RNA–Protein interactions for RNA: ENST00000488921.5

SPTLC1-207, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 3

Gene SPTLC1, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-207ENST00000488921 A6NED7 52 aa5.46□□□□□ -1.54
SPTLC1-207ENST00000488921 SPINT4Q6UDR6 99 aa5.45□□□□□ -1.54
SPTLC1-207ENST00000488921 A8MU10 97 aa5.44□□□□□ -1.54
SPTLC1-207ENST00000488921 SPRR2DP22532 72 aa5.43□□□□□ -1.54
SPTLC1-207ENST00000488921 CAMK2N1Q7Z7J9 78 aa5.42□□□□□ -1.54
SPTLC1-207ENST00000488921 KRTAP12-1P59990 96 aa5.38□□□□□ -1.55
SPTLC1-207ENST00000488921 KRTAP2-2Q9BYT5 123 aa5.38□□□□□ -1.55
SPTLC1-207ENST00000488921 KRTAP2-1Q9BYU5 128 aa5.38□□□□□ -1.55
SPTLC1-207ENST00000488921 K7ERS5 55 aa5.37□□□□□ -1.55
SPTLC1-207ENST00000488921 CDC42SE1Q9NRR8 79 aa5.29□□□□□ -1.56
SPTLC1-207ENST00000488921 KRTAP19-7Q3SYF9 63 aa5.17□□□□□ -1.58
SPTLC1-207ENST00000488921 BRK1Q8WUW1 75 aa5.17□□□□□ -1.58
SPTLC1-207ENST00000488921 MT1EP04732 61 aa5.14□□□□□ -1.59
SPTLC1-207ENST00000488921 KRTAP19-3Q7Z4W3 81 aa5.12□□□□□ -1.59
SPTLC1-207ENST00000488921 C10orf95Q9H7T3 257 aa5.1□□□□□ -1.59
SPTLC1-207ENST00000488921 TNP1P09430 55 aa5.09□□□□□ -1.59
SPTLC1-207ENST00000488921 KRTAP19-5Q3LI72 72 aa5.04□□□□□ -1.6
SPTLC1-207ENST00000488921 ROMO1P60602 79 aa5.01□□□□□ -1.61
SPTLC1-207ENST00000488921 MT1GP13640 62 aa5□□□□□ -1.61
SPTLC1-207ENST00000488921 KRTAP15-1Q3LI76 137 aa5□□□□□ -1.61
SPTLC1-207ENST00000488921 PP632Q6XCG6 107 aa5□□□□□ -1.61
SPTLC1-207ENST00000488921 DSTQ03001 7570 aaKnown RBP4.99□□□□□ -1.61
SPTLC1-207ENST00000488921 KRTAP25-1Q3LHN0 102 aa4.99□□□□□ -1.61
SPTLC1-207ENST00000488921 LCE3AQ5TA76 89 aa4.93□□□□□ -1.62
SPTLC1-207ENST00000488921 MT1LQ93083 61 aa4.91□□□□□ -1.62
SPTLC1-207ENST00000488921 PMAIP1Q13794 54 aa4.9□□□□□ -1.63
SPTLC1-207ENST00000488921 MT1MQ8N339 61 aa4.9□□□□□ -1.63
SPTLC1-207ENST00000488921 KRTAP23-1A1A580 65 aa4.89□□□□□ -1.63
SPTLC1-207ENST00000488921 PRO0628Q9UI54 55 aa4.89□□□□□ -1.63
SPTLC1-207ENST00000488921 KRTAP12-3P60328 96 aa4.75□□□□□ -1.65
SPTLC1-207ENST00000488921 KRTAP4-3Q9BYR4 195 aa4.74□□□□□ -1.65
SPTLC1-207ENST00000488921 MT4P47944 62 aa4.73□□□□□ -1.65
SPTLC1-207ENST00000488921 SVIPQ8NHG7 77 aa4.71□□□□□ -1.66
SPTLC1-207ENST00000488921 KRTAP5-4Q6L8H1 288 aa4.69□□□□□ -1.66
SPTLC1-207ENST00000488921 HMCN1Q96RW7 5635 aa4.67□□□□□ -1.66
SPTLC1-207ENST00000488921 GPR98Q8WXG9 6306 aa4.66□□□□□ -1.66
SPTLC1-207ENST00000488921 KTN1-AS1Q86SY8 53 aa4.57□□□□□ -1.68
SPTLC1-207ENST00000488921 PRAC1Q96KF2 57 aa4.54□□□□□ -1.68
SPTLC1-207ENST00000488921 AHNAK2Q8IVF2 5795 aa4.5□□□□□ -1.69
