RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 KRTAP12-1P59990 96 aa6.29□□□□□ -1.4
VIM-208ENST00000497849 SPINT4Q6UDR6 99 aa6.29□□□□□ -1.4
VIM-208ENST00000497849 MT4P47944 62 aa6.28□□□□□ -1.4
VIM-208ENST00000497849 K7ERS5 55 aa6.27□□□□□ -1.41
VIM-208ENST00000497849 KRTAP19-3Q7Z4W3 81 aa6.24□□□□□ -1.41
VIM-208ENST00000497849 LCE4AQ5TA78 99 aa6.23□□□□□ -1.41
VIM-208ENST00000497849 KRTAP19-7Q3SYF9 63 aa6.21□□□□□ -1.42
VIM-208ENST00000497849 MT1EP04732 61 aa6.17□□□□□ -1.42
VIM-208ENST00000497849 KRTAP5-7Q6L8G8 165 aa6.16□□□□□ -1.42
VIM-208ENST00000497849 PRO0628Q9UI54 55 aa6.16□□□□□ -1.42
VIM-208ENST00000497849 CAMK2N1Q7Z7J9 78 aa6.15□□□□□ -1.42
VIM-208ENST00000497849 SVIPQ8NHG7 77 aa6.11□□□□□ -1.43
VIM-208ENST00000497849 KRTAP4-6Q9BYQ5 205 aa6.07□□□□□ -1.44
VIM-208ENST00000497849 KRTAP5-4Q6L8H1 288 aa6.04□□□□□ -1.44
VIM-208ENST00000497849 PMAIP1Q13794 54 aa6.03□□□□□ -1.44
VIM-208ENST00000497849 KRTAP5-3Q6L8H2 238 aa6.03□□□□□ -1.44
VIM-208ENST00000497849 MT1GP13640 62 aa6.01□□□□□ -1.45
VIM-208ENST00000497849 ROMO1P60602 79 aa5.96□□□□□ -1.46
VIM-208ENST00000497849 C10orf95Q9H7T3 257 aa5.95□□□□□ -1.46
VIM-208ENST00000497849 SPRR5A0A1B0GTR4 108 aa5.92□□□□□ -1.46
VIM-208ENST00000497849 PP632Q6XCG6 107 aa5.92□□□□□ -1.46
VIM-208ENST00000497849 MT1MQ8N339 61 aa5.92□□□□□ -1.46
VIM-208ENST00000497849 KRTAP19-5Q3LI72 72 aa5.85□□□□□ -1.47
VIM-208ENST00000497849 KRTAP4-3Q9BYR4 195 aa5.84□□□□□ -1.47
VIM-208ENST00000497849 TNP1P09430 55 aa5.83□□□□□ -1.48
VIM-208ENST00000497849 KRTAP25-1Q3LHN0 102 aa5.81□□□□□ -1.48
VIM-208ENST00000497849 MT1LQ93083 61 aa5.78□□□□□ -1.48
VIM-208ENST00000497849 KRTAP20-2Q3LI61 65 aa5.74□□□□□ -1.49
VIM-208ENST00000497849 KTN1-AS1Q86SY8 53 aa5.73□□□□□ -1.49
VIM-208ENST00000497849 LCE3AQ5TA76 89 aa5.65□□□□□ -1.5
VIM-208ENST00000497849 PRAC1Q96KF2 57 aa5.64□□□□□ -1.51
VIM-208ENST00000497849 KRTAP23-1A1A580 65 aa5.61□□□□□ -1.51
VIM-208ENST00000497849 KRTAP5-5Q701N2 237 aaPredicted RBP5.51□□□□□ -1.53
VIM-208ENST00000497849 KRTAP4-7Q9BYR0 210 aa5.51□□□□□ -1.53
VIM-208ENST00000497849 KRTAP12-4P60329 112 aa5.46□□□□□ -1.54
VIM-208ENST00000497849 SYNE1Q8NF91 8797 aaKnown RBP5.45□□□□□ -1.54
VIM-208ENST00000497849 KRTAP12-3P60328 96 aa5.4□□□□□ -1.54
VIM-208ENST00000497849 KRTAP4-11Q9BYQ6 195 aa5.4□□□□□ -1.54
VIM-208ENST00000497849 AHNAKQ09666 5890 aaKnown RBP5.4□□□□□ -1.55
