RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 A0A1B0GU69 56 aa2□□□□□ -2.09
USP4-209ENST00000475873 COX7BP24311 80 aa2□□□□□ -2.09
USP4-209ENST00000475873 KRTAP12-2P59991 146 aa2□□□□□ -2.09
USP4-209ENST00000475873 WFDC13Q8IUB5 93 aa1.99□□□□□ -2.09
USP4-209ENST00000475873 KRTAP15-1Q3LI76 137 aa1.98□□□□□ -2.09
USP4-209ENST00000475873 AHNAKQ09666 5890 aaKnown RBP1.97□□□□□ -2.09
USP4-209ENST00000475873 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.97□□□□□ -2.09
USP4-209ENST00000475873 SMIM11BQ8TCY0 68 aa1.97□□□□□ -2.09
USP4-209ENST00000475873 ACYP2P14621 99 aa1.96□□□□□ -2.1
USP4-209ENST00000475873 Q6ZQY7 126 aa1.96□□□□□ -2.1
USP4-209ENST00000475873 H1FX-AS1Q4G0G2 97 aa1.95□□□□□ -2.1
USP4-209ENST00000475873 Q8N9L7 120 aa1.95□□□□□ -2.1
USP4-209ENST00000475873 LINC00472Q9H8W2 130 aa1.95□□□□□ -2.1
USP4-209ENST00000475873 MUC5ACP98088 5654 aa1.94□□□□□ -2.1
USP4-209ENST00000475873 KRTAP5-4Q6L8H1 288 aa1.93□□□□□ -2.1
USP4-209ENST00000475873 PRO2289Q9P1D8 64 aa1.93□□□□□ -2.1
USP4-209ENST00000475873 KRTAP10-7P60409 375 aaPredicted RBP1.92□□□□□ -2.1
USP4-209ENST00000475873 MUC5BQ9HC84 5762 aaPredicted RBP1.91□□□□□ -2.1
USP4-209ENST00000475873 R4GN34 69 aa1.9□□□□□ -2.11
USP4-209ENST00000475873 KRTAP10-12P60413 245 aa1.88□□□□□ -2.11
USP4-209ENST00000475873 LINC00575Q6W349 94 aa1.88□□□□□ -2.11
USP4-209ENST00000475873 K7EQZ3 153 aa1.85□□□□□ -2.11
USP4-209ENST00000475873 KRTAP19-3Q7Z4W3 81 aa1.85□□□□□ -2.11
USP4-209ENST00000475873 KRTAP20-2Q3LI61 65 aa1.84□□□□□ -2.11
USP4-209ENST00000475873 KRTAP3-1Q9BYR8 98 aa1.83□□□□□ -2.12
USP4-209ENST00000475873 KRTAP19-7Q3SYF9 63 aa1.82□□□□□ -2.12
USP4-209ENST00000475873 MT1EP04732 61 aa1.81□□□□□ -2.12
USP4-209ENST00000475873 TP53AIP1Q9HCN2 124 aa1.81□□□□□ -2.12
USP4-209ENST00000475873 INE1O15225 51 aa1.8□□□□□ -2.12
USP4-209ENST00000475873 IGKV2-30P06310 120 aa1.8□□□□□ -2.12
USP4-209ENST00000475873 CRIPTQ9P021 101 aa1.8□□□□□ -2.12
USP4-209ENST00000475873 KRTAP5-8O75690 187 aa1.79□□□□□ -2.12
USP4-209ENST00000475873 KRTAP4-3Q9BYR4 195 aa1.78□□□□□ -2.12
USP4-209ENST00000475873 PLAC4Q8WY50 150 aa1.77□□□□□ -2.13
USP4-209ENST00000475873 S4R3F8 94 aa1.76□□□□□ -2.13
USP4-209ENST00000475873 IGKV2D-30A0A075B6S6 120 aa1.75□□□□□ -2.13
USP4-209ENST00000475873 H0YAA0 97 aa1.75□□□□□ -2.13
USP4-209ENST00000475873 MRPL34Q9BQ48 92 aaKnown RBP1.75□□□□□ -2.13
USP4-209ENST00000475873 MT1MQ8N339 61 aa1.74□□□□□ -2.13
