RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 SPRR2EP22531 72 aa3.52□□□□□ -1.85
NEDD8-207ENST00000533242 SPRR2BP35325 72 aa3.52□□□□□ -1.85
NEDD8-207ENST00000533242 SPRR2AP35326 72 aa3.52□□□□□ -1.85
NEDD8-207ENST00000533242 KRTAP2-2Q9BYT5 123 aa3.52□□□□□ -1.85
NEDD8-207ENST00000533242 KRTAP2-1Q9BYU5 128 aa3.52□□□□□ -1.85
NEDD8-207ENST00000533242 SPRR2FQ96RM1 72 aa3.5□□□□□ -1.85
NEDD8-207ENST00000533242 MDN1Q9NU22 5596 aa3.48□□□□□ -1.85
NEDD8-207ENST00000533242 CAMK2N1Q7Z7J9 78 aa3.48□□□□□ -1.85
NEDD8-207ENST00000533242 LCE1DQ5T752 114 aa3.47□□□□□ -1.85
NEDD8-207ENST00000533242 LCE1AQ5T7P2 110 aa3.44□□□□□ -1.86
NEDD8-207ENST00000533242 NDUFAF8A1L188 74 aa3.42□□□□□ -1.86
NEDD8-207ENST00000533242 SPRR2DP22532 72 aa3.41□□□□□ -1.86
NEDD8-207ENST00000533242 KRTAP8-1Q8IUC2 63 aa3.41□□□□□ -1.86
NEDD8-207ENST00000533242 KRTAP4-9Q9BYQ8 210 aa3.4□□□□□ -1.87
NEDD8-207ENST00000533242 PRO2289Q9P1D8 64 aa3.39□□□□□ -1.87
NEDD8-207ENST00000533242 KRTAP4-2Q9BYR5 136 aa3.39□□□□□ -1.87
NEDD8-207ENST00000533242 MT1XP80297 61 aa3.36□□□□□ -1.87
NEDD8-207ENST00000533242 PLAC4Q8WY50 150 aa3.35□□□□□ -1.87
NEDD8-207ENST00000533242 TNP1P09430 55 aa3.33□□□□□ -1.88
NEDD8-207ENST00000533242 PP632Q6XCG6 107 aa3.32□□□□□ -1.88
NEDD8-207ENST00000533242 GPR98Q8WXG9 6306 aa3.27□□□□□ -1.89
NEDD8-207ENST00000533242 LCE5AQ5TCM9 118 aa3.25□□□□□ -1.89
NEDD8-207ENST00000533242 KRTAP5-3Q6L8H2 238 aa3.24□□□□□ -1.89
NEDD8-207ENST00000533242 LCE3AQ5TA76 89 aa3.24□□□□□ -1.89
NEDD8-207ENST00000533242 KRTAP4-11Q9BYQ6 195 aa3.23□□□□□ -1.89
NEDD8-207ENST00000533242 KRTAP10-12P60413 245 aa3.2□□□□□ -1.9
NEDD8-207ENST00000533242 KRTAP10-7P60409 375 aaPredicted RBP3.19□□□□□ -1.9
NEDD8-207ENST00000533242 SPRR5A0A1B0GTR4 108 aa3.16□□□□□ -1.9
NEDD8-207ENST00000533242 LUZP6Q538Z0 58 aa3.15□□□□□ -1.91
NEDD8-207ENST00000533242 KRTAP12-3P60328 96 aa3.05□□□□□ -1.92
NEDD8-207ENST00000533242 DSTQ03001 7570 aaKnown RBP3.03□□□□□ -1.92
NEDD8-207ENST00000533242 KRTAP19-3Q7Z4W3 81 aa3.03□□□□□ -1.92
NEDD8-207ENST00000533242 KRTAP19-7Q3SYF9 63 aa3.01□□□□□ -1.93
NEDD8-207ENST00000533242 MT1EP04732 61 aa3.01□□□□□ -1.93
NEDD8-207ENST00000533242 MT4P47944 62 aa2.98□□□□□ -1.93
NEDD8-207ENST00000533242 KRTAP19-5Q3LI72 72 aa2.98□□□□□ -1.93
NEDD8-207ENST00000533242 KRTAP5-10Q6L8G5 202 aa2.98□□□□□ -1.93
NEDD8-207ENST00000533242 AHNAK2Q8IVF2 5795 aa2.94□□□□□ -1.94
NEDD8-207ENST00000533242 HMCN1Q96RW7 5635 aa2.94□□□□□ -1.94
NEDD8-207ENST00000533242 MT1GP13640 62 aa2.93□□□□□ -1.94
