RNA–Protein interactions for RNA: ENST00000622226.1

PDLIM2-220, Transcript of PDZ and LIM domain 2, humanhuman

Gene PDLIM2, Length 6,559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-220ENST00000622226 OTOGQ6ZRI0 2925 aa6.59□□□□□ -1.35
PDLIM2-220ENST00000622226 ALMS1Q8TCU4 4167 aa6.5□□□□□ -1.37
PDLIM2-220ENST00000622226 KRTAP8-1Q8IUC2 63 aa6.39□□□□□ -1.39
PDLIM2-220ENST00000622226 KRTAP23-1A1A580 65 aa6.38□□□□□ -1.39
PDLIM2-220ENST00000622226 AKAP9Q99996 3911 aa6.36□□□□□ -1.39
PDLIM2-220ENST00000622226 ZNF469Q96JG9 3925 aaPredicted RBP6.29□□□□□ -1.4
PDLIM2-220ENST00000622226 KRTAP10-4P60372 401 aaPredicted RBP6.17□□□□□ -1.42
PDLIM2-220ENST00000622226 DNAH9Q9NYC9 4486 aa6.12□□□□□ -1.43
PDLIM2-220ENST00000622226 SPRR2FQ96RM1 72 aa6.1□□□□□ -1.43
PDLIM2-220ENST00000622226 MT1HP80294 61 aa6.03□□□□□ -1.44
PDLIM2-220ENST00000622226 KRTAP4-1Q9BYQ7 146 aa6□□□□□ -1.45
PDLIM2-220ENST00000622226 DNAH1Q9P2D7 4330 aa5.96□□□□□ -1.46
PDLIM2-220ENST00000622226 SPRR2EP22531 72 aa5.87□□□□□ -1.47
PDLIM2-220ENST00000622226 SPRR2BP35325 72 aa5.87□□□□□ -1.47
PDLIM2-220ENST00000622226 SPRR2AP35326 72 aa5.87□□□□□ -1.47
PDLIM2-220ENST00000622226 KRTAP19-5Q3LI72 72 aa5.85□□□□□ -1.47
PDLIM2-220ENST00000622226 KRTAP10-7P60409 375 aaPredicted RBP5.82□□□□□ -1.48
PDLIM2-220ENST00000622226 DNAH10Q8IVF4 4471 aa5.81□□□□□ -1.48
PDLIM2-220ENST00000622226 KMT2AQ03164 3969 aa5.81□□□□□ -1.48
PDLIM2-220ENST00000622226 LCE3CQ5T5A8 94 aa5.8□□□□□ -1.48
PDLIM2-220ENST00000622226 DNAH5Q8TE73 4624 aa5.8□□□□□ -1.48
PDLIM2-220ENST00000622226 VPS13BQ7Z7G8 4022 aa5.78□□□□□ -1.48
PDLIM2-220ENST00000622226 MT2AP02795 61 aa5.77□□□□□ -1.48
PDLIM2-220ENST00000622226 FAT2Q9NYQ8 4349 aa5.77□□□□□ -1.49
PDLIM2-220ENST00000622226 ANK2Q01484 3957 aa5.76□□□□□ -1.49
PDLIM2-220ENST00000622226 KRTAP17-1Q9BYP8 105 aa5.76□□□□□ -1.49
PDLIM2-220ENST00000622226 DNAH2Q9P225 4427 aa5.75□□□□□ -1.49
PDLIM2-220ENST00000622226 PLECQ15149 4684 aaKnown RBP5.73□□□□□ -1.49
PDLIM2-220ENST00000622226 FRAS1Q86XX4 4008 aa5.72□□□□□ -1.49
PDLIM2-220ENST00000622226 MT1FP04733 61 aa5.71□□□□□ -1.49
PDLIM2-220ENST00000622226 DNAH3Q8TD57 4116 aa5.69□□□□□ -1.5
PDLIM2-220ENST00000622226 SPRR2DP22532 72 aa5.65□□□□□ -1.5
