RNA–Protein interactions for RNA: ENST00000496298.5

USP40-217, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 665 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-217ENST00000496298 A0A0D9SG42 100 aa7.32□□□□□ -1.24
USP40-217ENST00000496298 A0A1B0GU33 70 aa7.32□□□□□ -1.24
USP40-217ENST00000496298 SPATA8Q6RVD6 105 aa7.32□□□□□ -1.24
USP40-217ENST00000496298 KRTAP19-7Q3SYF9 63 aa7.31□□□□□ -1.24
USP40-217ENST00000496298 KRTAP12-1P59990 96 aa7.25□□□□□ -1.25
USP40-217ENST00000496298 MT1EP04732 61 aa7.23□□□□□ -1.25
USP40-217ENST00000496298 SPINT4Q6UDR6 99 aa7.23□□□□□ -1.25
USP40-217ENST00000496298 A6NED7 52 aa7.2□□□□□ -1.26
USP40-217ENST00000496298 KRTAP19-3Q7Z4W3 81 aa7.18□□□□□ -1.26
USP40-217ENST00000496298 UQCR11O14957 56 aa7.17□□□□□ -1.26
USP40-217ENST00000496298 BRK1Q8WUW1 75 aa7.16□□□□□ -1.26
USP40-217ENST00000496298 PRO0628Q9UI54 55 aa7.12□□□□□ -1.27
USP40-217ENST00000496298 CDC42SE1Q9NRR8 79 aa7.11□□□□□ -1.27
USP40-217ENST00000496298 DSTQ03001 7570 aaKnown RBP7.1□□□□□ -1.27
USP40-217ENST00000496298 KRTAP19-5Q3LI72 72 aa7.08□□□□□ -1.28
USP40-217ENST00000496298 MIR22HGQ0VDD5 57 aa7.05□□□□□ -1.28
USP40-217ENST00000496298 A8MU10 97 aa7.04□□□□□ -1.28
USP40-217ENST00000496298 MT1GP13640 62 aa7.03□□□□□ -1.28
USP40-217ENST00000496298 KRTAP15-1Q3LI76 137 aa6.97□□□□□ -1.29
USP40-217ENST00000496298 PP632Q6XCG6 107 aa6.94□□□□□ -1.3
USP40-217ENST00000496298 C10orf95Q9H7T3 257 aa6.94□□□□□ -1.3
USP40-217ENST00000496298 MT1LQ93083 61 aa6.91□□□□□ -1.3
USP40-217ENST00000496298 TNP1P09430 55 aa6.9□□□□□ -1.3
USP40-217ENST00000496298 MT1MQ8N339 61 aa6.89□□□□□ -1.31
USP40-217ENST00000496298 LCE3AQ5TA76 89 aa6.88□□□□□ -1.31
USP40-217ENST00000496298 K7ERS5 55 aa6.84□□□□□ -1.31
USP40-217ENST00000496298 PMAIP1Q13794 54 aa6.82□□□□□ -1.32
USP40-217ENST00000496298 GPR98Q8WXG9 6306 aa6.79□□□□□ -1.32
USP40-217ENST00000496298 SVIPQ8NHG7 77 aa6.72□□□□□ -1.33
USP40-217ENST00000496298 KRTAP4-3Q9BYR4 195 aa6.7□□□□□ -1.34
USP40-217ENST00000496298 HMCN1Q96RW7 5635 aa6.68□□□□□ -1.34
USP40-217ENST00000496298 KRTAP5-4Q6L8H1 288 aa6.64□□□□□ -1.35
USP40-217ENST00000496298 KRTAP12-3P60328 96 aa6.63□□□□□ -1.35
USP40-217ENST00000496298 MT4P47944 62 aa6.61□□□□□ -1.35
USP40-217ENST00000496298 KTN1-AS1Q86SY8 53 aa6.57□□□□□ -1.36
USP40-217ENST00000496298 KRTAP25-1Q3LHN0 102 aa6.5□□□□□ -1.37
USP40-217ENST00000496298 AHNAK2Q8IVF2 5795 aa6.48□□□□□ -1.37
USP40-217ENST00000496298 ROMO1P60602 79 aa6.47□□□□□ -1.37
USP40-217ENST00000496298 KRTAP5-5Q701N2 237 aaPredicted RBP6.36□□□□□ -1.39
