RNA–Protein interactions for RNA: ENST00000483690.1

MCF2-207, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

TSL 3

Gene MCF2, Length 752 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-207ENST00000483690 RPL39P62891 51 aaKnown RBP0.85□□□□□ -2.27
MCF2-207ENST00000483690 KRTAP20-1Q3LI63 56 aa0.85□□□□□ -2.27
MCF2-207ENST00000483690 WFDC13Q8IUB5 93 aa0.85□□□□□ -2.27
MCF2-207ENST00000483690 TMEM167AQ8TBQ9 72 aa0.85□□□□□ -2.27
MCF2-207ENST00000483690 RHPN1-AS1Q9BWJ2 59 aa0.85□□□□□ -2.27
MCF2-207ENST00000483690 PRO0255Q9UI72 69 aa0.85□□□□□ -2.27
MCF2-207ENST00000483690 SPRR1AP35321 89 aa0.84□□□□□ -2.27
MCF2-207ENST00000483690 KLK9Q2XQG4 91 aa0.84□□□□□ -2.27
MCF2-207ENST00000483690 SPINK6Q6UWN8 80 aa0.84□□□□□ -2.27
MCF2-207ENST00000483690 WFDC10BQ8IUB3 73 aa0.84□□□□□ -2.27
MCF2-207ENST00000483690 RPL39LQ96EH5 51 aaKnown RBP0.84□□□□□ -2.27
MCF2-207ENST00000483690 MT1HL1P0DM35 61 aa0.83□□□□□ -2.28
MCF2-207ENST00000483690 A0A096LPF7 62 aa0.82□□□□□ -2.28
MCF2-207ENST00000483690 MMP24-AS1A0A0U1RRL7 71 aa0.82□□□□□ -2.28
MCF2-207ENST00000483690 HTN1P15515 57 aa0.82□□□□□ -2.28
MCF2-207ENST00000483690 PRCDQ00LT1 54 aa0.82□□□□□ -2.28
MCF2-207ENST00000483690 DEFB105AQ8NG35 78 aa0.82□□□□□ -2.28
MCF2-207ENST00000483690 FAT4Q6V0I7 4981 aa0.81□□□□□ -2.28
MCF2-207ENST00000483690 SPART-AS1P0CW21 52 aa0.81□□□□□ -2.28
MCF2-207ENST00000483690 NOP10Q9NPE3 64 aaKnown RBP0.81□□□□□ -2.28
MCF2-207ENST00000483690 A8MTW9 85 aa0.8□□□□□ -2.28
MCF2-207ENST00000483690 SPRR1BP22528 89 aa0.8□□□□□ -2.28
MCF2-207ENST00000483690 M0QY20 66 aa0.79□□□□□ -2.28
MCF2-207ENST00000483690 PHGR1C9JFL3 82 aa0.78□□□□□ -2.28
MCF2-207ENST00000483690 NEBP20929 6669 aa0.77□□□□□ -2.29
MCF2-207ENST00000483690 CLPSL2Q6UWE3 100 aa0.77□□□□□ -2.29
MCF2-207ENST00000483690 S4R3F8 94 aa0.77□□□□□ -2.29
MCF2-207ENST00000483690 M0R2T5 61 aa0.76□□□□□ -2.29
MCF2-207ENST00000483690 PRLHP81277 87 aa0.76□□□□□ -2.29
MCF2-207ENST00000483690 LINC01556Q5JQF7 62 aa0.76□□□□□ -2.29
MCF2-207ENST00000483690 SYNE2Q8WXH0 6885 aaKnown RBP0.75□□□□□ -2.29
MCF2-207ENST00000483690 H3BNG1 76 aa0.75□□□□□ -2.29
MCF2-207ENST00000483690 SSPOA2VEC9 5147 aa0.75□□□□□ -2.29
MCF2-207ENST00000483690 GPR98Q8WXG9 6306 aa0.75□□□□□ -2.29
MCF2-207ENST00000483690 USH2AO75445 5202 aa0.74□□□□□ -2.29
MCF2-207ENST00000483690 MACF1Q9UPN3 7388 aaKnown RBP0.73□□□□□ -2.29
MCF2-207ENST00000483690 A0A096LNI7 61 aa0.73□□□□□ -2.29
MCF2-207ENST00000483690 MT1HP80294 61 aa0.73□□□□□ -2.29
