RNA–Protein interactions for RNA: ENST00000397204.8

CAPN3-208, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,237 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-208ENST00000397204 MT1XP80297 61 aa3.66□□□□□ -1.82
CAPN3-208ENST00000397204 PLAC4Q8WY50 150 aa3.65□□□□□ -1.83
CAPN3-208ENST00000397204 KRTAP12-2P59991 146 aa3.64□□□□□ -1.83
CAPN3-208ENST00000397204 SPRR2DP22532 72 aa3.62□□□□□ -1.83
CAPN3-208ENST00000397204 MIR22HGQ0VDD5 57 aa3.61□□□□□ -1.83
CAPN3-208ENST00000397204 KRTAP9-6A8MVA2 160 aa3.59□□□□□ -1.83
CAPN3-208ENST00000397204 LCE3CQ5T5A8 94 aa3.59□□□□□ -1.83
CAPN3-208ENST00000397204 PRR15LQ9BU68 103 aa3.59□□□□□ -1.83
CAPN3-208ENST00000397204 P0C880 135 aa3.58□□□□□ -1.84
CAPN3-208ENST00000397204 R4GN34 69 aa3.56□□□□□ -1.84
CAPN3-208ENST00000397204 H3BPC8 53 aa3.55□□□□□ -1.84
CAPN3-208ENST00000397204 NDUFAF8A1L188 74 aa3.54□□□□□ -1.84
CAPN3-208ENST00000397204 H0Y9P7 68 aa3.52□□□□□ -1.85
CAPN3-208ENST00000397204 M0QZ58 72 aa3.5□□□□□ -1.85
CAPN3-208ENST00000397204 LINC01558Q9Y6Z2 57 aa3.5□□□□□ -1.85
CAPN3-208ENST00000397204 KRTAP5-1Q6L8H4 278 aa3.48□□□□□ -1.85
CAPN3-208ENST00000397204 KRTAP25-1Q3LHN0 102 aa3.46□□□□□ -1.86
CAPN3-208ENST00000397204 LINC00208Q96KT6 92 aa3.46□□□□□ -1.86
CAPN3-208ENST00000397204 SPANXA2-OT1Q8N9U9 137 aa3.45□□□□□ -1.86
CAPN3-208ENST00000397204 DMAC1Q96GE9 116 aa3.45□□□□□ -1.86
CAPN3-208ENST00000397204 GPR98Q8WXG9 6306 aa3.44□□□□□ -1.86
CAPN3-208ENST00000397204 A0A1B0GU33 70 aa3.38□□□□□ -1.87
CAPN3-208ENST00000397204 DSTQ03001 7570 aaKnown RBP3.38□□□□□ -1.87
CAPN3-208ENST00000397204 SPATA8Q6RVD6 105 aa3.37□□□□□ -1.87
CAPN3-208ENST00000397204 UQCR11O14957 56 aa3.36□□□□□ -1.87
CAPN3-208ENST00000397204 KRTAP4-4Q9BYR3 166 aa3.32□□□□□ -1.88
CAPN3-208ENST00000397204 COA5Q86WW8 74 aa3.31□□□□□ -1.88
CAPN3-208ENST00000397204 ACYP2P14621 99 aa3.29□□□□□ -1.88
CAPN3-208ENST00000397204 KRTAP5-4Q6L8H1 288 aa3.29□□□□□ -1.88
CAPN3-208ENST00000397204 LCE3EQ5T5B0 92 aa3.28□□□□□ -1.88
CAPN3-208ENST00000397204 KRTAP19-3Q7Z4W3 81 aa3.28□□□□□ -1.88
CAPN3-208ENST00000397204 KRTAP19-7Q3SYF9 63 aa3.27□□□□□ -1.89
CAPN3-208ENST00000397204 HMCN1Q96RW7 5635 aa3.26□□□□□ -1.89
CAPN3-208ENST00000397204 MT1EP04732 61 aa3.26□□□□□ -1.89
CAPN3-208ENST00000397204 SPINT4Q6UDR6 99 aa3.26□□□□□ -1.89
CAPN3-208ENST00000397204 MT1GP13640 62 aa3.21□□□□□ -1.9
CAPN3-208ENST00000397204 A0A1B0GU69 56 aa3.19□□□□□ -1.9
CAPN3-208ENST00000397204 PP632Q6XCG6 107 aa3.18□□□□□ -1.9
