RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 KRTAP12-3P60328 96 aa1.11□□□□□ -2.23
MCF2-204ENST00000414978 PCOTHQ58A44 107 aa1.11□□□□□ -2.23
MCF2-204ENST00000414978 C9orf92A6NGG3 77 aa1.11□□□□□ -2.23
MCF2-204ENST00000414978 CYP4F30PQ9H0H9 118 aa1.1□□□□□ -2.23
MCF2-204ENST00000414978 KRTAP9-6A8MVA2 160 aa1.09□□□□□ -2.23
MCF2-204ENST00000414978 SYNE2Q8WXH0 6885 aaKnown RBP1.09□□□□□ -2.24
MCF2-204ENST00000414978 DMAC1Q96GE9 116 aa1.08□□□□□ -2.24
MCF2-204ENST00000414978 ACYP2P14621 99 aa1.08□□□□□ -2.24
MCF2-204ENST00000414978 CHKB-CPT1BH3BT56 60 aa1.07□□□□□ -2.24
MCF2-204ENST00000414978 SPINK7P58062 85 aa1.07□□□□□ -2.24
MCF2-204ENST00000414978 RPL37P61927 97 aaKnown RBP1.07□□□□□ -2.24
MCF2-204ENST00000414978 LCE3AQ5TA76 89 aa1.07□□□□□ -2.24
MCF2-204ENST00000414978 MT2AP02795 61 aa1.06□□□□□ -2.24
MCF2-204ENST00000414978 MACF1Q9UPN3 7388 aaKnown RBP1.05□□□□□ -2.24
MCF2-204ENST00000414978 KRTAP5-4Q6L8H1 288 aa1.05□□□□□ -2.24
MCF2-204ENST00000414978 KRTAP5-11Q6L8G4 156 aa1.04□□□□□ -2.24
MCF2-204ENST00000414978 COX6B2Q6YFQ2 88 aa1.04□□□□□ -2.24
MCF2-204ENST00000414978 KRTAP5-5Q701N2 237 aaPredicted RBP1.04□□□□□ -2.24
MCF2-204ENST00000414978 PRR15LQ9BU68 103 aa1.04□□□□□ -2.24
MCF2-204ENST00000414978 LINC01558Q9Y6Z2 57 aa1.04□□□□□ -2.24
MCF2-204ENST00000414978 MT1FP04733 61 aa1.03□□□□□ -2.24
MCF2-204ENST00000414978 A0A1B0GU69 56 aa1.03□□□□□ -2.25
MCF2-204ENST00000414978 INE1O15225 51 aa1.03□□□□□ -2.25
MCF2-204ENST00000414978 KRTAP5-10Q6L8G5 202 aa1.02□□□□□ -2.25
MCF2-204ENST00000414978 M0R2T5 61 aa1.02□□□□□ -2.25
MCF2-204ENST00000414978 H1FX-AS1Q4G0G2 97 aa1.02□□□□□ -2.25
MCF2-204ENST00000414978 S4R3F8 94 aa1.02□□□□□ -2.25
MCF2-204ENST00000414978 PLAC4Q8WY50 150 aa1□□□□□ -2.25
MCF2-204ENST00000414978 FSIP2Q5CZC0 6907 aa1□□□□□ -2.25
MCF2-204ENST00000414978 UQCR11O14957 56 aa1□□□□□ -2.25
MCF2-204ENST00000414978 KMT2DO14686 5537 aa0.99□□□□□ -2.25
MCF2-204ENST00000414978 KRTAP5-8O75690 187 aa0.99□□□□□ -2.25
MCF2-204ENST00000414978 SPRR2EP22531 72 aa0.97□□□□□ -2.25
MCF2-204ENST00000414978 SPRR2BP35325 72 aa0.97□□□□□ -2.25
MCF2-204ENST00000414978 SPRR2AP35326 72 aa0.97□□□□□ -2.25
MCF2-204ENST00000414978 KRTAP12-4P60329 112 aa0.97□□□□□ -2.25
MCF2-204ENST00000414978 SPATA8Q6RVD6 105 aa0.97□□□□□ -2.25
MCF2-204ENST00000414978 H0YAA0 97 aa0.96□□□□□ -2.26
