RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-223ENST00000493695 MT1FP04733 61 aa-3.46□□□□□ -2.96
SMC4-223ENST00000493695 SMIM2Q9BVW6 85 aa-3.46□□□□□ -2.96
SMC4-223ENST00000493695 IQGAP1P46940 1657 aa-3.46□□□□□ -2.96
SMC4-223ENST00000493695 NRXN3Q9Y4C0 1643 aa-3.47□□□□□ -2.96
SMC4-223ENST00000493695 CEP250Q9BV73 2442 aa-3.48□□□□□ -2.97
SMC4-223ENST00000493695 SMIM5Q71RC9 77 aa-3.49□□□□□ -2.97
SMC4-223ENST00000493695 DDX60Q8IY21 1712 aaKnown RBP-3.5□□□□□ -2.97
SMC4-223ENST00000493695 TRPM2O94759 1503 aa-3.5□□□□□ -2.97
SMC4-223ENST00000493695 WDFY4Q6ZS81 3184 aa-3.51□□□□□ -2.97
SMC4-223ENST00000493695 CLTCL1P53675 1640 aa-3.52□□□□□ -2.97
SMC4-223ENST00000493695 ADCY10Q96PN6 1610 aa-3.52□□□□□ -2.97
SMC4-223ENST00000493695 NFAT5O94916 1531 aa-3.54□□□□□ -2.98
SMC4-223ENST00000493695 KRTAP19-6Q3LI70 58 aa-3.56□□□□□ -2.98
SMC4-223ENST00000493695 ABCC8Q09428 1581 aa-3.59□□□□□ -2.98
SMC4-223ENST00000493695 MUC3AQ02505 3323 aa-3.62□□□□□ -2.99
SMC4-223ENST00000493695 FANCD2Q9BXW9 1451 aa-3.63□□□□□ -2.99
SMC4-223ENST00000493695 CMC2Q9NRP2 79 aa-3.68□□□□□ -3
SMC4-223ENST00000493695 EP400Q96L91 3159 aa-3.7□□□□□ -3
SMC4-223ENST00000493695 NDUFA1O15239 70 aa-3.75□□□□□ -3.01
SMC4-223ENST00000493695 CENPEQ02224 2701 aa-3.75□□□□□ -3.01
SMC4-223ENST00000493695 DCHS1Q96JQ0 3298 aa-3.78□□□□□ -3.01
SMC4-223ENST00000493695 DNAH12Q6ZR08 3092 aa-3.83□□□□□ -3.02
SMC4-223ENST00000493695 XIRP2A4UGR9 3374 aa-3.84□□□□□ -3.02
SMC4-223ENST00000493695 SMIM31A0A1B0GVY4 71 aa-3.85□□□□□ -3.03
SMC4-223ENST00000493695 MKI67P46013 3256 aaKnown RBP-3.86□□□□□ -3.03
SMC4-223ENST00000493695 USP34Q70CQ2 3546 aa-3.88□□□□□ -3.03
SMC4-223ENST00000493695 DNAH14Q0VDD8 3507 aa-3.93□□□□□ -3.04
SMC4-223ENST00000493695 TOMM7Q9P0U1 55 aa-4□□□□□ -3.05
SMC4-223ENST00000493695 LINC01590Q5TEZ4 76 aa-4.02□□□□□ -3.05
SMC4-223ENST00000493695 RHPN1-AS1Q9BWJ2 59 aa-4.07□□□□□ -3.06
SMC4-223ENST00000493695 CFAP47Q6ZTR5 3102 aa-4.08□□□□□ -3.06
SMC4-223ENST00000493695 UNC80Q8N2C7 3258 aa-4.08□□□□□ -3.06
SMC4-223ENST00000493695 LOC400499M0QZD8 3231 aa-4.09□□□□□ -3.06
SMC4-223ENST00000493695 ERICH3Q5RHP9 1530 aa-4.1□□□□□ -3.07
SMC4-223ENST00000493695 DEFB133Q30KQ1 61 aa-4.16□□□□□ -3.08
SMC4-223ENST00000493695 DUOX1Q9NRD9 1551 aa-4.16□□□□□ -3.08
SMC4-223ENST00000493695 ASPMQ8IZT6 3477 aa-4.16□□□□□ -3.08
SMC4-223ENST00000493695 TTTY10Q9BZA0 68 aa-4.17□□□□□ -3.08
SMC4-223ENST00000493695 SAMD9LQ8IVG5 1584 aa-4.18□□□□□ -3.08
