RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 CAMK2N1Q7Z7J9 78 aa2.7□□□□□ -1.98
CD44-237ENST00000534082 KRTAP4-4Q9BYR3 166 aa2.7□□□□□ -1.98
CD44-237ENST00000534082 MT1XP80297 61 aa2.69□□□□□ -1.98
CD44-237ENST00000534082 LINC00472Q9H8W2 130 aa2.69□□□□□ -1.98
CD44-237ENST00000534082 KRTAP5-7Q6L8G8 165 aa2.68□□□□□ -1.98
CD44-237ENST00000534082 KRTAP5-4Q6L8H1 288 aa2.68□□□□□ -1.98
CD44-237ENST00000534082 SPANXA2-OT1Q8N9U9 137 aa2.68□□□□□ -1.98
CD44-237ENST00000534082 LINC00208Q96KT6 92 aa2.68□□□□□ -1.98
CD44-237ENST00000534082 H0YGX0 51 aa2.66□□□□□ -1.98
CD44-237ENST00000534082 PDE6GP18545 87 aa2.66□□□□□ -1.98
CD44-237ENST00000534082 H3BPC8 53 aa2.65□□□□□ -1.99
CD44-237ENST00000534082 LOC110117498A0A087WWA1 95 aa2.64□□□□□ -1.99
CD44-237ENST00000534082 SPRR5A0A1B0GTR4 108 aa2.64□□□□□ -1.99
CD44-237ENST00000534082 KRTAP25-1Q3LHN0 102 aa2.64□□□□□ -1.99
CD44-237ENST00000534082 MT4P47944 62 aa2.63□□□□□ -1.99
CD44-237ENST00000534082 NDUFAF8A1L188 74 aa2.62□□□□□ -1.99
CD44-237ENST00000534082 H0Y9P7 68 aa2.62□□□□□ -1.99
CD44-237ENST00000534082 CRIPTQ9P021 101 aa2.62□□□□□ -1.99
CD44-237ENST00000534082 DMAC1Q96GE9 116 aa2.61□□□□□ -1.99
CD44-237ENST00000534082 S4R3F8 94 aa2.61□□□□□ -1.99
CD44-237ENST00000534082 SPATA8Q6RVD6 105 aa2.6□□□□□ -1.99
CD44-237ENST00000534082 AHNAKQ09666 5890 aaKnown RBP2.58□□□□□ -2
CD44-237ENST00000534082 H3BQ85 93 aa2.58□□□□□ -2
CD44-237ENST00000534082 UQCR11O14957 56 aa2.58□□□□□ -2
CD44-237ENST00000534082 Q5W150 140 aa2.57□□□□□ -2
CD44-237ENST00000534082 COA5Q86WW8 74 aa2.57□□□□□ -2
CD44-237ENST00000534082 PLAC4Q8WY50 150 aa2.54□□□□□ -2
CD44-237ENST00000534082 A0A1B0GU33 70 aa2.52□□□□□ -2.01
CD44-237ENST00000534082 K7EQZ3 153 aa2.52□□□□□ -2.01
CD44-237ENST00000534082 MRPL34Q9BQ48 92 aaKnown RBP2.52□□□□□ -2.01
CD44-237ENST00000534082 OBSCNQ5VST9 7968 aa2.51□□□□□ -2.01
CD44-237ENST00000534082 MMP24-AS1A0A0U1RRL7 71 aa2.49□□□□□ -2.01
CD44-237ENST00000534082 MUC5ACP98088 5654 aa2.49□□□□□ -2.01
CD44-237ENST00000534082 LCE3EQ5T5B0 92 aa2.48□□□□□ -2.01
CD44-237ENST00000534082 SPINT4Q6UDR6 99 aa2.48□□□□□ -2.01
CD44-237ENST00000534082 KRTAP19-3Q7Z4W3 81 aa2.47□□□□□ -2.01
CD44-237ENST00000534082 Q8N9L7 120 aa2.47□□□□□ -2.01
CD44-237ENST00000534082 MUC5BQ9HC84 5762 aaPredicted RBP2.46□□□□□ -2.02
CD44-237ENST00000534082 A0A1B0GU69 56 aa2.45□□□□□ -2.02