CAPN3-208ENST00000397204 AHNAK2Q8IVF2 5795 aa3.18□□□□□ -1.9
CAPN3-208ENST00000397204 MT4P47944 62 aa3.17□□□□□ -1.9
CAPN3-208ENST00000397204 KRTAP13-4Q3LI77 160 aa3.17□□□□□ -1.9
CAPN3-208ENST00000397204 A0A0D9SG42 100 aa3.15□□□□□ -1.91
CAPN3-208ENST00000397204 KRTAP19-5Q3LI72 72 aa3.14□□□□□ -1.91
CAPN3-208ENST00000397204 KRTAP5-10Q6L8G5 202 aa3.12□□□□□ -1.91
CAPN3-208ENST00000397204 MT1MQ8N339 61 aa3.12□□□□□ -1.91
CAPN3-208ENST00000397204 MT1LQ93083 61 aa3.08□□□□□ -1.92
CAPN3-208ENST00000397204 LCE3AQ5TA76 89 aa3.07□□□□□ -1.92
CAPN3-208ENST00000397204 KRTAP5-7Q6L8G8 165 aa3.04□□□□□ -1.92
CAPN3-208ENST00000397204 KRTAP4-3Q9BYR4 195 aa3.03□□□□□ -1.92
CAPN3-208ENST00000397204 KRTAP12-1P59990 96 aa3.01□□□□□ -1.93
CAPN3-208ENST00000397204 INE1O15225 51 aa2.98□□□□□ -1.93
CAPN3-208ENST00000397204 C10orf95Q9H7T3 257 aa2.98□□□□□ -1.93
CAPN3-208ENST00000397204 OBSCNQ5VST9 7968 aa2.97□□□□□ -1.93
CAPN3-208ENST00000397204 TNP1P09430 55 aa2.95□□□□□ -1.94
CAPN3-208ENST00000397204 SPRR5A0A1B0GTR4 108 aa2.93□□□□□ -1.94
CAPN3-208ENST00000397204 KRTAP20-2Q3LI61 65 aa2.93□□□□□ -1.94
CAPN3-208ENST00000397204 KRTAP12-4P60329 112 aa2.89□□□□□ -1.95
CAPN3-208ENST00000397204 KRTAP5-5Q701N2 237 aaPredicted RBP2.88□□□□□ -1.95
CAPN3-208ENST00000397204 KRTAP12-3P60328 96 aa2.87□□□□□ -1.95
CAPN3-208ENST00000397204 SYNE1Q8NF91 8797 aaKnown RBP2.78□□□□□ -1.96
CAPN3-208ENST00000397204 AHNAKQ09666 5890 aaKnown RBP2.69□□□□□ -1.98
CAPN3-208ENST00000397204 KRTAP5-2Q701N4 177 aa2.69□□□□□ -1.98
CAPN3-208ENST00000397204 MUC5BQ9HC84 5762 aaPredicted RBP2.68□□□□□ -1.98
CAPN3-208ENST00000397204 MUC5ACP98088 5654 aa2.68□□□□□ -1.98
CAPN3-208ENST00000397204 KRTAP5-8O75690 187 aa2.65□□□□□ -1.99
CAPN3-208ENST00000397204 LCE3DQ9BYE3 92 aa2.65□□□□□ -1.99
CAPN3-208ENST00000397204 LCE1CQ5T751 118 aa2.64□□□□□ -1.99
CAPN3-208ENST00000397204 LCE1BQ5T7P3 118 aa2.64□□□□□ -1.99
CAPN3-208ENST00000397204 MT1AP04731 61 aa2.62□□□□□ -1.99
CAPN3-208ENST00000397204 KRTAP6-1Q3LI64 71 aa2.61□□□□□ -1.99
CAPN3-208ENST00000397204 KRTAP6-2Q3LI66 62 aa2.54□□□□□ -2
CAPN3-208ENST00000397204 MUC19Q7Z5P9 8384 aa2.1□□□□□ -2.07
CAPN3-208ENST00000397204 KRTAP21-2Q3LI59 83 aa1.9□□□□□ -2.11
CAPN3-208ENST00000397204 PHGR1C9JFL3 82 aa1.82□□□□□ -2.12
CAPN3-208ENST00000397204 PRM1P04553 51 aa1.59□□□□□ -2.15
CAPN3-208ENST00000397204 KRTAP21-1Q3LI58 79 aa1.41□□□□□ -2.18
CAPN3-208ENST00000397204 MUC16Q8WXI7 14507 aa1.1□□□□□ -2.23
Retrieved 77 of 20,778 RNA–protein pairs in 43.8 ms