RNA–Protein interactions for RNA: ENST00000479300.1

VCP-205, Transcript of valosin containing protein, humanhuman

TSL 1 (best)

Gene VCP, Length 559 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-205ENST00000479300 KRTAP2-3P0C7H8 128 aa3.01□□□□□ -1.93
VCP-205ENST00000479300 KRTAP2-4Q9BYR9 128 aa3.01□□□□□ -1.93
VCP-205ENST00000479300 KRTAP10-5P60370 271 aa2.99□□□□□ -1.93
VCP-205ENST00000479300 KRTAP12-1P59990 96 aa2.97□□□□□ -1.93
VCP-205ENST00000479300 KRTAP12-2P59991 146 aa2.97□□□□□ -1.93
VCP-205ENST00000479300 KRTAP19-8Q3LI54 63 aa2.97□□□□□ -1.93
VCP-205ENST00000479300 SPRR2GQ9BYE4 73 aa2.96□□□□□ -1.94
VCP-205ENST00000479300 M0QZ58 72 aa2.94□□□□□ -1.94
VCP-205ENST00000479300 PLAC4Q8WY50 150 aa2.93□□□□□ -1.94
VCP-205ENST00000479300 SPRR2EP22531 72 aa2.9□□□□□ -1.95
VCP-205ENST00000479300 SPRR2BP35325 72 aa2.9□□□□□ -1.95
VCP-205ENST00000479300 SPRR2AP35326 72 aa2.9□□□□□ -1.95
VCP-205ENST00000479300 KRTAP2-2Q9BYT5 123 aa2.9□□□□□ -1.95
VCP-205ENST00000479300 KRTAP2-1Q9BYU5 128 aa2.9□□□□□ -1.95
VCP-205ENST00000479300 SPRR2FQ96RM1 72 aa2.89□□□□□ -1.95
VCP-205ENST00000479300 PP632Q6XCG6 107 aa2.87□□□□□ -1.95
VCP-205ENST00000479300 PRO2289Q9P1D8 64 aa2.87□□□□□ -1.95
VCP-205ENST00000479300 GPR98Q8WXG9 6306 aa2.86□□□□□ -1.95
VCP-205ENST00000479300 R4GN34 69 aa2.85□□□□□ -1.95
VCP-205ENST00000479300 CAMK2N1Q7Z7J9 78 aa2.83□□□□□ -1.96
VCP-205ENST00000479300 SPRR2DP22532 72 aa2.8□□□□□ -1.96
VCP-205ENST00000479300 MT1XP80297 61 aa2.78□□□□□ -1.96
VCP-205ENST00000479300 KRTAP8-1Q8IUC2 63 aa2.78□□□□□ -1.96
VCP-205ENST00000479300 SPRR5A0A1B0GTR4 108 aa2.76□□□□□ -1.97
VCP-205ENST00000479300 INE1O15225 51 aa2.7□□□□□ -1.98
VCP-205ENST00000479300 LCE1FQ5T754 118 aa2.7□□□□□ -1.98
VCP-205ENST00000479300 DSTQ03001 7570 aaKnown RBP2.68□□□□□ -1.98
VCP-205ENST00000479300 KRTAP10-7P60409 375 aaPredicted RBP2.65□□□□□ -1.99
VCP-205ENST00000479300 MT3P25713 68 aa2.64□□□□□ -1.99
VCP-205ENST00000479300 KRTAP10-12P60413 245 aa2.62□□□□□ -1.99
VCP-205ENST00000479300 KRTAP5-3Q6L8H2 238 aa2.62□□□□□ -1.99
VCP-205ENST00000479300 TNP1P09430 55 aa2.61□□□□□ -1.99
VCP-205ENST00000479300 HMCN1Q96RW7 5635 aa2.59□□□□□ -1.99
VCP-205ENST00000479300 AHNAK2Q8IVF2 5795 aa2.56□□□□□ -2
VCP-205ENST00000479300 KRTAP5-10Q6L8G5 202 aa2.53□□□□□ -2
VCP-205ENST00000479300 KRTAP19-7Q3SYF9 63 aa2.5□□□□□ -2.01
VCP-205ENST00000479300 LCE3CQ5T5A8 94 aa2.5□□□□□ -2.01
VCP-205ENST00000479300 MT4P47944 62 aa2.49□□□□□ -2.01