SMC4-223ENST00000493695 SNRPGP15A8MWD9 76 aa-4.26□□□□□ -3.09
SMC4-223ENST00000493695 A0A096LNI7 61 aa-4.31□□□□□ -3.1
SMC4-223ENST00000493695 RPL39P62891 51 aaKnown RBP-4.31□□□□□ -3.1
SMC4-223ENST00000493695 HTN1P15515 57 aa-4.36□□□□□ -3.11
SMC4-223ENST00000493695 BRCA2P51587 3418 aa-4.38□□□□□ -3.11
SMC4-223ENST00000493695 IQGAP2Q13576 1575 aa-4.4□□□□□ -3.11
SMC4-223ENST00000493695 TOP2AP11388 1531 aaKnown RBP-4.41□□□□□ -3.11
SMC4-223ENST00000493695 KRTAP19-2Q3LHN2 52 aa-4.41□□□□□ -3.12
SMC4-223ENST00000493695 CD52P31358 61 aa-4.42□□□□□ -3.12
SMC4-223ENST00000493695 DEFB124Q8NES8 71 aa-4.42□□□□□ -3.12
SMC4-223ENST00000493695 ATP7AQ04656 1500 aa-4.45□□□□□ -3.12
SMC4-223ENST00000493695 RPL39LQ96EH5 51 aaKnown RBP-4.49□□□□□ -3.13
SMC4-223ENST00000493695 MROH2BQ7Z745 1585 aa-4.5□□□□□ -3.13
SMC4-223ENST00000493695 VCANP13611 3396 aa-4.54□□□□□ -3.14
SMC4-223ENST00000493695 CENPFP49454 3210 aa-4.63□□□□□ -3.15
SMC4-223ENST00000493695 TOMM5Q8N4H5 51 aa-4.66□□□□□ -3.16
SMC4-223ENST00000493695 CDH23Q9H251 3354 aa-4.67□□□□□ -3.16
SMC4-223ENST00000493695 DEFB104AQ8WTQ1 72 aa-4.77□□□□□ -3.17
SMC4-223ENST00000493695 VPS13AQ96RL7 3174 aa-4.77□□□□□ -3.17
SMC4-223ENST00000493695 H3BUX3 64 aa-4.88□□□□□ -3.19
SMC4-223ENST00000493695 LINC01556Q5JQF7 62 aa-4.99□□□□□ -3.21
SMC4-223ENST00000493695 K7EIM0 57 aa-5.11□□□□□ -3.23
SMC4-223ENST00000493695 UTRNP46939 3433 aa-5.22□□□□□ -3.24
SMC4-223ENST00000493695 ARHGAP5-AS1Q96IT6 56 aa-5.34□□□□□ -3.26
SMC4-223ENST00000493695 GCC2Q8IWJ2 1684 aa-5.37□□□□□ -3.27
SMC4-223ENST00000493695 PRCDQ00LT1 54 aa-5.44□□□□□ -3.28
SMC4-223ENST00000493695 SNRPGP62308 76 aaKnown RBP-5.52□□□□□ -3.29
SMC4-223ENST00000493695 APELAP0DMC3 54 aa-5.53□□□□□ -3.29
SMC4-223ENST00000493695 A0A096LPF7 62 aa-5.54□□□□□ -3.3
SMC4-223ENST00000493695 TMEM167AQ8TBQ9 72 aa-5.64□□□□□ -3.31
SMC4-223ENST00000493695 GOLGB1Q14789 3259 aaKnown RBP-5.95□□□□□ -3.36
SMC4-223ENST00000493695 RPL39P5Q59GN2 51 aa-5.95□□□□□ -3.36
SMC4-223ENST00000493695 HTN3P15516 51 aa-5.96□□□□□ -3.36
SMC4-223ENST00000493695 Q9Y3F1 56 aa-6.09□□□□□ -3.38
SMC4-223ENST00000493695 DEFB108AA8MXU0 73 aa-6.1□□□□□ -3.39
SMC4-223ENST00000493695 H3BSH0 61 aa-6.1□□□□□ -3.39
SMC4-223ENST00000493695 COX14Q96I36 57 aa-6.58□□□□□ -3.46
SMC4-223ENST00000493695 DEFB108BQ8NET1 73 aa-6.8□□□□□ -3.5
SMC4-223ENST00000493695 STATHP02808 62 aa-7.7□□□□□ -3.64
Retrieved 78 of 20,778 RNA–protein pairs in 8.8 ms