PDLIM2-220ENST00000622226 LCE3BQ5TA77 95 aa5.64□□□□□ -1.51
PDLIM2-220ENST00000622226 PRKDCP78527 4128 aaKnown RBP5.64□□□□□ -1.51
PDLIM2-220ENST00000622226 CMYA5Q8N3K9 4069 aa5.63□□□□□ -1.51
PDLIM2-220ENST00000622226 SPRR2GQ9BYE4 73 aa5.63□□□□□ -1.51
PDLIM2-220ENST00000622226 STARD9Q9P2P6 4700 aa5.63□□□□□ -1.51
PDLIM2-220ENST00000622226 LYSTQ99698 3801 aa5.62□□□□□ -1.51
PDLIM2-220ENST00000622226 DNAH11Q96DT5 4516 aa5.62□□□□□ -1.51
PDLIM2-220ENST00000622226 LRP1BQ9NZR2 4599 aa5.61□□□□□ -1.51
PDLIM2-220ENST00000622226 FAT1Q14517 4588 aa5.6□□□□□ -1.51
PDLIM2-220ENST00000622226 KRTAP12-4P60329 112 aa5.59□□□□□ -1.51
PDLIM2-220ENST00000622226 DNHD1Q96M86 4753 aa5.58□□□□□ -1.52
PDLIM2-220ENST00000622226 DNAH17Q9UFH2 4485 aa5.55□□□□□ -1.52
PDLIM2-220ENST00000622226 DNAH8Q96JB1 4490 aa5.53□□□□□ -1.52
PDLIM2-220ENST00000622226 DNAH7Q8WXX0 4024 aa5.52□□□□□ -1.53
PDLIM2-220ENST00000622226 VPS13DQ5THJ4 4388 aa5.49□□□□□ -1.53
PDLIM2-220ENST00000622226 SACSQ9NZJ4 4579 aa5.48□□□□□ -1.53
PDLIM2-220ENST00000622226 DNAH6Q9C0G6 4158 aa5.48□□□□□ -1.53
PDLIM2-220ENST00000622226 DYNC2H1Q8NCM8 4307 aaKnown RBP5.46□□□□□ -1.53
PDLIM2-220ENST00000622226 LCE2BO14633 110 aa5.44□□□□□ -1.54
PDLIM2-220ENST00000622226 SPRR5A0A1B0GTR4 108 aa5.42□□□□□ -1.54
PDLIM2-220ENST00000622226 MT1GP13640 62 aa5.42□□□□□ -1.54
PDLIM2-220ENST00000622226 DYNC1H1Q14204 4646 aaKnown RBP5.41□□□□□ -1.54
PDLIM2-220ENST00000622226 RYR1P21817 5038 aa5.36□□□□□ -1.55
PDLIM2-220ENST00000622226 KRTAP19-1Q8IUB9 90 aa5.34□□□□□ -1.55
PDLIM2-220ENST00000622226 MT4P47944 62 aa5.26□□□□□ -1.57
PDLIM2-220ENST00000622226 LPAP08519 4548 aa5.26□□□□□ -1.57
PDLIM2-220ENST00000622226 LCE3DQ9BYE3 92 aa5.26□□□□□ -1.57
PDLIM2-220ENST00000622226 KRTAP4-8A0A0G2JLE6 195 aa5.25□□□□□ -1.57
PDLIM2-220ENST00000622226 KRTAP4-8Q9BYQ9 185 aa5.25□□□□□ -1.57
PDLIM2-220ENST00000622226 KRTAP9-2Q9BYQ4 174 aa5.22□□□□□ -1.57
PDLIM2-220ENST00000622226 KRTAP19-4Q3LI73 84 aa5.21□□□□□ -1.58
PDLIM2-220ENST00000622226 APOBP04114 4563 aaKnown RBP5.19□□□□□ -1.58
PDLIM2-220ENST00000622226 LCE2CQ5TA81 110 aa5.19□□□□□ -1.58
PDLIM2-220ENST00000622226 LCE2DQ5TA82 110 aaPredicted RBP5.18□□□□□ -1.58
