RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 FANCD2Q9BXW9 1451 aa-2.03□□□□□ -2.73
USP40-209ENST00000452724 NDUFA1O15239 70 aa-2.05□□□□□ -2.74
USP40-209ENST00000452724 MT1FP04733 61 aa-2.06□□□□□ -2.74
USP40-209ENST00000452724 NRXN3Q9Y4C0 1643 aa-2.06□□□□□ -2.74
USP40-209ENST00000452724 NFAT5O94916 1531 aa-2.07□□□□□ -2.74
USP40-209ENST00000452724 CLTCL1P53675 1640 aa-2.09□□□□□ -2.74
USP40-209ENST00000452724 IQGAP1P46940 1657 aa-2.1□□□□□ -2.75
USP40-209ENST00000452724 DDX60Q8IY21 1712 aaKnown RBP-2.11□□□□□ -2.75
USP40-209ENST00000452724 KRTAP19-6Q3LI70 58 aa-2.11□□□□□ -2.75
USP40-209ENST00000452724 CEP250Q9BV73 2442 aa-2.12□□□□□ -2.75
USP40-209ENST00000452724 FRYLO94915 3013 aa-2.12□□□□□ -2.75
USP40-209ENST00000452724 WDFY3Q8IZQ1 3526 aa-2.14□□□□□ -2.75
USP40-209ENST00000452724 SPEGQ15772 3267 aa-2.15□□□□□ -2.75
USP40-209ENST00000452724 PCNTO95613 3336 aa-2.17□□□□□ -2.76
USP40-209ENST00000452724 DMDP11532 3685 aa-2.19□□□□□ -2.76
USP40-209ENST00000452724 ERICH3Q5RHP9 1530 aa-2.22□□□□□ -2.77
USP40-209ENST00000452724 LINC01590Q5TEZ4 76 aa-2.23□□□□□ -2.77
USP40-209ENST00000452724 TOMM7Q9P0U1 55 aa-2.23□□□□□ -2.77
USP40-209ENST00000452724 CEP350Q5VT06 3117 aa-2.24□□□□□ -2.77
USP40-209ENST00000452724 SNRPGP15A8MWD9 76 aa-2.26□□□□□ -2.77
USP40-209ENST00000452724 CENPEQ02224 2701 aa-2.27□□□□□ -2.77
USP40-209ENST00000452724 SZT2Q5T011 3432 aa-2.29□□□□□ -2.78
USP40-209ENST00000452724 RHPN1-AS1Q9BWJ2 59 aa-2.29□□□□□ -2.78
USP40-209ENST00000452724 SAMD9LQ8IVG5 1584 aa-2.38□□□□□ -2.79
USP40-209ENST00000452724 DEFB133Q30KQ1 61 aa-2.39□□□□□ -2.79
USP40-209ENST00000452724 WDFY4Q6ZS81 3184 aa-2.39□□□□□ -2.79
USP40-209ENST00000452724 EP400Q96L91 3159 aa-2.4□□□□□ -2.79
USP40-209ENST00000452724 MUC3AQ02505 3323 aa-2.42□□□□□ -2.8
USP40-209ENST00000452724 RPL39P62891 51 aaKnown RBP-2.44□□□□□ -2.8
USP40-209ENST00000452724 TTTY10Q9BZA0 68 aa-2.44□□□□□ -2.8
USP40-209ENST00000452724 DUOX1Q9NRD9 1551 aa-2.46□□□□□ -2.8
USP40-209ENST00000452724 DCHS1Q96JQ0 3298 aa-2.48□□□□□ -2.81
USP40-209ENST00000452724 DNAH12Q6ZR08 3092 aa-2.49□□□□□ -2.81
USP40-209ENST00000452724 A0A096LNI7 61 aa-2.49□□□□□ -2.81
USP40-209ENST00000452724 DNAH14Q0VDD8 3507 aa-2.5□□□□□ -2.81
USP40-209ENST00000452724 CD52P31358 61 aa-2.51□□□□□ -2.81
USP40-209ENST00000452724 HTN1P15515 57 aa-2.52□□□□□ -2.81
USP40-209ENST00000452724 TOMM5Q8N4H5 51 aa-2.52□□□□□ -2.81
USP40-209ENST00000452724 IQGAP2Q13576 1575 aa-2.55□□□□□ -2.82