USP40-217ENST00000496298 KRTAP5-10Q6L8G5 202 aa6.31□□□□□ -1.4
USP40-217ENST00000496298 KRTAP20-2Q3LI61 65 aa6.24□□□□□ -1.41
USP40-217ENST00000496298 PRAC1Q96KF2 57 aa6.24□□□□□ -1.41
USP40-217ENST00000496298 SPRR5A0A1B0GTR4 108 aa6.23□□□□□ -1.41
USP40-217ENST00000496298 KRTAP12-4P60329 112 aa6.16□□□□□ -1.42
USP40-217ENST00000496298 LCE3CQ5T5A8 94 aa6.11□□□□□ -1.43
USP40-217ENST00000496298 SYNE1Q8NF91 8797 aaKnown RBP6.09□□□□□ -1.43
USP40-217ENST00000496298 KRTAP5-7Q6L8G8 165 aa6.08□□□□□ -1.44
USP40-217ENST00000496298 A0A0A0MQY5 61 aa5.93□□□□□ -1.46
USP40-217ENST00000496298 MT1AP04731 61 aa5.88□□□□□ -1.47
USP40-217ENST00000496298 KRTAP6-1Q3LI64 71 aa5.84□□□□□ -1.47
USP40-217ENST00000496298 KRTAP5-2Q701N4 177 aa5.81□□□□□ -1.48
USP40-217ENST00000496298 KRTAP9-6A8MVA2 160 aa5.78□□□□□ -1.48
USP40-217ENST00000496298 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.72□□□□□ -1.49
USP40-217ENST00000496298 KRTAP6-2Q3LI66 62 aa5.58□□□□□ -1.52
USP40-217ENST00000496298 KRTAP5-8O75690 187 aa5.53□□□□□ -1.52
USP40-217ENST00000496298 MT3P25713 68 aa5.4□□□□□ -1.54
USP40-217ENST00000496298 OBSCNQ5VST9 7968 aa5.39□□□□□ -1.55
USP40-217ENST00000496298 KRTAP5-11Q6L8G4 156 aa5.37□□□□□ -1.55
USP40-217ENST00000496298 AHNAKQ09666 5890 aaKnown RBP5.36□□□□□ -1.55
USP40-217ENST00000496298 MUC5BQ9HC84 5762 aaPredicted RBP5.33□□□□□ -1.56
USP40-217ENST00000496298 MUC5ACP98088 5654 aa5.32□□□□□ -1.56
USP40-217ENST00000496298 LUZP6Q538Z0 58 aa5.27□□□□□ -1.57
USP40-217ENST00000496298 KRTAP5-1Q6L8H4 278 aa5.21□□□□□ -1.58
USP40-217ENST00000496298 NDUFAF8A1L188 74 aa5.07□□□□□ -1.6
USP40-217ENST00000496298 LCE1EQ5T753 118 aa4.99□□□□□ -1.61
USP40-217ENST00000496298 LCE1FQ5T754 118 aa4.9□□□□□ -1.63
USP40-217ENST00000496298 KRTAP4-4Q9BYR3 166 aa4.79□□□□□ -1.64
USP40-217ENST00000496298 LCE1CQ5T751 118 aa4.63□□□□□ -1.67
USP40-217ENST00000496298 LCE1BQ5T7P3 118 aa4.63□□□□□ -1.67
USP40-217ENST00000496298 LCE3DQ9BYE3 92 aa4.39□□□□□ -1.71
USP40-217ENST00000496298 INE1O15225 51 aa4.33□□□□□ -1.72
USP40-217ENST00000496298 LCE3EQ5T5B0 92 aa4.19□□□□□ -1.74
USP40-217ENST00000496298 KRTAP21-2Q3LI59 83 aa3.87□□□□□ -1.79
USP40-217ENST00000496298 PHGR1C9JFL3 82 aa3.64□□□□□ -1.83
USP40-217ENST00000496298 MUC19Q7Z5P9 8384 aa3.33□□□□□ -1.88
USP40-217ENST00000496298 PRM1P04553 51 aa3.32□□□□□ -1.88
USP40-217ENST00000496298 KRTAP21-1Q3LI58 79 aa2.78□□□□□ -1.96
USP40-217ENST00000496298 MUC16Q8WXI7 14507 aa2.44□□□□□ -2.02
Retrieved 78 of 20,778 RNA–protein pairs in 25.5 ms