RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 LINC01590Q5TEZ4 76 aa-1.24□□□□□ -2.61
PTPN4-212ENST00000488896 SNRPGP15A8MWD9 76 aa-1.25□□□□□ -2.61
PTPN4-212ENST00000488896 KRTAP20-1Q3LI63 56 aa-1.25□□□□□ -2.61
PTPN4-212ENST00000488896 RHPN1-AS1Q9BWJ2 59 aa-1.25□□□□□ -2.61
PTPN4-212ENST00000488896 A0A096LNI7 61 aa-1.26□□□□□ -2.61
PTPN4-212ENST00000488896 TTTY10Q9BZA0 68 aa-1.26□□□□□ -2.61
PTPN4-212ENST00000488896 CEP250Q9BV73 2442 aa-1.28□□□□□ -2.61
PTPN4-212ENST00000488896 DEFB133Q30KQ1 61 aa-1.29□□□□□ -2.62
PTPN4-212ENST00000488896 CRYBG3Q68DQ2 2970 aa-1.3□□□□□ -2.62
PTPN4-212ENST00000488896 HTN1P15515 57 aa-1.3□□□□□ -2.62
PTPN4-212ENST00000488896 ERICH3Q5RHP9 1530 aa-1.3□□□□□ -2.62
PTPN4-212ENST00000488896 RPL39P62891 51 aaKnown RBP-1.31□□□□□ -2.62
PTPN4-212ENST00000488896 CFAP54Q96N23 3096 aa-1.33□□□□□ -2.62
PTPN4-212ENST00000488896 TOMM5Q8N4H5 51 aa-1.34□□□□□ -2.62
PTPN4-212ENST00000488896 MYO15AQ9UKN7 3530 aa-1.35□□□□□ -2.63
PTPN4-212ENST00000488896 PRUNE2Q8WUY3 3088 aa-1.36□□□□□ -2.63
PTPN4-212ENST00000488896 FREM2Q5SZK8 3169 aa-1.37□□□□□ -2.63
PTPN4-212ENST00000488896 ABCA13Q86UQ4 5058 aa-1.37□□□□□ -2.63
PTPN4-212ENST00000488896 CD52P31358 61 aa-1.38□□□□□ -2.63
PTPN4-212ENST00000488896 RPL39LQ96EH5 51 aaKnown RBP-1.38□□□□□ -2.63
PTPN4-212ENST00000488896 VPS13CQ709C8 3753 aa-1.39□□□□□ -2.63
PTPN4-212ENST00000488896 DEFB104AQ8WTQ1 72 aa-1.4□□□□□ -2.63
PTPN4-212ENST00000488896 KRTAP19-6Q3LI70 58 aa-1.43□□□□□ -2.64
PTPN4-212ENST00000488896 SAMD9LQ8IVG5 1584 aa-1.43□□□□□ -2.64
PTPN4-212ENST00000488896 DUOX1Q9NRD9 1551 aa-1.43□□□□□ -2.64
PTPN4-212ENST00000488896 BOD1L1Q8NFC6 3051 aa-1.45□□□□□ -2.64
PTPN4-212ENST00000488896 PCNTO95613 3336 aa-1.48□□□□□ -2.65
PTPN4-212ENST00000488896 DMDP11532 3685 aa-1.5□□□□□ -2.65
PTPN4-212ENST00000488896 FRYLO94915 3013 aa-1.5□□□□□ -2.65
PTPN4-212ENST00000488896 IQGAP2Q13576 1575 aa-1.51□□□□□ -2.65
PTPN4-212ENST00000488896 DEFB124Q8NES8 71 aa-1.51□□□□□ -2.65
PTPN4-212ENST00000488896 CEP350Q5VT06 3117 aa-1.53□□□□□ -2.65
PTPN4-212ENST00000488896 TOP2AP11388 1531 aaKnown RBP-1.53□□□□□ -2.65
PTPN4-212ENST00000488896 WDFY3Q8IZQ1 3526 aa-1.54□□□□□ -2.66
PTPN4-212ENST00000488896 CENPEQ02224 2701 aa-1.57□□□□□ -2.66
PTPN4-212ENST00000488896 SZT2Q5T011 3432 aa-1.59□□□□□ -2.66
PTPN4-212ENST00000488896 SPEGQ15772 3267 aa-1.59□□□□□ -2.66
PTPN4-212ENST00000488896 ATP7AQ04656 1500 aa-1.59□□□□□ -2.66
PTPN4-212ENST00000488896 LINC01556Q5JQF7 62 aa-1.6□□□□□ -2.67
