RNA–Protein interactions for RNA: ENST00000495817.1

CCDC39-207, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 1,047 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-207ENST00000495817 A0A096LNI7 61 aa1.26□□□□□ -2.21
CCDC39-207ENST00000495817 TMEM167BQ9NRX6 74 aa1.26□□□□□ -2.21
CCDC39-207ENST00000495817 SPINK6Q6UWN8 80 aa1.25□□□□□ -2.21
CCDC39-207ENST00000495817 COX6B2Q6YFQ2 88 aa1.25□□□□□ -2.21
CCDC39-207ENST00000495817 SPRR1AP35321 89 aa1.24□□□□□ -2.21
CCDC39-207ENST00000495817 KRTAP19-2Q3LHN2 52 aa1.24□□□□□ -2.21
CCDC39-207ENST00000495817 H1FX-AS1Q4G0G2 97 aa1.24□□□□□ -2.21
CCDC39-207ENST00000495817 KRTAP5-10Q6L8G5 202 aa1.23□□□□□ -2.21
CCDC39-207ENST00000495817 FLGP20930 4061 aaPredicted RBP1.23□□□□□ -2.21
CCDC39-207ENST00000495817 A0A0D9SG42 100 aa1.22□□□□□ -2.21
CCDC39-207ENST00000495817 MT1HP80294 61 aa1.22□□□□□ -2.21
CCDC39-207ENST00000495817 DEFB105AQ8NG35 78 aa1.22□□□□□ -2.21
CCDC39-207ENST00000495817 SYNE2Q8WXH0 6885 aaKnown RBP1.22□□□□□ -2.21
CCDC39-207ENST00000495817 WFDC13Q8IUB5 93 aa1.21□□□□□ -2.22
CCDC39-207ENST00000495817 C6orf48Q9UBA6 75 aa1.21□□□□□ -2.22
CCDC39-207ENST00000495817 M0QY20 66 aa1.19□□□□□ -2.22
CCDC39-207ENST00000495817 MACF1Q9UPN3 7388 aaKnown RBP1.18□□□□□ -2.22
CCDC39-207ENST00000495817 SPRR1BP22528 89 aa1.18□□□□□ -2.22
CCDC39-207ENST00000495817 RPL39LQ96EH5 51 aaKnown RBP1.18□□□□□ -2.22
CCDC39-207ENST00000495817 SMIM2Q9BVW6 85 aa1.18□□□□□ -2.22
CCDC39-207ENST00000495817 NDUFA1O15239 70 aa1.17□□□□□ -2.22
CCDC39-207ENST00000495817 MUC12Q9UKN1 5478 aa1.16□□□□□ -2.22
CCDC39-207ENST00000495817 NEBP20929 6669 aa1.15□□□□□ -2.22
CCDC39-207ENST00000495817 PRLHP81277 87 aa1.14□□□□□ -2.23
CCDC39-207ENST00000495817 MUC16Q8WXI7 14507 aa1.13□□□□□ -2.23
CCDC39-207ENST00000495817 RPL39P62891 51 aaKnown RBP1.13□□□□□ -2.23
CCDC39-207ENST00000495817 MDN1Q9NU22 5596 aa1.12□□□□□ -2.23
CCDC39-207ENST00000495817 M0R2T5 61 aa1.12□□□□□ -2.23
CCDC39-207ENST00000495817 MT2AP02795 61 aa1.12□□□□□ -2.23
CCDC39-207ENST00000495817 MT1FP04733 61 aa1.12□□□□□ -2.23
CCDC39-207ENST00000495817 C9orf92A6NGG3 77 aa1.11□□□□□ -2.23
CCDC39-207ENST00000495817 POLR2KP53803 58 aaKnown RBP1.11□□□□□ -2.23
CCDC39-207ENST00000495817 KRTAP20-1Q3LI63 56 aa1.09□□□□□ -2.23
CCDC39-207ENST00000495817 KRTAP19-6Q3LI70 58 aa1.09□□□□□ -2.23
CCDC39-207ENST00000495817 TOMM7Q9P0U1 55 aa1.09□□□□□ -2.23
CCDC39-207ENST00000495817 KMT2DO14686 5537 aa1.09□□□□□ -2.24
CCDC39-207ENST00000495817 KRTAP19-3Q7Z4W3 81 aa1.08□□□□□ -2.24
CCDC39-207ENST00000495817 SPINK1P00995 79 aa1.06□□□□□ -2.24