SPTLC1-207ENST00000488921 KRTAP5-5Q701N2 237 aaPredicted RBP4.49□□□□□ -1.69
SPTLC1-207ENST00000488921 KRTAP5-10Q6L8G5 202 aa4.46□□□□□ -1.7
SPTLC1-207ENST00000488921 SPRR5A0A1B0GTR4 108 aa4.43□□□□□ -1.7
SPTLC1-207ENST00000488921 KRTAP20-2Q3LI61 65 aa4.43□□□□□ -1.7
SPTLC1-207ENST00000488921 KRTAP12-4P60329 112 aa4.42□□□□□ -1.7
SPTLC1-207ENST00000488921 LCE3CQ5T5A8 94 aa4.36□□□□□ -1.71
SPTLC1-207ENST00000488921 KRTAP5-7Q6L8G8 165 aa4.3□□□□□ -1.72
SPTLC1-207ENST00000488921 SYNE1Q8NF91 8797 aaKnown RBP4.28□□□□□ -1.72
SPTLC1-207ENST00000488921 KRTAP5-11Q6L8G4 156 aa4.23□□□□□ -1.73
SPTLC1-207ENST00000488921 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.21□□□□□ -1.74
SPTLC1-207ENST00000488921 MT1AP04731 61 aa4.19□□□□□ -1.74
SPTLC1-207ENST00000488921 KRTAP6-1Q3LI64 71 aa4.14□□□□□ -1.75
SPTLC1-207ENST00000488921 KRTAP5-2Q701N4 177 aa4.11□□□□□ -1.75
SPTLC1-207ENST00000488921 KRTAP9-6A8MVA2 160 aa4.07□□□□□ -1.76
SPTLC1-207ENST00000488921 KRTAP6-2Q3LI66 62 aa3.97□□□□□ -1.77
SPTLC1-207ENST00000488921 LCE1EQ5T753 118 aa3.91□□□□□ -1.78
SPTLC1-207ENST00000488921 KRTAP5-8O75690 187 aa3.9□□□□□ -1.79
SPTLC1-207ENST00000488921 LUZP6Q538Z0 58 aa3.89□□□□□ -1.79
SPTLC1-207ENST00000488921 A0A0A0MQY5 61 aa3.85□□□□□ -1.79
SPTLC1-207ENST00000488921 MT3P25713 68 aa3.85□□□□□ -1.79
SPTLC1-207ENST00000488921 OBSCNQ5VST9 7968 aa3.78□□□□□ -1.8
SPTLC1-207ENST00000488921 MUC5BQ9HC84 5762 aaPredicted RBP3.69□□□□□ -1.82
SPTLC1-207ENST00000488921 MUC5ACP98088 5654 aa3.69□□□□□ -1.82
SPTLC1-207ENST00000488921 KRTAP5-1Q6L8H4 278 aa3.67□□□□□ -1.82
SPTLC1-207ENST00000488921 AHNAKQ09666 5890 aaKnown RBP3.64□□□□□ -1.83
SPTLC1-207ENST00000488921 KRTAP4-4Q9BYR3 166 aa3.54□□□□□ -1.84
SPTLC1-207ENST00000488921 LCE1FQ5T754 118 aa3.5□□□□□ -1.85
SPTLC1-207ENST00000488921 NDUFAF8A1L188 74 aa3.49□□□□□ -1.85
SPTLC1-207ENST00000488921 LCE1BQ5T7P3 118 aa3.31□□□□□ -1.88
SPTLC1-207ENST00000488921 LCE1CQ5T751 118 aa3.28□□□□□ -1.88
SPTLC1-207ENST00000488921 LCE3DQ9BYE3 92 aa3.25□□□□□ -1.89
SPTLC1-207ENST00000488921 LCE3EQ5T5B0 92 aa3.13□□□□□ -1.91
SPTLC1-207ENST00000488921 INE1O15225 51 aa2.92□□□□□ -1.94
SPTLC1-207ENST00000488921 KRTAP21-2Q3LI59 83 aa2.73□□□□□ -1.97
SPTLC1-207ENST00000488921 PHGR1C9JFL3 82 aa2.61□□□□□ -1.99
SPTLC1-207ENST00000488921 PRM1P04553 51 aa2.57□□□□□ -2
SPTLC1-207ENST00000488921 MUC19Q7Z5P9 8384 aa2.36□□□□□ -2.03
SPTLC1-207ENST00000488921 KRTAP21-1Q3LI58 79 aa2□□□□□ -2.09
SPTLC1-207ENST00000488921 MUC16Q8WXI7 14507 aa1.7□□□□□ -2.14
Retrieved 78 of 20,778 RNA–protein pairs in 291.7 ms