MCF2-204ENST00000414978 KRTAP5-1Q6L8H4 278 aa0.96□□□□□ -2.26
MCF2-204ENST00000414978 MUC19Q7Z5P9 8384 aa0.96□□□□□ -2.26
MCF2-204ENST00000414978 SPRR2DP22532 72 aa0.96□□□□□ -2.26
MCF2-204ENST00000414978 KRTAP19-8Q3LI54 63 aa0.95□□□□□ -2.26
MCF2-204ENST00000414978 MUC5ACP98088 5654 aa0.95□□□□□ -2.26
MCF2-204ENST00000414978 A0A0D9SG42 100 aa0.95□□□□□ -2.26
MCF2-204ENST00000414978 M0QZ58 72 aa0.95□□□□□ -2.26
MCF2-204ENST00000414978 MDN1Q9NU22 5596 aa0.94□□□□□ -2.26
MCF2-204ENST00000414978 MUC12Q9UKN1 5478 aa0.94□□□□□ -2.26
MCF2-204ENST00000414978 MT1BP07438 61 aa0.93□□□□□ -2.26
MCF2-204ENST00000414978 CRIPTQ9P021 101 aa0.92□□□□□ -2.26
MCF2-204ENST00000414978 C10orf95Q9H7T3 257 aa0.91□□□□□ -2.26
MCF2-204ENST00000414978 SPRR2FQ96RM1 72 aa0.9□□□□□ -2.27
MCF2-204ENST00000414978 SPRR2GQ9BYE4 73 aa0.89□□□□□ -2.27
MCF2-204ENST00000414978 KRTAP8-1Q8IUC2 63 aa0.86□□□□□ -2.27
MCF2-204ENST00000414978 TNP1P09430 55 aa0.85□□□□□ -2.27
MCF2-204ENST00000414978 KRTAP4-3Q9BYR4 195 aa0.84□□□□□ -2.27
MCF2-204ENST00000414978 DSTQ03001 7570 aaKnown RBP0.84□□□□□ -2.28
MCF2-204ENST00000414978 MT1XP80297 61 aa0.82□□□□□ -2.28
MCF2-204ENST00000414978 LCE1CQ5T751 118 aa0.79□□□□□ -2.28
MCF2-204ENST00000414978 LCE1BQ5T7P3 118 aa0.79□□□□□ -2.28
MCF2-204ENST00000414978 KRTAP20-2Q3LI61 65 aa0.79□□□□□ -2.28
MCF2-204ENST00000414978 KRTAP19-3Q7Z4W3 81 aa0.78□□□□□ -2.29
MCF2-204ENST00000414978 MT4P47944 62 aa0.77□□□□□ -2.29
MCF2-204ENST00000414978 SYNE1Q8NF91 8797 aaKnown RBP0.75□□□□□ -2.29
MCF2-204ENST00000414978 KRTAP19-5Q3LI72 72 aa0.75□□□□□ -2.29
MCF2-204ENST00000414978 MT1GP13640 62 aa0.75□□□□□ -2.29
MCF2-204ENST00000414978 MT1EP04732 61 aa0.74□□□□□ -2.29
MCF2-204ENST00000414978 KRTAP19-7Q3SYF9 63 aa0.72□□□□□ -2.29
MCF2-204ENST00000414978 MT1MQ8N339 61 aa0.72□□□□□ -2.29
MCF2-204ENST00000414978 MT1LQ93083 61 aa0.7□□□□□ -2.3
MCF2-204ENST00000414978 PHGR1C9JFL3 82 aa0.67□□□□□ -2.3
MCF2-204ENST00000414978 KRTAP21-1Q3LI58 79 aa0.66□□□□□ -2.3
MCF2-204ENST00000414978 MT1AP04731 61 aa0.6□□□□□ -2.31
MCF2-204ENST00000414978 KRTAP6-1Q3LI64 71 aa0.59□□□□□ -2.31
MCF2-204ENST00000414978 KRTAP21-2Q3LI59 83 aa0.55□□□□□ -2.32
MCF2-204ENST00000414978 KRTAP6-2Q3LI66 62 aa0.55□□□□□ -2.32
MCF2-204ENST00000414978 MUC16Q8WXI7 14507 aa0.51□□□□□ -2.33
MCF2-204ENST00000414978 PRM1P04553 51 aa0.47□□□□□ -2.33
Retrieved 77 of 20,778 RNA–protein pairs in 6.8 ms