VIM-208ENST00000497849 MUC5ACP98088 5654 aa5.39□□□□□ -1.55
VIM-208ENST00000497849 MUC5BQ9HC84 5762 aaPredicted RBP5.35□□□□□ -1.55
VIM-208ENST00000497849 KRTAP5-8O75690 187 aa5.27□□□□□ -1.57
VIM-208ENST00000497849 LOC100996750A0A140TA64 210 aa5.25□□□□□ -1.57
VIM-208ENST00000497849 KRTAP15-1Q3LI76 137 aa5.24□□□□□ -1.57
VIM-208ENST00000497849 KRTAP5-2Q701N4 177 aa5.18□□□□□ -1.58
VIM-208ENST00000497849 KRTAP19-4Q3LI73 84 aa5.08□□□□□ -1.6
VIM-208ENST00000497849 KRTAP9-9Q9BYP9 154 aa5.05□□□□□ -1.6
VIM-208ENST00000497849 OBSCNQ5VST9 7968 aa5.05□□□□□ -1.6
VIM-208ENST00000497849 LCE3CQ5T5A8 94 aa5.02□□□□□ -1.61
VIM-208ENST00000497849 KRTAP6-1Q3LI64 71 aa4.94□□□□□ -1.62
VIM-208ENST00000497849 MT1AP04731 61 aa4.9□□□□□ -1.63
VIM-208ENST00000497849 KRTAP6-2Q3LI66 62 aa4.83□□□□□ -1.64
VIM-208ENST00000497849 KRTAP9-4Q9BYQ2 154 aa4.81□□□□□ -1.64
VIM-208ENST00000497849 KRTAP9-6A8MVA2 160 aa4.78□□□□□ -1.64
VIM-208ENST00000497849 KRTAP5-1Q6L8H4 278 aa4.77□□□□□ -1.65
VIM-208ENST00000497849 LUZP6Q538Z0 58 aa4.66□□□□□ -1.66
VIM-208ENST00000497849 MT3P25713 68 aa4.49□□□□□ -1.69
VIM-208ENST00000497849 NDUFAF8A1L188 74 aa4.41□□□□□ -1.7
VIM-208ENST00000497849 LCE1EQ5T753 118 aa4.29□□□□□ -1.72
VIM-208ENST00000497849 H3BS24 57 aa4.26□□□□□ -1.73
VIM-208ENST00000497849 KRTAP4-2Q9BYR5 136 aa4.16□□□□□ -1.74
VIM-208ENST00000497849 A0A0A0MQY5 61 aa4.15□□□□□ -1.75
VIM-208ENST00000497849 LCE1BQ5T7P3 118 aa4.1□□□□□ -1.75
VIM-208ENST00000497849 KRTAP4-12Q9BQ66 201 aa4.01□□□□□ -1.77
VIM-208ENST00000497849 LCE1CQ5T751 118 aa3.99□□□□□ -1.77
VIM-208ENST00000497849 KRTAP5-11Q6L8G4 156 aa3.81□□□□□ -1.8
VIM-208ENST00000497849 LCE3DQ9BYE3 92 aa3.74□□□□□ -1.81
VIM-208ENST00000497849 LCE1FQ5T754 118 aa3.72□□□□□ -1.81
VIM-208ENST00000497849 PHGR1C9JFL3 82 aa3.7□□□□□ -1.82
VIM-208ENST00000497849 INE1O15225 51 aa3.66□□□□□ -1.82
VIM-208ENST00000497849 LCE3EQ5T5B0 92 aa3.62□□□□□ -1.83
VIM-208ENST00000497849 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.56□□□□□ -1.84
VIM-208ENST00000497849 KRTAP21-2Q3LI59 83 aa3.27□□□□□ -1.89
VIM-208ENST00000497849 MUC19Q7Z5P9 8384 aa3.15□□□□□ -1.91
VIM-208ENST00000497849 KRTAP4-4Q9BYR3 166 aa3.1□□□□□ -1.91
VIM-208ENST00000497849 PRM1P04553 51 aa3.09□□□□□ -1.91
VIM-208ENST00000497849 KRTAP21-1Q3LI58 79 aa2.8□□□□□ -1.96
VIM-208ENST00000497849 MUC16Q8WXI7 14507 aa2.17□□□□□ -2.06
Retrieved 78 of 20,778 RNA–protein pairs in 10.7 ms