USP4-209ENST00000475873 MMP24-AS1A0A0U1RRL7 71 aa1.73□□□□□ -2.13
USP4-209ENST00000475873 MT1GP13640 62 aa1.73□□□□□ -2.13
USP4-209ENST00000475873 KRTAP5-11Q6L8G4 156 aa1.72□□□□□ -2.13
USP4-209ENST00000475873 PP632Q6XCG6 107 aa1.72□□□□□ -2.13
USP4-209ENST00000475873 SYNE1Q8NF91 8797 aaKnown RBP1.72□□□□□ -2.13
USP4-209ENST00000475873 C10orf95Q9H7T3 257 aa1.7□□□□□ -2.14
USP4-209ENST00000475873 KRTAP5-2Q701N4 177 aa1.69□□□□□ -2.14
USP4-209ENST00000475873 OBSCNQ5VST9 7968 aa1.68□□□□□ -2.14
USP4-209ENST00000475873 KRTAP5-5Q701N2 237 aaPredicted RBP1.67□□□□□ -2.14
USP4-209ENST00000475873 MT1LQ93083 61 aa1.65□□□□□ -2.15
USP4-209ENST00000475873 KRTAP5-1Q6L8H4 278 aa1.64□□□□□ -2.15
USP4-209ENST00000475873 KRTAP12-4P60329 112 aa1.63□□□□□ -2.15
USP4-209ENST00000475873 KRTAP19-5Q3LI72 72 aa1.63□□□□□ -2.15
USP4-209ENST00000475873 KRTAP4-4Q9BYR3 166 aa1.6□□□□□ -2.15
USP4-209ENST00000475873 M0QZ58 72 aa1.57□□□□□ -2.16
USP4-209ENST00000475873 A0A0D9SG42 100 aa1.5□□□□□ -2.17
USP4-209ENST00000475873 LCE1EQ5T753 118 aa1.49□□□□□ -2.17
USP4-209ENST00000475873 KRTAP13-4Q3LI77 160 aa1.48□□□□□ -2.17
USP4-209ENST00000475873 KRTAP6-1Q3LI64 71 aa1.44□□□□□ -2.18
USP4-209ENST00000475873 KRTAP6-2Q3LI66 62 aa1.44□□□□□ -2.18
USP4-209ENST00000475873 KRTAP12-1P59990 96 aa1.43□□□□□ -2.18
USP4-209ENST00000475873 LCE3AQ5TA76 89 aa1.43□□□□□ -2.18
USP4-209ENST00000475873 MT1AP04731 61 aa1.38□□□□□ -2.19
USP4-209ENST00000475873 MT3P25713 68 aa1.35□□□□□ -2.19
USP4-209ENST00000475873 LCE1FQ5T754 118 aa1.33□□□□□ -2.2
USP4-209ENST00000475873 PHGR1C9JFL3 82 aa1.29□□□□□ -2.2
USP4-209ENST00000475873 KRTAP12-3P60328 96 aa1.28□□□□□ -2.2
USP4-209ENST00000475873 TNP1P09430 55 aa1.25□□□□□ -2.21
USP4-209ENST00000475873 LCE3CQ5T5A8 94 aa1.24□□□□□ -2.21
USP4-209ENST00000475873 LCE1BQ5T7P3 118 aa1.23□□□□□ -2.21
USP4-209ENST00000475873 KRTAP9-6A8MVA2 160 aa1.19□□□□□ -2.22
USP4-209ENST00000475873 LCE1CQ5T751 118 aa1.17□□□□□ -2.22
USP4-209ENST00000475873 LCE3EQ5T5B0 92 aa1.15□□□□□ -2.23
USP4-209ENST00000475873 LCE3DQ9BYE3 92 aa1.08□□□□□ -2.24
USP4-209ENST00000475873 MUC19Q7Z5P9 8384 aa1.07□□□□□ -2.24
USP4-209ENST00000475873 PRM1P04553 51 aa1□□□□□ -2.25
USP4-209ENST00000475873 KRTAP21-1Q3LI58 79 aa0.96□□□□□ -2.26
USP4-209ENST00000475873 KRTAP21-2Q3LI59 83 aa0.96□□□□□ -2.26
USP4-209ENST00000475873 MUC16Q8WXI7 14507 aa0.73□□□□□ -2.29
Retrieved 78 of 20,778 RNA–protein pairs in 9.7 ms