RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 COX7CP15954 63 aa1.32□□□□□ -2.2
MCF2-208ENST00000519895 KRTAP5-2Q701N4 177 aa1.31□□□□□ -2.2
MCF2-208ENST00000519895 SERP1Q9Y6X1 66 aa1.31□□□□□ -2.2
MCF2-208ENST00000519895 MT1FP04733 61 aa1.3□□□□□ -2.2
MCF2-208ENST00000519895 P0C880 135 aa1.3□□□□□ -2.2
MCF2-208ENST00000519895 MT3P25713 68 aa1.3□□□□□ -2.2
MCF2-208ENST00000519895 R4GN34 69 aa1.3□□□□□ -2.2
MCF2-208ENST00000519895 MT-ATP8P03928 68 aa1.3□□□□□ -2.2
MCF2-208ENST00000519895 Q5VV11 94 aa1.3□□□□□ -2.2
MCF2-208ENST00000519895 LINC00208Q96KT6 92 aa1.3□□□□□ -2.2
MCF2-208ENST00000519895 A0A087WVE0 104 aa1.29□□□□□ -2.2
MCF2-208ENST00000519895 SPRR2FQ96RM1 72 aa1.29□□□□□ -2.2
MCF2-208ENST00000519895 M0QZ58 72 aa1.28□□□□□ -2.2
MCF2-208ENST00000519895 SPINT4Q6UDR6 99 aa1.28□□□□□ -2.2
MCF2-208ENST00000519895 KRTAP10-10P60014 251 aa1.27□□□□□ -2.21
MCF2-208ENST00000519895 Q1T7F1 81 aa1.27□□□□□ -2.21
MCF2-208ENST00000519895 KRTAP12-2P59991 146 aa1.27□□□□□ -2.21
MCF2-208ENST00000519895 PRO2289Q9P1D8 64 aa1.27□□□□□ -2.21
MCF2-208ENST00000519895 KRTAP10-5P60370 271 aa1.26□□□□□ -2.21
MCF2-208ENST00000519895 LCE1FQ5T754 118 aa1.26□□□□□ -2.21
MCF2-208ENST00000519895 MT1BP07438 61 aa1.25□□□□□ -2.21
MCF2-208ENST00000519895 MIR22HGQ0VDD5 57 aa1.25□□□□□ -2.21
MCF2-208ENST00000519895 H7BZZ5 65 aa1.25□□□□□ -2.21
MCF2-208ENST00000519895 KRTAP4-3Q9BYR4 195 aa1.25□□□□□ -2.21
MCF2-208ENST00000519895 DSTQ03001 7570 aaKnown RBP1.23□□□□□ -2.21
MCF2-208ENST00000519895 COA5Q86WW8 74 aa1.22□□□□□ -2.21
MCF2-208ENST00000519895 CYSTM1Q9H1C7 97 aa1.22□□□□□ -2.21
MCF2-208ENST00000519895 CHKB-CPT1BH3BT56 60 aa1.22□□□□□ -2.21
MCF2-208ENST00000519895 LINC01558Q9Y6Z2 57 aa1.22□□□□□ -2.21
MCF2-208ENST00000519895 PRR15LQ9BU68 103 aa1.21□□□□□ -2.22
MCF2-208ENST00000519895 A8MU10 97 aa1.21□□□□□ -2.22
MCF2-208ENST00000519895 KRTAP5-8O75690 187 aa1.21□□□□□ -2.22
MCF2-208ENST00000519895 MT4P47944 62 aa1.2□□□□□ -2.22
MCF2-208ENST00000519895 PLAC4Q8WY50 150 aa1.2□□□□□ -2.22
MCF2-208ENST00000519895 SNURFQ9Y675 71 aa1.19□□□□□ -2.22
MCF2-208ENST00000519895 KRTAP10-12P60413 245 aa1.18□□□□□ -2.22
MCF2-208ENST00000519895 MT1XP80297 61 aa1.18□□□□□ -2.22
MCF2-208ENST00000519895 CDC42SE1Q9NRR8 79 aa1.17□□□□□ -2.22
MCF2-208ENST00000519895 C10orf95Q9H7T3 257 aa1.16□□□□□ -2.22
