RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 KRTAP2-3P0C7H8 128 aa8.18□□□□□ -1.1
USP53-208ENST00000514305 KRTAP2-4Q9BYR9 128 aa8.18□□□□□ -1.1
USP53-208ENST00000514305 SPRR2EP22531 72 aa8.17□□□□□ -1.1
USP53-208ENST00000514305 SPRR2BP35325 72 aa8.17□□□□□ -1.1
USP53-208ENST00000514305 SPRR2AP35326 72 aa8.17□□□□□ -1.1
USP53-208ENST00000514305 KRTAP2-2Q9BYT5 123 aa8.17□□□□□ -1.1
USP53-208ENST00000514305 KRTAP8-1Q8IUC2 63 aa8.14□□□□□ -1.11
USP53-208ENST00000514305 KRTAP10-7P60409 375 aaPredicted RBP8.05□□□□□ -1.12
USP53-208ENST00000514305 CDC42SE1Q9NRR8 79 aa8.02□□□□□ -1.13
USP53-208ENST00000514305 KRTAP10-12P60413 245 aa7.98□□□□□ -1.13
USP53-208ENST00000514305 KRTAP5-11Q6L8G4 156 aa7.93□□□□□ -1.14
USP53-208ENST00000514305 TNP1P09430 55 aa7.92□□□□□ -1.14
USP53-208ENST00000514305 KRTAP2-1Q9BYU5 128 aa7.91□□□□□ -1.14
USP53-208ENST00000514305 SPRR2DP22532 72 aa7.9□□□□□ -1.14
USP53-208ENST00000514305 C10orf95Q9H7T3 257 aa7.89□□□□□ -1.15
USP53-208ENST00000514305 KRTAP5-6Q6L8G9 129 aaPredicted RBP7.88□□□□□ -1.15
USP53-208ENST00000514305 KRTAP25-1Q3LHN0 102 aa7.75□□□□□ -1.17
USP53-208ENST00000514305 BRK1Q8WUW1 75 aa7.72□□□□□ -1.17
USP53-208ENST00000514305 ROMO1P60602 79 aa7.66□□□□□ -1.18
USP53-208ENST00000514305 LCE1EQ5T753 118 aa7.62□□□□□ -1.19
USP53-208ENST00000514305 LCE3AQ5TA76 89 aa7.55□□□□□ -1.2
USP53-208ENST00000514305 KRTAP19-7Q3SYF9 63 aa7.45□□□□□ -1.22
USP53-208ENST00000514305 KRTAP19-5Q3LI72 72 aa7.44□□□□□ -1.22
USP53-208ENST00000514305 MT3P25713 68 aa7.41□□□□□ -1.22
USP53-208ENST00000514305 MT1EP04732 61 aa7.39□□□□□ -1.23
USP53-208ENST00000514305 PP632Q6XCG6 107 aa7.39□□□□□ -1.23
USP53-208ENST00000514305 DSTQ03001 7570 aaKnown RBP7.37□□□□□ -1.23
USP53-208ENST00000514305 KRTAP12-3P60328 96 aa7.33□□□□□ -1.24
USP53-208ENST00000514305 PMAIP1Q13794 54 aa7.32□□□□□ -1.24
USP53-208ENST00000514305 KRTAP19-3Q7Z4W3 81 aa7.31□□□□□ -1.24
USP53-208ENST00000514305 PRO0628Q9UI54 55 aa7.25□□□□□ -1.25
USP53-208ENST00000514305 MT1GP13640 62 aa7.2□□□□□ -1.26
USP53-208ENST00000514305 GPR98Q8WXG9 6306 aa7.16□□□□□ -1.26
USP53-208ENST00000514305 MT1LQ93083 61 aa7.16□□□□□ -1.26
USP53-208ENST00000514305 MT1MQ8N339 61 aa7□□□□□ -1.29
USP53-208ENST00000514305 MT4P47944 62 aa6.92□□□□□ -1.3
USP53-208ENST00000514305 A0A0A0MQY5 61 aa6.89□□□□□ -1.31
USP53-208ENST00000514305 HMCN1Q96RW7 5635 aa6.85□□□□□ -1.31
USP53-208ENST00000514305 LCE1FQ5T754 118 aa6.85□□□□□ -1.31
