RNA–Protein interactions for RNA: ENST00000458530.1

VPS50-207, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 667 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-207ENST00000458530 KRTAP19-8Q3LI54 63 aa3.89□□□□□ -1.79
VPS50-207ENST00000458530 KTN1-AS1Q86SY8 53 aa3.89□□□□□ -1.79
VPS50-207ENST00000458530 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.84□□□□□ -1.79
VPS50-207ENST00000458530 KRTAP5-9P26371 169 aa3.8□□□□□ -1.8
VPS50-207ENST00000458530 MT1BP07438 61 aa3.78□□□□□ -1.8
VPS50-207ENST00000458530 KMT2DO14686 5537 aa3.77□□□□□ -1.81
VPS50-207ENST00000458530 PRO2289Q9P1D8 64 aa3.77□□□□□ -1.81
VPS50-207ENST00000458530 MDN1Q9NU22 5596 aa3.77□□□□□ -1.81
VPS50-207ENST00000458530 KRTAP25-1Q3LHN0 102 aa3.76□□□□□ -1.81
VPS50-207ENST00000458530 KRTAP2-3P0C7H8 128 aa3.74□□□□□ -1.81
VPS50-207ENST00000458530 LCE1EQ5T753 118 aa3.74□□□□□ -1.81
VPS50-207ENST00000458530 KRTAP2-4Q9BYR9 128 aa3.74□□□□□ -1.81
VPS50-207ENST00000458530 C10orf95Q9H7T3 257 aa3.74□□□□□ -1.81
VPS50-207ENST00000458530 TNP1P09430 55 aa3.73□□□□□ -1.81
VPS50-207ENST00000458530 PRAC1Q96KF2 57 aa3.71□□□□□ -1.82
VPS50-207ENST00000458530 MT3P25713 68 aa3.67□□□□□ -1.82
VPS50-207ENST00000458530 MT1XP80297 61 aa3.67□□□□□ -1.82
VPS50-207ENST00000458530 KRTAP10-5P60370 271 aa3.66□□□□□ -1.82
VPS50-207ENST00000458530 PP632Q6XCG6 107 aa3.66□□□□□ -1.82
VPS50-207ENST00000458530 A0A0A0MQY5 61 aa3.64□□□□□ -1.83
VPS50-207ENST00000458530 KRTAP2-1Q9BYU5 128 aa3.6□□□□□ -1.83
VPS50-207ENST00000458530 KRTAP10-12P60413 245 aa3.56□□□□□ -1.84
VPS50-207ENST00000458530 SPRR2EP22531 72 aa3.53□□□□□ -1.84
VPS50-207ENST00000458530 SPRR2BP35325 72 aa3.53□□□□□ -1.84
VPS50-207ENST00000458530 SPRR2AP35326 72 aa3.53□□□□□ -1.84
VPS50-207ENST00000458530 SPRR2FQ96RM1 72 aa3.5□□□□□ -1.85
VPS50-207ENST00000458530 LCE3AQ5TA76 89 aa3.49□□□□□ -1.85
VPS50-207ENST00000458530 LCE1FQ5T754 118 aa3.47□□□□□ -1.85
VPS50-207ENST00000458530 KRTAP8-1Q8IUC2 63 aa3.45□□□□□ -1.86
VPS50-207ENST00000458530 GPR98Q8WXG9 6306 aa3.42□□□□□ -1.86
VPS50-207ENST00000458530 SPRR2DP22532 72 aa3.42□□□□□ -1.86
VPS50-207ENST00000458530 KRTAP12-3P60328 96 aa3.38□□□□□ -1.87
VPS50-207ENST00000458530 KRTAP5-1Q6L8H4 278 aa3.38□□□□□ -1.87
VPS50-207ENST00000458530 KRTAP9-6A8MVA2 160 aa3.36□□□□□ -1.87
VPS50-207ENST00000458530 KRTAP19-5Q3LI72 72 aa3.32□□□□□ -1.88
VPS50-207ENST00000458530 LCE3CQ5T5A8 94 aa3.3□□□□□ -1.88
VPS50-207ENST00000458530 KRTAP19-7Q3SYF9 63 aa3.26□□□□□ -1.89
VPS50-207ENST00000458530 KRTAP4-4Q9BYR3 166 aa3.24□□□□□ -1.89