PTPN4-212ENST00000488896 MROH2BQ7Z745 1585 aa-1.6□□□□□ -2.67
PTPN4-212ENST00000488896 H3BUX3 64 aa-1.61□□□□□ -2.67
PTPN4-212ENST00000488896 DNAH12Q6ZR08 3092 aa-1.64□□□□□ -2.67
PTPN4-212ENST00000488896 K7EIM0 57 aa-1.67□□□□□ -2.68
PTPN4-212ENST00000488896 WDFY4Q6ZS81 3184 aa-1.67□□□□□ -2.68
PTPN4-212ENST00000488896 ARHGAP5-AS1Q96IT6 56 aa-1.68□□□□□ -2.68
PTPN4-212ENST00000488896 EP400Q96L91 3159 aa-1.68□□□□□ -2.68
PTPN4-212ENST00000488896 KRTAP19-2Q3LHN2 52 aa-1.69□□□□□ -2.68
PTPN4-212ENST00000488896 MKI67P46013 3256 aaKnown RBP-1.71□□□□□ -2.68
PTPN4-212ENST00000488896 DCHS1Q96JQ0 3298 aa-1.71□□□□□ -2.68
PTPN4-212ENST00000488896 MUC3AQ02505 3323 aa-1.73□□□□□ -2.69
PTPN4-212ENST00000488896 APELAP0DMC3 54 aa-1.74□□□□□ -2.69
PTPN4-212ENST00000488896 A0A096LPF7 62 aa-1.76□□□□□ -2.69
PTPN4-212ENST00000488896 SNRPGP62308 76 aaKnown RBP-1.76□□□□□ -2.69
PTPN4-212ENST00000488896 PRCDQ00LT1 54 aa-1.78□□□□□ -2.69
PTPN4-212ENST00000488896 XIRP2A4UGR9 3374 aa-1.79□□□□□ -2.7
PTPN4-212ENST00000488896 LOC400499M0QZD8 3231 aa-1.8□□□□□ -2.7
PTPN4-212ENST00000488896 TMEM167AQ8TBQ9 72 aa-1.82□□□□□ -2.7
PTPN4-212ENST00000488896 UNC80Q8N2C7 3258 aa-1.82□□□□□ -2.7
PTPN4-212ENST00000488896 CFAP47Q6ZTR5 3102 aa-1.82□□□□□ -2.7
PTPN4-212ENST00000488896 USP34Q70CQ2 3546 aa-1.83□□□□□ -2.7
PTPN4-212ENST00000488896 DNAH14Q0VDD8 3507 aa-1.83□□□□□ -2.7
PTPN4-212ENST00000488896 H3BSH0 61 aa-1.89□□□□□ -2.71
PTPN4-212ENST00000488896 VCANP13611 3396 aa-1.91□□□□□ -2.71
PTPN4-212ENST00000488896 HTN3P15516 51 aa-1.91□□□□□ -2.72
PTPN4-212ENST00000488896 GCC2Q8IWJ2 1684 aa-1.91□□□□□ -2.72
PTPN4-212ENST00000488896 ASPMQ8IZT6 3477 aa-1.91□□□□□ -2.72
PTPN4-212ENST00000488896 DEFB108AA8MXU0 73 aa-1.94□□□□□ -2.72
PTPN4-212ENST00000488896 RPL39P5Q59GN2 51 aa-1.94□□□□□ -2.72
PTPN4-212ENST00000488896 BRCA2P51587 3418 aa-2□□□□□ -2.73
PTPN4-212ENST00000488896 Q9Y3F1 56 aa-2.06□□□□□ -2.74
PTPN4-212ENST00000488896 CENPFP49454 3210 aa-2.11□□□□□ -2.75
PTPN4-212ENST00000488896 CDH23Q9H251 3354 aa-2.12□□□□□ -2.75
PTPN4-212ENST00000488896 DEFB108BQ8NET1 73 aa-2.22□□□□□ -2.76
PTPN4-212ENST00000488896 VPS13AQ96RL7 3174 aa-2.22□□□□□ -2.77
PTPN4-212ENST00000488896 COX14Q96I36 57 aa-2.24□□□□□ -2.77
PTPN4-212ENST00000488896 UTRNP46939 3433 aa-2.4□□□□□ -2.79
PTPN4-212ENST00000488896 GOLGB1Q14789 3259 aaKnown RBP-2.55□□□□□ -2.82
PTPN4-212ENST00000488896 STATHP02808 62 aa-2.56□□□□□ -2.82
Retrieved 78 of 20,778 RNA–protein pairs in 32.7 ms