RNA–Protein interactions for RNA: ENST00000492512.1

GPNMB-213, Transcript of glycoprotein nmb, humanhuman

TSL 3

Gene GPNMB, Length 447 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-213ENST00000492512 KRTAP19-7Q3SYF9 63 aa5.14□□□□□ -1.59
GPNMB-213ENST00000492512 A8MU10 97 aa5.12□□□□□ -1.59
GPNMB-213ENST00000492512 MT1EP04732 61 aa5.12□□□□□ -1.59
GPNMB-213ENST00000492512 LCE4AQ5TA78 99 aa5.11□□□□□ -1.59
GPNMB-213ENST00000492512 AHNAK2Q8IVF2 5795 aa5.08□□□□□ -1.6
GPNMB-213ENST00000492512 PMAIP1Q13794 54 aa5.07□□□□□ -1.6
GPNMB-213ENST00000492512 KRTAP5-10Q6L8G5 202 aa5.07□□□□□ -1.6
GPNMB-213ENST00000492512 KRTAP19-4Q3LI73 84 aa5.01□□□□□ -1.61
GPNMB-213ENST00000492512 MT1GP13640 62 aa5□□□□□ -1.61
GPNMB-213ENST00000492512 CAMK2N1Q7Z7J9 78 aa5□□□□□ -1.61
GPNMB-213ENST00000492512 PP632Q6XCG6 107 aa4.99□□□□□ -1.61
GPNMB-213ENST00000492512 K7ERS5 55 aa4.98□□□□□ -1.61
GPNMB-213ENST00000492512 KRTAP5-7Q6L8G8 165 aa4.94□□□□□ -1.62
GPNMB-213ENST00000492512 LOC100996750A0A140TA64 210 aa4.93□□□□□ -1.62
GPNMB-213ENST00000492512 KRTAP13-4Q3LI77 160 aa4.93□□□□□ -1.62
GPNMB-213ENST00000492512 KRTAP4-6Q9BYQ5 205 aa4.93□□□□□ -1.62
GPNMB-213ENST00000492512 KRTAP5-4Q6L8H1 288 aa4.92□□□□□ -1.62
GPNMB-213ENST00000492512 KTN1-AS1Q86SY8 53 aa4.92□□□□□ -1.62
GPNMB-213ENST00000492512 KRTAP19-5Q3LI72 72 aa4.91□□□□□ -1.62
GPNMB-213ENST00000492512 MT1MQ8N339 61 aa4.91□□□□□ -1.62
GPNMB-213ENST00000492512 A0A0D9SG42 100 aa4.88□□□□□ -1.63
GPNMB-213ENST00000492512 KRTAP23-1A1A580 65 aa4.86□□□□□ -1.63
GPNMB-213ENST00000492512 KRTAP5-3Q6L8H2 238 aa4.86□□□□□ -1.63
GPNMB-213ENST00000492512 MT1LQ93083 61 aa4.83□□□□□ -1.64
GPNMB-213ENST00000492512 KRTAP4-3Q9BYR4 195 aa4.82□□□□□ -1.64
GPNMB-213ENST00000492512 SPRR5A0A1B0GTR4 108 aa4.78□□□□□ -1.64
GPNMB-213ENST00000492512 KRTAP12-1P59990 96 aa4.78□□□□□ -1.64
GPNMB-213ENST00000492512 SPINT4Q6UDR6 99 aa4.77□□□□□ -1.65
GPNMB-213ENST00000492512 ROMO1P60602 79 aa4.75□□□□□ -1.65
GPNMB-213ENST00000492512 KRTAP20-2Q3LI61 65 aa4.69□□□□□ -1.66
GPNMB-213ENST00000492512 PRAC1Q96KF2 57 aa4.68□□□□□ -1.66
GPNMB-213ENST00000492512 KRTAP4-12Q9BQ66 201 aa4.64□□□□□ -1.67
GPNMB-213ENST00000492512 C10orf95Q9H7T3 257 aa4.64□□□□□ -1.67
GPNMB-213ENST00000492512 KRTAP25-1Q3LHN0 102 aa4.6□□□□□ -1.67
GPNMB-213ENST00000492512 LCE3AQ5TA76 89 aa4.59□□□□□ -1.67
GPNMB-213ENST00000492512 KRTAP4-7Q9BYR0 210 aa4.57□□□□□ -1.68
GPNMB-213ENST00000492512 KRTAP12-4P60329 112 aa4.56□□□□□ -1.68
GPNMB-213ENST00000492512 KRTAP5-5Q701N2 237 aaPredicted RBP4.53□□□□□ -1.68