CD44-237ENST00000534082 H0YAA0 97 aa2.42□□□□□ -2.02
CD44-237ENST00000534082 LCE3AQ5TA76 89 aa2.42□□□□□ -2.02
CD44-237ENST00000534082 MT1EP04732 61 aa2.41□□□□□ -2.02
CD44-237ENST00000534082 KRTAP19-7Q3SYF9 63 aa2.41□□□□□ -2.02
CD44-237ENST00000534082 KRTAP4-3Q9BYR4 195 aa2.41□□□□□ -2.02
CD44-237ENST00000534082 R4GN34 69 aa2.37□□□□□ -2.03
CD44-237ENST00000534082 ACYP2P14621 99 aa2.36□□□□□ -2.03
CD44-237ENST00000534082 KRTAP20-2Q3LI61 65 aa2.36□□□□□ -2.03
CD44-237ENST00000534082 MT1GP13640 62 aa2.35□□□□□ -2.03
CD44-237ENST00000534082 M0QZ58 72 aa2.34□□□□□ -2.03
CD44-237ENST00000534082 PP632Q6XCG6 107 aa2.34□□□□□ -2.03
CD44-237ENST00000534082 MT1MQ8N339 61 aa2.33□□□□□ -2.04
CD44-237ENST00000534082 TP53AIP1Q9HCN2 124 aa2.31□□□□□ -2.04
CD44-237ENST00000534082 INE1O15225 51 aa2.24□□□□□ -2.05
CD44-237ENST00000534082 KRTAP19-5Q3LI72 72 aa2.23□□□□□ -2.05
CD44-237ENST00000534082 KRTAP5-2Q701N4 177 aa2.23□□□□□ -2.05
CD44-237ENST00000534082 SYNE1Q8NF91 8797 aaKnown RBP2.23□□□□□ -2.05
CD44-237ENST00000534082 KRTAP5-8O75690 187 aa2.22□□□□□ -2.05
CD44-237ENST00000534082 MT1LQ93083 61 aa2.22□□□□□ -2.05
CD44-237ENST00000534082 KRTAP12-4P60329 112 aa2.21□□□□□ -2.06
CD44-237ENST00000534082 KRTAP5-5Q701N2 237 aaPredicted RBP2.17□□□□□ -2.06
CD44-237ENST00000534082 A0A0D9SG42 100 aa2.13□□□□□ -2.07
CD44-237ENST00000534082 C10orf95Q9H7T3 257 aa2.12□□□□□ -2.07
CD44-237ENST00000534082 LCE1CQ5T751 118 aa2.07□□□□□ -2.08
CD44-237ENST00000534082 LCE1BQ5T7P3 118 aa2.07□□□□□ -2.08
CD44-237ENST00000534082 KRTAP13-4Q3LI77 160 aa1.97□□□□□ -2.09
CD44-237ENST00000534082 LCE3DQ9BYE3 92 aa1.97□□□□□ -2.09
CD44-237ENST00000534082 KRTAP6-2Q3LI66 62 aa1.91□□□□□ -2.1
CD44-237ENST00000534082 KRTAP6-1Q3LI64 71 aa1.9□□□□□ -2.11
CD44-237ENST00000534082 KRTAP12-3P60328 96 aa1.89□□□□□ -2.11
CD44-237ENST00000534082 MT1AP04731 61 aa1.88□□□□□ -2.11
CD44-237ENST00000534082 KRTAP12-1P59990 96 aa1.84□□□□□ -2.11
CD44-237ENST00000534082 TNP1P09430 55 aa1.83□□□□□ -2.12
CD44-237ENST00000534082 MUC19Q7Z5P9 8384 aa1.72□□□□□ -2.13
CD44-237ENST00000534082 PHGR1C9JFL3 82 aa1.62□□□□□ -2.15
CD44-237ENST00000534082 KRTAP21-2Q3LI59 83 aa1.49□□□□□ -2.17
CD44-237ENST00000534082 PRM1P04553 51 aa1.23□□□□□ -2.21
CD44-237ENST00000534082 KRTAP21-1Q3LI58 79 aa1.23□□□□□ -2.21
CD44-237ENST00000534082 MUC16Q8WXI7 14507 aa0.92□□□□□ -2.26
Retrieved 78 of 20,778 RNA–protein pairs in 66.5 ms