NEDD8-207ENST00000533242 KRTAP5-7Q6L8G8 165 aa2.92□□□□□ -1.94
NEDD8-207ENST00000533242 KRTAP5-4Q6L8H1 288 aa2.91□□□□□ -1.94
NEDD8-207ENST00000533242 MT1MQ8N339 61 aa2.88□□□□□ -1.95
NEDD8-207ENST00000533242 LCE3CQ5T5A8 94 aa2.87□□□□□ -1.95
NEDD8-207ENST00000533242 KRTAP9-6A8MVA2 160 aa2.85□□□□□ -1.95
NEDD8-207ENST00000533242 MT1LQ93083 61 aa2.82□□□□□ -1.96
NEDD8-207ENST00000533242 KRTAP4-3Q9BYR4 195 aa2.8□□□□□ -1.96
NEDD8-207ENST00000533242 KRTAP20-2Q3LI61 65 aa2.75□□□□□ -1.97
NEDD8-207ENST00000533242 LCE1FQ5T754 118 aa2.72□□□□□ -1.97
NEDD8-207ENST00000533242 KRTAP5-5Q701N2 237 aaPredicted RBP2.67□□□□□ -1.98
NEDD8-207ENST00000533242 KRTAP12-4P60329 112 aa2.66□□□□□ -1.98
NEDD8-207ENST00000533242 INE1O15225 51 aa2.65□□□□□ -1.98
NEDD8-207ENST00000533242 AHNAKQ09666 5890 aaKnown RBP2.53□□□□□ -2.01
NEDD8-207ENST00000533242 KRTAP5-2Q701N4 177 aa2.51□□□□□ -2.01
NEDD8-207ENST00000533242 KRTAP5-8O75690 187 aa2.5□□□□□ -2.01
NEDD8-207ENST00000533242 SYNE1Q8NF91 8797 aaKnown RBP2.49□□□□□ -2.01
NEDD8-207ENST00000533242 MT3P25713 68 aa2.49□□□□□ -2.01
NEDD8-207ENST00000533242 MUC5ACP98088 5654 aa2.47□□□□□ -2.01
NEDD8-207ENST00000533242 MUC5BQ9HC84 5762 aaPredicted RBP2.41□□□□□ -2.02
NEDD8-207ENST00000533242 MT1AP04731 61 aa2.41□□□□□ -2.02
NEDD8-207ENST00000533242 LCE3EQ5T5B0 92 aa2.4□□□□□ -2.02
NEDD8-207ENST00000533242 KRTAP6-1Q3LI64 71 aa2.4□□□□□ -2.03
NEDD8-207ENST00000533242 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.37□□□□□ -2.03
NEDD8-207ENST00000533242 KRTAP6-2Q3LI66 62 aa2.34□□□□□ -2.04
NEDD8-207ENST00000533242 KRTAP5-1Q6L8H4 278 aa2.28□□□□□ -2.04
NEDD8-207ENST00000533242 OBSCNQ5VST9 7968 aa2.23□□□□□ -2.05
NEDD8-207ENST00000533242 LCE3DQ9BYE3 92 aa2.19□□□□□ -2.06
NEDD8-207ENST00000533242 KRTAP5-11Q6L8G4 156 aa2.16□□□□□ -2.06
NEDD8-207ENST00000533242 LCE1EQ5T753 118 aa2.11□□□□□ -2.07
NEDD8-207ENST00000533242 PRM1P04553 51 aa2.06□□□□□ -2.08
NEDD8-207ENST00000533242 LCE1BQ5T7P3 118 aa1.98□□□□□ -2.09
NEDD8-207ENST00000533242 KRTAP4-4Q9BYR3 166 aa1.95□□□□□ -2.1
NEDD8-207ENST00000533242 LCE1CQ5T751 118 aa1.95□□□□□ -2.1
NEDD8-207ENST00000533242 PHGR1C9JFL3 82 aa1.74□□□□□ -2.13
NEDD8-207ENST00000533242 KRTAP21-2Q3LI59 83 aa1.58□□□□□ -2.16
NEDD8-207ENST00000533242 MUC19Q7Z5P9 8384 aa1.37□□□□□ -2.19
NEDD8-207ENST00000533242 KRTAP21-1Q3LI58 79 aa1.34□□□□□ -2.19
NEDD8-207ENST00000533242 MUC16Q8WXI7 14507 aa1.07□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 11.5 ms