PDLIM2-220ENST00000622226 FAT3Q8TDW7 4589 aa5.17□□□□□ -1.58
PDLIM2-220ENST00000622226 HSPG2P98160 4391 aa5.16□□□□□ -1.58
PDLIM2-220ENST00000622226 LCE3EQ5T5B0 92 aa5.16□□□□□ -1.58
PDLIM2-220ENST00000622226 MT1XP80297 61 aa5.15□□□□□ -1.58
PDLIM2-220ENST00000622226 RYR3Q15413 4870 aa5.09□□□□□ -1.59
PDLIM2-220ENST00000622226 PKHD1L1Q86WI1 4243 aa5.09□□□□□ -1.6
PDLIM2-220ENST00000622226 PKHD1P08F94 4074 aa5.08□□□□□ -1.6
PDLIM2-220ENST00000622226 HECTD4Q9Y4D8 3996 aa5.07□□□□□ -1.6
PDLIM2-220ENST00000622226 KRTAP19-8Q3LI54 63 aa5.07□□□□□ -1.6
PDLIM2-220ENST00000622226 LRP1Q07954 4544 aaKnown RBP5.04□□□□□ -1.6
PDLIM2-220ENST00000622226 KRTAP9-6A0A140TA67 174 aa5.03□□□□□ -1.6
PDLIM2-220ENST00000622226 KRTAP4-7Q9BYR0 210 aa5.02□□□□□ -1.61
PDLIM2-220ENST00000622226 MYCBP2O75592 4640 aa4.99□□□□□ -1.61
PDLIM2-220ENST00000622226 KRTAP9-8Q9BYQ0 159 aa4.99□□□□□ -1.61
PDLIM2-220ENST00000622226 PRM1P04553 51 aa4.99□□□□□ -1.61
PDLIM2-220ENST00000622226 MT1BP07438 61 aa4.97□□□□□ -1.61
PDLIM2-220ENST00000622226 PKD1P98161 4303 aa4.93□□□□□ -1.62
PDLIM2-220ENST00000622226 RYR2Q92736 4967 aa4.92□□□□□ -1.62
PDLIM2-220ENST00000622226 KRTAP9-3Q9BYQ3 159 aa4.89□□□□□ -1.63
PDLIM2-220ENST00000622226 KIAA1109Q2LD37 5005 aa4.88□□□□□ -1.63
PDLIM2-220ENST00000622226 HERC1Q15751 4861 aa4.83□□□□□ -1.64
PDLIM2-220ENST00000622226 LCE1BQ5T7P3 118 aa4.83□□□□□ -1.64
PDLIM2-220ENST00000622226 HYDINQ4G0P3 5121 aa4.8□□□□□ -1.64
PDLIM2-220ENST00000622226 KRTAP20-1Q3LI63 56 aa4.8□□□□□ -1.64
PDLIM2-220ENST00000622226 TNXBP22105 4242 aa4.77□□□□□ -1.65
PDLIM2-220ENST00000622226 LCE1DQ5T752 114 aa4.76□□□□□ -1.65
PDLIM2-220ENST00000622226 KRTAP19-3Q7Z4W3 81 aa4.75□□□□□ -1.65
PDLIM2-220ENST00000622226 LOC100996750A0A140TA64 210 aa4.75□□□□□ -1.65
PDLIM2-220ENST00000622226 MT1LQ93083 61 aa4.74□□□□□ -1.65
PDLIM2-220ENST00000622226 KRTAP9-7A8MTY7 169 aa4.72□□□□□ -1.65
PDLIM2-220ENST00000622226 KRTAP4-3Q9BYR4 195 aa4.7□□□□□ -1.66
PDLIM2-220ENST00000622226 KRTAP19-6Q3LI70 58 aa4.68□□□□□ -1.66
PDLIM2-220ENST00000622226 LRP2P98164 4655 aa4.65□□□□□ -1.67
PDLIM2-220ENST00000622226 BIRC6Q9NR09 4857 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 109.2 ms