MCF2-207ENST00000483690 TOMM7Q9P0U1 55 aa0.73□□□□□ -2.29
MCF2-207ENST00000483690 KMT2DO14686 5537 aa0.7□□□□□ -2.3
MCF2-207ENST00000483690 SPINK1P00995 79 aa0.69□□□□□ -2.3
MCF2-207ENST00000483690 MDN1Q9NU22 5596 aa0.69□□□□□ -2.3
MCF2-207ENST00000483690 KRTAP19-2Q3LHN2 52 aa0.68□□□□□ -2.3
MCF2-207ENST00000483690 KRTAP19-6Q3LI70 58 aa0.68□□□□□ -2.3
MCF2-207ENST00000483690 MUC12Q9UKN1 5478 aa0.68□□□□□ -2.3
MCF2-207ENST00000483690 SPRR2EP22531 72 aa0.67□□□□□ -2.3
MCF2-207ENST00000483690 SPRR2BP35325 72 aa0.67□□□□□ -2.3
MCF2-207ENST00000483690 SPRR2AP35326 72 aa0.67□□□□□ -2.3
MCF2-207ENST00000483690 M0QZ58 72 aa0.66□□□□□ -2.3
MCF2-207ENST00000483690 C9orf92A6NGG3 77 aa0.65□□□□□ -2.31
MCF2-207ENST00000483690 SPRR2DP22532 72 aa0.65□□□□□ -2.31
MCF2-207ENST00000483690 MT2AP02795 61 aa0.63□□□□□ -2.31
MCF2-207ENST00000483690 SPRR2FQ96RM1 72 aa0.63□□□□□ -2.31
MCF2-207ENST00000483690 MT1FP04733 61 aa0.62□□□□□ -2.31
MCF2-207ENST00000483690 DSTQ03001 7570 aaKnown RBP0.61□□□□□ -2.31
MCF2-207ENST00000483690 MT4P47944 62 aa0.6□□□□□ -2.31
MCF2-207ENST00000483690 TNP1P09430 55 aa0.59□□□□□ -2.31
MCF2-207ENST00000483690 RPS29P62273 56 aaKnown RBP0.58□□□□□ -2.32
MCF2-207ENST00000483690 KRTAP8-1Q8IUC2 63 aa0.57□□□□□ -2.32
MCF2-207ENST00000483690 MT1BP07438 61 aa0.55□□□□□ -2.32
MCF2-207ENST00000483690 MUC5BQ9HC84 5762 aaPredicted RBP0.53□□□□□ -2.33
MCF2-207ENST00000483690 AHNAKQ09666 5890 aaKnown RBP0.53□□□□□ -2.33
MCF2-207ENST00000483690 PRM1P04553 51 aa0.52□□□□□ -2.33
MCF2-207ENST00000483690 KRTAP19-8Q3LI54 63 aa0.52□□□□□ -2.33
MCF2-207ENST00000483690 SYNE1Q8NF91 8797 aaKnown RBP0.52□□□□□ -2.33
MCF2-207ENST00000483690 MUC5ACP98088 5654 aa0.51□□□□□ -2.33
MCF2-207ENST00000483690 MT1XP80297 61 aa0.51□□□□□ -2.33
MCF2-207ENST00000483690 SPRR2GQ9BYE4 73 aa0.5□□□□□ -2.33
MCF2-207ENST00000483690 KRTAP20-2Q3LI61 65 aa0.48□□□□□ -2.33
MCF2-207ENST00000483690 MT1EP04732 61 aa0.45□□□□□ -2.34
MCF2-207ENST00000483690 KRTAP19-7Q3SYF9 63 aa0.45□□□□□ -2.34
MCF2-207ENST00000483690 MT1AP04731 61 aa0.44□□□□□ -2.34
MCF2-207ENST00000483690 KRTAP19-5Q3LI72 72 aa0.44□□□□□ -2.34
MCF2-207ENST00000483690 MT1MQ8N339 61 aa0.43□□□□□ -2.34
MCF2-207ENST00000483690 MT1GP13640 62 aa0.42□□□□□ -2.34
MCF2-207ENST00000483690 MT1LQ93083 61 aa0.42□□□□□ -2.34
MCF2-207ENST00000483690 KRTAP6-2Q3LI66 62 aa0.39□□□□□ -2.35
MCF2-207ENST00000483690 KRTAP6-1Q3LI64 71 aa0.38□□□□□ -2.35
Retrieved 78 of 20,778 RNA–protein pairs in 61 ms