VCP-205ENST00000479300 KRTAP19-3Q7Z4W3 81 aa2.48□□□□□ -2.01
VCP-205ENST00000479300 MT1EP04732 61 aa2.47□□□□□ -2.01
VCP-205ENST00000479300 KRTAP5-7Q6L8G8 165 aa2.45□□□□□ -2.02
VCP-205ENST00000479300 KRTAP19-5Q3LI72 72 aa2.41□□□□□ -2.02
VCP-205ENST00000479300 KRTAP5-4Q6L8H1 288 aa2.41□□□□□ -2.02
VCP-205ENST00000479300 MT1GP13640 62 aa2.4□□□□□ -2.03
VCP-205ENST00000479300 LCE3AQ5TA76 89 aa2.38□□□□□ -2.03
VCP-205ENST00000479300 MT1MQ8N339 61 aa2.37□□□□□ -2.03
VCP-205ENST00000479300 KRTAP4-3Q9BYR4 195 aa2.37□□□□□ -2.03
VCP-205ENST00000479300 MT1LQ93083 61 aa2.33□□□□□ -2.04
VCP-205ENST00000479300 LCE3EQ5T5B0 92 aa2.3□□□□□ -2.04
VCP-205ENST00000479300 KRTAP20-2Q3LI61 65 aa2.29□□□□□ -2.04
VCP-205ENST00000479300 KRTAP12-3P60328 96 aa2.28□□□□□ -2.04
VCP-205ENST00000479300 LCE1EQ5T753 118 aa2.23□□□□□ -2.05
VCP-205ENST00000479300 KRTAP5-5Q701N2 237 aaPredicted RBP2.22□□□□□ -2.05
VCP-205ENST00000479300 KRTAP5-11Q6L8G4 156 aa2.2□□□□□ -2.06
VCP-205ENST00000479300 AHNAKQ09666 5890 aaKnown RBP2.19□□□□□ -2.06
VCP-205ENST00000479300 MUC5ACP98088 5654 aa2.17□□□□□ -2.06
VCP-205ENST00000479300 SYNE1Q8NF91 8797 aaKnown RBP2.17□□□□□ -2.06
VCP-205ENST00000479300 KRTAP12-4P60329 112 aa2.16□□□□□ -2.06
VCP-205ENST00000479300 MUC5BQ9HC84 5762 aaPredicted RBP2.14□□□□□ -2.07
VCP-205ENST00000479300 KRTAP9-6A8MVA2 160 aa2.12□□□□□ -2.07
VCP-205ENST00000479300 KRTAP5-8O75690 187 aa2.1□□□□□ -2.07
VCP-205ENST00000479300 KRTAP5-2Q701N4 177 aa2.08□□□□□ -2.08
VCP-205ENST00000479300 MT1AP04731 61 aa2□□□□□ -2.09
VCP-205ENST00000479300 OBSCNQ5VST9 7968 aa2□□□□□ -2.09
VCP-205ENST00000479300 KRTAP6-1Q3LI64 71 aa1.99□□□□□ -2.09
VCP-205ENST00000479300 LCE3DQ9BYE3 92 aa1.96□□□□□ -2.1
VCP-205ENST00000479300 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.95□□□□□ -2.1
VCP-205ENST00000479300 KRTAP6-2Q3LI66 62 aa1.94□□□□□ -2.1
VCP-205ENST00000479300 KRTAP5-1Q6L8H4 278 aa1.92□□□□□ -2.1
VCP-205ENST00000479300 PRM1P04553 51 aa1.73□□□□□ -2.13
VCP-205ENST00000479300 KRTAP4-4Q9BYR3 166 aa1.66□□□□□ -2.14
VCP-205ENST00000479300 LCE1BQ5T7P3 118 aa1.63□□□□□ -2.15
VCP-205ENST00000479300 LCE1CQ5T751 118 aa1.58□□□□□ -2.16
VCP-205ENST00000479300 PHGR1C9JFL3 82 aa1.45□□□□□ -2.18
VCP-205ENST00000479300 KRTAP21-2Q3LI59 83 aa1.32□□□□□ -2.2
VCP-205ENST00000479300 MUC19Q7Z5P9 8384 aa1.26□□□□□ -2.21
VCP-205ENST00000479300 KRTAP21-1Q3LI58 79 aa1.17□□□□□ -2.22
VCP-205ENST00000479300 MUC16Q8WXI7 14507 aa0.89□□□□□ -2.27
Retrieved 78 of 20,778 RNA–protein pairs in 119.7 ms