USP40-209ENST00000452724 CFAP47Q6ZTR5 3102 aa-2.55□□□□□ -2.82
USP40-209ENST00000452724 MKI67P46013 3256 aaKnown RBP-2.56□□□□□ -2.82
USP40-209ENST00000452724 DEFB124Q8NES8 71 aa-2.56□□□□□ -2.82
USP40-209ENST00000452724 RPL39LQ96EH5 51 aaKnown RBP-2.56□□□□□ -2.82
USP40-209ENST00000452724 ATP7AQ04656 1500 aa-2.57□□□□□ -2.82
USP40-209ENST00000452724 TOP2AP11388 1531 aaKnown RBP-2.59□□□□□ -2.82
USP40-209ENST00000452724 USP34Q70CQ2 3546 aa-2.6□□□□□ -2.83
USP40-209ENST00000452724 UNC80Q8N2C7 3258 aa-2.62□□□□□ -2.83
USP40-209ENST00000452724 XIRP2A4UGR9 3374 aa-2.64□□□□□ -2.83
USP40-209ENST00000452724 MROH2BQ7Z745 1585 aa-2.69□□□□□ -2.84
USP40-209ENST00000452724 LOC400499M0QZD8 3231 aa-2.7□□□□□ -2.84
USP40-209ENST00000452724 KRTAP19-2Q3LHN2 52 aa-2.71□□□□□ -2.84
USP40-209ENST00000452724 DEFB104AQ8WTQ1 72 aa-2.77□□□□□ -2.85
USP40-209ENST00000452724 H3BUX3 64 aa-2.78□□□□□ -2.85
USP40-209ENST00000452724 ASPMQ8IZT6 3477 aa-2.82□□□□□ -2.86
USP40-209ENST00000452724 VCANP13611 3396 aa-2.85□□□□□ -2.87
USP40-209ENST00000452724 CENPFP49454 3210 aa-2.85□□□□□ -2.87
USP40-209ENST00000452724 BRCA2P51587 3418 aa-2.87□□□□□ -2.87
USP40-209ENST00000452724 CDH23Q9H251 3354 aa-2.89□□□□□ -2.87
USP40-209ENST00000452724 K7EIM0 57 aa-2.9□□□□□ -2.87
USP40-209ENST00000452724 LINC01556Q5JQF7 62 aa-2.93□□□□□ -2.88
USP40-209ENST00000452724 VPS13AQ96RL7 3174 aa-3.02□□□□□ -2.89
USP40-209ENST00000452724 ARHGAP5-AS1Q96IT6 56 aa-3.05□□□□□ -2.9
USP40-209ENST00000452724 SNRPGP62308 76 aaKnown RBP-3.09□□□□□ -2.9
USP40-209ENST00000452724 PRCDQ00LT1 54 aa-3.12□□□□□ -2.91
USP40-209ENST00000452724 GCC2Q8IWJ2 1684 aa-3.25□□□□□ -2.93
USP40-209ENST00000452724 APELAP0DMC3 54 aa-3.27□□□□□ -2.93
USP40-209ENST00000452724 TMEM167AQ8TBQ9 72 aa-3.27□□□□□ -2.93
USP40-209ENST00000452724 A0A096LPF7 62 aa-3.28□□□□□ -2.93
USP40-209ENST00000452724 UTRNP46939 3433 aa-3.31□□□□□ -2.94
USP40-209ENST00000452724 RPL39P5Q59GN2 51 aa-3.47□□□□□ -2.96
USP40-209ENST00000452724 Q9Y3F1 56 aa-3.51□□□□□ -2.97
USP40-209ENST00000452724 HTN3P15516 51 aa-3.54□□□□□ -2.98
USP40-209ENST00000452724 DEFB108AA8MXU0 73 aa-3.56□□□□□ -2.98
USP40-209ENST00000452724 H3BSH0 61 aa-3.56□□□□□ -2.98
USP40-209ENST00000452724 GOLGB1Q14789 3259 aaKnown RBP-3.71□□□□□ -3
USP40-209ENST00000452724 COX14Q96I36 57 aa-3.86□□□□□ -3.03
USP40-209ENST00000452724 DEFB108BQ8NET1 73 aa-4.02□□□□□ -3.05
USP40-209ENST00000452724 STATHP02808 62 aa-4.61□□□□□ -3.15
Retrieved 78 of 20,778 RNA–protein pairs in 87.9 ms