MCF2-208ENST00000519895 LCE3CQ5T5A8 94 aa1.16□□□□□ -2.22
MCF2-208ENST00000519895 A0A1B0GU69 56 aa1.15□□□□□ -2.23
MCF2-208ENST00000519895 SPATA8Q6RVD6 105 aa1.14□□□□□ -2.23
MCF2-208ENST00000519895 UQCR11O14957 56 aa1.14□□□□□ -2.23
MCF2-208ENST00000519895 KRTAP9-6A8MVA2 160 aa1.13□□□□□ -2.23
MCF2-208ENST00000519895 KRTAP12-1P59990 96 aa1.13□□□□□ -2.23
MCF2-208ENST00000519895 INE1O15225 51 aa1.12□□□□□ -2.23
MCF2-208ENST00000519895 KRTAP13-4Q3LI77 160 aa1.12□□□□□ -2.23
MCF2-208ENST00000519895 KRTAP8-1Q8IUC2 63 aa1.12□□□□□ -2.23
MCF2-208ENST00000519895 KRTAP20-2Q3LI61 65 aa1.11□□□□□ -2.23
MCF2-208ENST00000519895 TNP1P09430 55 aa1.1□□□□□ -2.23
MCF2-208ENST00000519895 PP632Q6XCG6 107 aa1.09□□□□□ -2.24
MCF2-208ENST00000519895 LCE3EQ5T5B0 92 aa1.07□□□□□ -2.24
MCF2-208ENST00000519895 MT1GP13640 62 aa1.06□□□□□ -2.24
MCF2-208ENST00000519895 MT1EP04732 61 aa1.06□□□□□ -2.24
MCF2-208ENST00000519895 KRTAP19-7Q3SYF9 63 aa1.05□□□□□ -2.24
MCF2-208ENST00000519895 KRTAP19-3Q7Z4W3 81 aa1.05□□□□□ -2.24
MCF2-208ENST00000519895 KRTAP5-5Q701N2 237 aaPredicted RBP1.03□□□□□ -2.24
MCF2-208ENST00000519895 A0A0D9SG42 100 aa1.02□□□□□ -2.25
MCF2-208ENST00000519895 MT1LQ93083 61 aa1.02□□□□□ -2.25
MCF2-208ENST00000519895 KRTAP19-5Q3LI72 72 aa1□□□□□ -2.25
MCF2-208ENST00000519895 KRTAP12-3P60328 96 aa1□□□□□ -2.25
MCF2-208ENST00000519895 LCE3AQ5TA76 89 aa1□□□□□ -2.25
MCF2-208ENST00000519895 MT1MQ8N339 61 aa0.99□□□□□ -2.25
MCF2-208ENST00000519895 PHGR1C9JFL3 82 aa0.98□□□□□ -2.25
MCF2-208ENST00000519895 LCE3DQ9BYE3 92 aa0.97□□□□□ -2.25
MCF2-208ENST00000519895 LCE1CQ5T751 118 aa0.94□□□□□ -2.26
MCF2-208ENST00000519895 LCE1BQ5T7P3 118 aa0.94□□□□□ -2.26
MCF2-208ENST00000519895 KRTAP12-4P60329 112 aa0.94□□□□□ -2.26
MCF2-208ENST00000519895 MUC19Q7Z5P9 8384 aa0.93□□□□□ -2.26
MCF2-208ENST00000519895 MT1AP04731 61 aa0.91□□□□□ -2.26
MCF2-208ENST00000519895 KRTAP21-1Q3LI58 79 aa0.87□□□□□ -2.27
MCF2-208ENST00000519895 SYNE1Q8NF91 8797 aaKnown RBP0.84□□□□□ -2.28
MCF2-208ENST00000519895 KRTAP6-1Q3LI64 71 aa0.81□□□□□ -2.28
MCF2-208ENST00000519895 KRTAP6-2Q3LI66 62 aa0.75□□□□□ -2.29
MCF2-208ENST00000519895 KRTAP21-2Q3LI59 83 aa0.69□□□□□ -2.3
MCF2-208ENST00000519895 MUC16Q8WXI7 14507 aa0.53□□□□□ -2.32
MCF2-208ENST00000519895 PRM1P04553 51 aa0.46□□□□□ -2.34
Retrieved 77 of 20,778 RNA–protein pairs in 62.9 ms