CCDC39-207ENST00000495817 MMP24-AS1A0A0U1RRL7 71 aa1.05□□□□□ -2.24
CCDC39-207ENST00000495817 RPS29P62273 56 aaKnown RBP1.05□□□□□ -2.24
CCDC39-207ENST00000495817 S4R3F8 94 aa1.05□□□□□ -2.24
CCDC39-207ENST00000495817 IGLV5-48A0A075B6I7 105 aa1.03□□□□□ -2.24
CCDC39-207ENST00000495817 GPR98Q8WXG9 6306 aa1.02□□□□□ -2.25
CCDC39-207ENST00000495817 KRTAP2-3P0C7H8 128 aa1□□□□□ -2.25
CCDC39-207ENST00000495817 KRTAP2-4Q9BYR9 128 aa1□□□□□ -2.25
CCDC39-207ENST00000495817 MT1BP07438 61 aa0.99□□□□□ -2.25
CCDC39-207ENST00000495817 AHNAK2Q8IVF2 5795 aa0.99□□□□□ -2.25
CCDC39-207ENST00000495817 SPRR2EP22531 72 aa0.98□□□□□ -2.25
CCDC39-207ENST00000495817 SPRR2BP35325 72 aa0.98□□□□□ -2.25
CCDC39-207ENST00000495817 SPRR2AP35326 72 aa0.98□□□□□ -2.25
CCDC39-207ENST00000495817 SPRR2FQ96RM1 72 aa0.96□□□□□ -2.26
CCDC39-207ENST00000495817 KRTAP2-1Q9BYU5 128 aa0.96□□□□□ -2.26
CCDC39-207ENST00000495817 SPRR2DP22532 72 aa0.94□□□□□ -2.26
CCDC39-207ENST00000495817 MUC5BQ9HC84 5762 aaPredicted RBP0.94□□□□□ -2.26
CCDC39-207ENST00000495817 KRTAP19-8Q3LI54 63 aa0.93□□□□□ -2.26
CCDC39-207ENST00000495817 DSTQ03001 7570 aaKnown RBP0.91□□□□□ -2.26
CCDC39-207ENST00000495817 AHNAKQ09666 5890 aaKnown RBP0.9□□□□□ -2.26
CCDC39-207ENST00000495817 KRTAP8-1Q8IUC2 63 aa0.9□□□□□ -2.27
CCDC39-207ENST00000495817 SPRR2GQ9BYE4 73 aa0.9□□□□□ -2.27
CCDC39-207ENST00000495817 MT1XP80297 61 aa0.89□□□□□ -2.27
CCDC39-207ENST00000495817 MT4P47944 62 aa0.86□□□□□ -2.27
CCDC39-207ENST00000495817 PRM1P04553 51 aa0.81□□□□□ -2.28
CCDC39-207ENST00000495817 KRTAP19-7Q3SYF9 63 aa0.8□□□□□ -2.28
CCDC39-207ENST00000495817 MT1EP04732 61 aa0.79□□□□□ -2.28
CCDC39-207ENST00000495817 MUC5ACP98088 5654 aa0.78□□□□□ -2.28
CCDC39-207ENST00000495817 KRTAP20-2Q3LI61 65 aa0.77□□□□□ -2.29
CCDC39-207ENST00000495817 MT1MQ8N339 61 aa0.77□□□□□ -2.29
CCDC39-207ENST00000495817 KRTAP21-1Q3LI58 79 aa0.76□□□□□ -2.29
CCDC39-207ENST00000495817 M0QZ58 72 aa0.74□□□□□ -2.29
CCDC39-207ENST00000495817 KRTAP19-5Q3LI72 72 aa0.74□□□□□ -2.29
CCDC39-207ENST00000495817 MT1LQ93083 61 aa0.73□□□□□ -2.29
CCDC39-207ENST00000495817 MT1GP13640 62 aa0.72□□□□□ -2.29
CCDC39-207ENST00000495817 SYNE1Q8NF91 8797 aaKnown RBP0.69□□□□□ -2.3
CCDC39-207ENST00000495817 TNP1P09430 55 aa0.69□□□□□ -2.3
CCDC39-207ENST00000495817 KRTAP6-1Q3LI64 71 aa0.64□□□□□ -2.31
CCDC39-207ENST00000495817 KRTAP6-2Q3LI66 62 aa0.63□□□□□ -2.31
CCDC39-207ENST00000495817 MT1AP04731 61 aa0.61□□□□□ -2.31
CCDC39-207ENST00000495817 PHGR1C9JFL3 82 aa0.6□□□□□ -2.31
Retrieved 78 of 20,778 RNA–protein pairs in 49.7 ms