USP53-208ENST00000514305 KRTAP5-1Q6L8H4 278 aa6.85□□□□□ -1.31
USP53-208ENST00000514305 KTN1-AS1Q86SY8 53 aa6.81□□□□□ -1.32
USP53-208ENST00000514305 KRTAP4-3Q9BYR4 195 aa6.8□□□□□ -1.32
USP53-208ENST00000514305 KRTAP9-6A8MVA2 160 aa6.79□□□□□ -1.32
USP53-208ENST00000514305 LCE3CQ5T5A8 94 aa6.79□□□□□ -1.32
USP53-208ENST00000514305 PRAC1Q96KF2 57 aa6.77□□□□□ -1.33
USP53-208ENST00000514305 KRTAP5-4Q6L8H1 288 aa6.75□□□□□ -1.33
USP53-208ENST00000514305 AHNAK2Q8IVF2 5795 aa6.68□□□□□ -1.34
USP53-208ENST00000514305 KRTAP5-10Q6L8G5 202 aa6.59□□□□□ -1.35
USP53-208ENST00000514305 KRTAP4-4Q9BYR3 166 aa6.57□□□□□ -1.36
USP53-208ENST00000514305 SVIPQ8NHG7 77 aa6.48□□□□□ -1.37
USP53-208ENST00000514305 KRTAP20-2Q3LI61 65 aa6.41□□□□□ -1.38
USP53-208ENST00000514305 KRTAP5-5Q701N2 237 aaPredicted RBP6.39□□□□□ -1.39
USP53-208ENST00000514305 SPRR5A0A1B0GTR4 108 aa6.37□□□□□ -1.39
USP53-208ENST00000514305 KRTAP5-7Q6L8G8 165 aa6.37□□□□□ -1.39
USP53-208ENST00000514305 KRTAP12-4P60329 112 aa6.35□□□□□ -1.39
USP53-208ENST00000514305 SYNE1Q8NF91 8797 aaKnown RBP6.15□□□□□ -1.43
USP53-208ENST00000514305 MT1AP04731 61 aa6.13□□□□□ -1.43
USP53-208ENST00000514305 KRTAP6-1Q3LI64 71 aa6□□□□□ -1.45
USP53-208ENST00000514305 LCE3EQ5T5B0 92 aa5.9□□□□□ -1.46
USP53-208ENST00000514305 OBSCNQ5VST9 7968 aa5.9□□□□□ -1.47
USP53-208ENST00000514305 LUZP6Q538Z0 58 aa5.87□□□□□ -1.47
USP53-208ENST00000514305 KRTAP5-2Q701N4 177 aa5.87□□□□□ -1.47
USP53-208ENST00000514305 NDUFAF8A1L188 74 aa5.82□□□□□ -1.48
USP53-208ENST00000514305 KRTAP5-8O75690 187 aa5.69□□□□□ -1.5
USP53-208ENST00000514305 KRTAP6-2Q3LI66 62 aa5.67□□□□□ -1.5
USP53-208ENST00000514305 MUC5ACP98088 5654 aa5.54□□□□□ -1.52
USP53-208ENST00000514305 AHNAKQ09666 5890 aaKnown RBP5.52□□□□□ -1.53
USP53-208ENST00000514305 MUC5BQ9HC84 5762 aaPredicted RBP5.51□□□□□ -1.53
USP53-208ENST00000514305 LCE3DQ9BYE3 92 aa5.05□□□□□ -1.6
USP53-208ENST00000514305 LCE1CQ5T751 118 aa4.99□□□□□ -1.61
USP53-208ENST00000514305 LCE1BQ5T7P3 118 aa4.99□□□□□ -1.61
USP53-208ENST00000514305 INE1O15225 51 aa4.34□□□□□ -1.71
USP53-208ENST00000514305 MUC19Q7Z5P9 8384 aa4.11□□□□□ -1.75
USP53-208ENST00000514305 KRTAP21-2Q3LI59 83 aa3.93□□□□□ -1.78
USP53-208ENST00000514305 PRM1P04553 51 aa3.9□□□□□ -1.79
USP53-208ENST00000514305 PHGR1C9JFL3 82 aa3.89□□□□□ -1.79
USP53-208ENST00000514305 KRTAP21-1Q3LI58 79 aa2.95□□□□□ -1.94
USP53-208ENST00000514305 MUC16Q8WXI7 14507 aa2.43□□□□□ -2.02
Retrieved 78 of 20,778 RNA–protein pairs in 5.6 ms