VPS50-207ENST00000458530 MT1EP04732 61 aa3.23□□□□□ -1.89
VPS50-207ENST00000458530 KRTAP5-4Q6L8H1 288 aa3.2□□□□□ -1.9
VPS50-207ENST00000458530 DSTQ03001 7570 aaKnown RBP3.2□□□□□ -1.9
VPS50-207ENST00000458530 LUZP6Q538Z0 58 aa3.17□□□□□ -1.9
VPS50-207ENST00000458530 MT1LQ93083 61 aa3.17□□□□□ -1.9
VPS50-207ENST00000458530 SPRR5A0A1B0GTR4 108 aa3.16□□□□□ -1.9
VPS50-207ENST00000458530 KRTAP5-10Q6L8G5 202 aa3.15□□□□□ -1.91
VPS50-207ENST00000458530 HMCN1Q96RW7 5635 aa3.15□□□□□ -1.91
VPS50-207ENST00000458530 KRTAP19-3Q7Z4W3 81 aa3.13□□□□□ -1.91
VPS50-207ENST00000458530 MT1GP13640 62 aa3.12□□□□□ -1.91
VPS50-207ENST00000458530 AHNAK2Q8IVF2 5795 aa3.1□□□□□ -1.91
VPS50-207ENST00000458530 KRTAP5-7Q6L8G8 165 aa3.07□□□□□ -1.92
VPS50-207ENST00000458530 MT1MQ8N339 61 aa3.04□□□□□ -1.92
VPS50-207ENST00000458530 LCE3EQ5T5B0 92 aa3.02□□□□□ -1.93
VPS50-207ENST00000458530 OBSCNQ5VST9 7968 aa3.02□□□□□ -1.93
VPS50-207ENST00000458530 NDUFAF8A1L188 74 aa3□□□□□ -1.93
VPS50-207ENST00000458530 MT4P47944 62 aa3□□□□□ -1.93
VPS50-207ENST00000458530 KRTAP4-3Q9BYR4 195 aa2.91□□□□□ -1.94
VPS50-207ENST00000458530 KRTAP20-2Q3LI61 65 aa2.79□□□□□ -1.96
VPS50-207ENST00000458530 KRTAP5-5Q701N2 237 aaPredicted RBP2.73□□□□□ -1.97
VPS50-207ENST00000458530 MT1AP04731 61 aa2.72□□□□□ -1.97
VPS50-207ENST00000458530 KRTAP5-2Q701N4 177 aa2.69□□□□□ -1.98
VPS50-207ENST00000458530 AHNAKQ09666 5890 aaKnown RBP2.67□□□□□ -1.98
VPS50-207ENST00000458530 MUC5ACP98088 5654 aa2.67□□□□□ -1.98
VPS50-207ENST00000458530 MUC5BQ9HC84 5762 aaPredicted RBP2.64□□□□□ -1.99
VPS50-207ENST00000458530 KRTAP6-1Q3LI64 71 aa2.64□□□□□ -1.99
VPS50-207ENST00000458530 KRTAP12-4P60329 112 aa2.62□□□□□ -1.99
VPS50-207ENST00000458530 KRTAP5-8O75690 187 aa2.58□□□□□ -2
VPS50-207ENST00000458530 INE1O15225 51 aa2.55□□□□□ -2
VPS50-207ENST00000458530 SYNE1Q8NF91 8797 aaKnown RBP2.54□□□□□ -2
VPS50-207ENST00000458530 KRTAP6-2Q3LI66 62 aa2.45□□□□□ -2.02
VPS50-207ENST00000458530 LCE1CQ5T751 118 aa2.45□□□□□ -2.02
VPS50-207ENST00000458530 LCE1BQ5T7P3 118 aa2.45□□□□□ -2.02
VPS50-207ENST00000458530 LCE3DQ9BYE3 92 aa2.4□□□□□ -2.03
VPS50-207ENST00000458530 MUC19Q7Z5P9 8384 aa2.09□□□□□ -2.07
VPS50-207ENST00000458530 PRM1P04553 51 aa2□□□□□ -2.09
VPS50-207ENST00000458530 PHGR1C9JFL3 82 aa1.79□□□□□ -2.12
VPS50-207ENST00000458530 KRTAP21-2Q3LI59 83 aa1.79□□□□□ -2.12
VPS50-207ENST00000458530 KRTAP21-1Q3LI58 79 aa1.38□□□□□ -2.19
VPS50-207ENST00000458530 MUC16Q8WXI7 14507 aa1.06□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 52.3 ms