GPNMB-213ENST00000492512 TNP1P09430 55 aa4.48□□□□□ -1.69
GPNMB-213ENST00000492512 KRTAP12-3P60328 96 aa4.41□□□□□ -1.7
GPNMB-213ENST00000492512 KRTAP4-11Q9BYQ6 195 aa4.39□□□□□ -1.71
GPNMB-213ENST00000492512 SYNE1Q8NF91 8797 aaKnown RBP4.35□□□□□ -1.71
GPNMB-213ENST00000492512 KRTAP9-9Q9BYP9 154 aa4.34□□□□□ -1.71
GPNMB-213ENST00000492512 KRTAP9-4Q9BYQ2 154 aa4.34□□□□□ -1.71
GPNMB-213ENST00000492512 KRTAP15-1Q3LI76 137 aa4.28□□□□□ -1.72
GPNMB-213ENST00000492512 MUC5ACP98088 5654 aa4.28□□□□□ -1.73
GPNMB-213ENST00000492512 AHNAKQ09666 5890 aaKnown RBP4.26□□□□□ -1.73
GPNMB-213ENST00000492512 MUC5BQ9HC84 5762 aaPredicted RBP4.26□□□□□ -1.73
GPNMB-213ENST00000492512 KRTAP5-8O75690 187 aa4.25□□□□□ -1.73
GPNMB-213ENST00000492512 A0A0A0MQY5 61 aa4.24□□□□□ -1.73
GPNMB-213ENST00000492512 KRTAP5-2Q701N4 177 aa4.24□□□□□ -1.73
GPNMB-213ENST00000492512 MT1AP04731 61 aa4.1□□□□□ -1.75
GPNMB-213ENST00000492512 KRTAP6-1Q3LI64 71 aa4.1□□□□□ -1.75
GPNMB-213ENST00000492512 OBSCNQ5VST9 7968 aa4.04□□□□□ -1.76
GPNMB-213ENST00000492512 KRTAP6-2Q3LI66 62 aa4.01□□□□□ -1.77
GPNMB-213ENST00000492512 LCE3CQ5T5A8 94 aa4.01□□□□□ -1.77
GPNMB-213ENST00000492512 LUZP6Q538Z0 58 aa3.88□□□□□ -1.79
GPNMB-213ENST00000492512 KRTAP5-1Q6L8H4 278 aa3.88□□□□□ -1.79
GPNMB-213ENST00000492512 KRTAP4-2Q9BYR5 136 aa3.84□□□□□ -1.79
GPNMB-213ENST00000492512 NDUFAF8A1L188 74 aa3.82□□□□□ -1.8
GPNMB-213ENST00000492512 KRTAP9-6A8MVA2 160 aa3.78□□□□□ -1.8
GPNMB-213ENST00000492512 MT3P25713 68 aa3.78□□□□□ -1.8
GPNMB-213ENST00000492512 LCE1EQ5T753 118 aa3.56□□□□□ -1.84
GPNMB-213ENST00000492512 LCE1BQ5T7P3 118 aa3.42□□□□□ -1.86
GPNMB-213ENST00000492512 LCE1CQ5T751 118 aa3.31□□□□□ -1.88
GPNMB-213ENST00000492512 INE1O15225 51 aa3.24□□□□□ -1.89
GPNMB-213ENST00000492512 KRTAP5-11Q6L8G4 156 aa3.08□□□□□ -1.92
GPNMB-213ENST00000492512 LCE1FQ5T754 118 aa3.06□□□□□ -1.92
GPNMB-213ENST00000492512 PHGR1C9JFL3 82 aa3□□□□□ -1.93
GPNMB-213ENST00000492512 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.95□□□□□ -1.94
GPNMB-213ENST00000492512 LCE3DQ9BYE3 92 aa2.84□□□□□ -1.95
GPNMB-213ENST00000492512 LCE3EQ5T5B0 92 aa2.78□□□□□ -1.96
GPNMB-213ENST00000492512 KRTAP21-2Q3LI59 83 aa2.7□□□□□ -1.98
GPNMB-213ENST00000492512 KRTAP4-4Q9BYR3 166 aa2.56□□□□□ -2
GPNMB-213ENST00000492512 MUC19Q7Z5P9 8384 aa2.51□□□□□ -2.01
GPNMB-213ENST00000492512 PRM1P04553 51 aa2.45□□□□□ -2.02
GPNMB-213ENST00000492512 KRTAP21-1Q3LI58 79 aa2.27□□□□□ -2.05
GPNMB-213ENST00000492512 MUC16Q8WXI7 14507 aa1.73□□□□□ -2.13
Retrieved 78 of 20,778 RNA–protein pairs in 68.8 ms