.93
CPSF7-216ENST00000536548 MT1XP80297 61 aa2.97□□□□□ -1.93
CPSF7-216ENST00000536548 LCE5AQ5TCM9 118 aa2.92□□□□□ -1.94
CPSF7-216ENST00000536548 HMCN1Q96RW7 5635 aa2.89□□□□□ -1.95
CPSF7-216ENST00000536548 AHNAK2Q8IVF2 5795 aa2.89□□□□□ -1.95
CPSF7-216ENST00000536548 KRTAP10-7P60409 375 aaPredicted RBP2.87□□□□□ -1.95
CPSF7-216ENST00000536548 LCE3CQ5T5A8 94 aa2.87□□□□□ -1.95
CPSF7-216ENST00000536548 KRTAP5-10Q6L8G5 202 aa2.86□□□□□ -1.95
CPSF7-216ENST00000536548 KRTAP19-5Q3LI72 72 aa2.82□□□□□ -1.96
CPSF7-216ENST00000536548 KRTAP5-7Q6L8G8 165 aa2.79□□□□□ -1.96
CPSF7-216ENST00000536548 MT4P47944 62 aa2.75□□□□□ -1.97
CPSF7-216ENST00000536548 KRTAP5-3Q6L8H2 238 aa2.74□□□□□ -1.97
CPSF7-216ENST00000536548 KRTAP9-6A8MVA2 160 aa2.68□□□□□ -1.98
CPSF7-216ENST00000536548 KRTAP19-7Q3SYF9 63 aa2.64□□□□□ -1.99
CPSF7-216ENST00000536548 MT1LQ93083 61 aa2.6□□□□□ -1.99
CPSF7-216ENST00000536548 MT1EP04732 61 aa2.58□□□□□ -2
CPSF7-216ENST00000536548 AHNAKQ09666 5890 aaKnown RBP2.55□□□□□ -2
CPSF7-216ENST00000536548 KRTAP5-4Q6L8H1 288 aa2.51□□□□□ -2.01
CPSF7-216ENST00000536548 KRTAP19-3Q7Z4W3 81 aa2.49□□□□□ -2.01
CPSF7-216ENST00000536548 MUC5ACP98088 5654 aa2.49□□□□□ -2.01
CPSF7-216ENST00000536548 MUC5BQ9HC84 5762 aaPredicted RBP2.44□□□□□ -2.02
CPSF7-216ENST00000536548 KRTAP12-4P60329 112 aa2.44□□□□□ -2.02
CPSF7-216ENST00000536548 MT1GP13640 62 aa2.42□□□□□ -2.02
CPSF7-216ENST00000536548 KRTAP20-2Q3LI61 65 aa2.42□□□□□ -2.02
CPSF7-216ENST00000536548 MT1MQ8N339 61 aa2.4□□□□□ -2.03
CPSF7-216ENST00000536548 KRTAP4-3Q9BYR4 195 aa2.38□□□□□ -2.03
CPSF7-216ENST00000536548 MT1AP04731 61 aa2.35□□□□□ -2.03
CPSF7-216ENST00000536548 OBSCNQ5VST9 7968 aa2.32□□□□□ -2.04
CPSF7-216ENST00000536548 KRTAP5-8O75690 187 aa2.32□□□□□ -2.04
CPSF7-216ENST00000536548 SYNE1Q8NF91 8797 aaKnown RBP2.31□□□□□ -2.04
CPSF7-216ENST00000536548 MT3P25713 68 aa2.28□□□□□ -2.04
CPSF7-216ENST00000536548 LCE3EQ5T5B0 92 aa2.25□□□□□ -2.05
CPSF7-216ENST00000536548 LCE3DQ9BYE3 92 aa2.25□□□□□ -2.05
CPSF7-216ENST00000536548 KRTAP5-5Q701N2 237 aaPredicted RBP2.2□□□□□ -2.06
CPSF7-216ENST00000536548 PRM1P04553 51 aa2.18□□□□□ -2.06
CPSF7-216ENST00000536548 KRTAP6-1Q3LI64 71 aa2.18□□□□□ -2.06
CPSF7-216ENST00000536548 KRTAP5-2Q701N4 177 aa2.17□□□□□ -2.06
CPSF7-216ENST00000536548 KRTAP6-2Q3LI66 62 aa2.06□□□□□ -2.08
CPSF7-216ENST00000536548 KRTAP5-11Q6L8G4 156 aa2.06□□□□□ -2.08
CPSF7-216ENST00000536548 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.06□□□□□ -2.08
CPSF7-216ENST00000536548 LCE1FQ5T754 118 aa2.01□□□□□ -2.09
CPSF7-216ENST00000536548 KRTAP5-1Q6L8H4 278 aa2□□□□□ -2.09
CPSF7-216ENST00000536548 LCE1EQ5T753 118 aa1.88□□□□□ -2.11
CPSF7-216ENST00000536548 KRTAP4-4Q9BYR3 166 aa1.74□□□□□ -2.13
CPSF7-216ENST00000536548 PHGR1C9JFL3 82 aa1.7□□□□□ -2.14
CPSF7-216ENST00000536548 LCE1BQ5T7P3 118 aa1.7□□□□□ -2.14
CPSF7-216ENST00000536548 LCE1CQ5T751 118 aa1.58□□□□□ -2.16
CPSF7-216ENST00000536548 MUC19Q7Z5P9 8384 aa1.45□□□□□ -2.18
CPSF7-216ENST00000536548 KRTAP21-1Q3LI58 79 aa1.42□□□□□ -2.18
CPSF7-216ENST00000536548 KRTAP21-2Q3LI59 83 aa1.4□□□□□ -2.19
CPSF7-216ENST00000536548 MUC16Q8WXI7 14507 aa0.91□□□□□ -2.26
Retrieved 78 of 20,778 RNA–protein pairs in 43.3 ms