RNA–Protein interactions for RNA: ENST00000615798.4

COL12A1-211, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 5 BASIC

Gene COL12A1, Length 11,579 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-211ENST00000615798 ZNF469Q96JG9 3925 aaPredicted RBP3.97□□□□□ -1.77
COL12A1-211ENST00000615798 LCE3AQ5TA76 89 aa3.91□□□□□ -1.78
COL12A1-211ENST00000615798 DNAH9Q9NYC9 4486 aa3.89□□□□□ -1.79
COL12A1-211ENST00000615798 KRTAP10-7P60409 375 aaPredicted RBP3.86□□□□□ -1.79
COL12A1-211ENST00000615798 DNAH3Q8TD57 4116 aa3.86□□□□□ -1.79
COL12A1-211ENST00000615798 DNAH1Q9P2D7 4330 aa3.83□□□□□ -1.8
COL12A1-211ENST00000615798 CMYA5Q8N3K9 4069 aa3.83□□□□□ -1.8
COL12A1-211ENST00000615798 MT3P25713 68 aa3.83□□□□□ -1.8
COL12A1-211ENST00000615798 ANK2Q01484 3957 aa3.82□□□□□ -1.8
COL12A1-211ENST00000615798 VPS13DQ5THJ4 4388 aa3.82□□□□□ -1.8
COL12A1-211ENST00000615798 DNAH5Q8TE73 4624 aa3.81□□□□□ -1.8
COL12A1-211ENST00000615798 PLECQ15149 4684 aaKnown RBP3.8□□□□□ -1.8
COL12A1-211ENST00000615798 KRTAP19-4Q3LI73 84 aa3.79□□□□□ -1.8
COL12A1-211ENST00000615798 DNAH17Q9UFH2 4485 aa3.78□□□□□ -1.8
COL12A1-211ENST00000615798 DNAH10Q8IVF4 4471 aa3.78□□□□□ -1.8
COL12A1-211ENST00000615798 CSMD3Q7Z407 3707 aa3.77□□□□□ -1.81
COL12A1-211ENST00000615798 DNAH6Q9C0G6 4158 aa3.74□□□□□ -1.81
COL12A1-211ENST00000615798 DNAH11Q96DT5 4516 aa3.73□□□□□ -1.81
COL12A1-211ENST00000615798 DNAH2Q9P225 4427 aa3.71□□□□□ -1.82
COL12A1-211ENST00000615798 SPRR2GQ9BYE4 73 aa3.7□□□□□ -1.82
COL12A1-211ENST00000615798 DYNC2H1Q8NCM8 4307 aaKnown RBP3.69□□□□□ -1.82
COL12A1-211ENST00000615798 STARD9Q9P2P6 4700 aa3.69□□□□□ -1.82
COL12A1-211ENST00000615798 HECTD4Q9Y4D8 3996 aa3.64□□□□□ -1.83
COL12A1-211ENST00000615798 SACSQ9NZJ4 4579 aa3.62□□□□□ -1.83
COL12A1-211ENST00000615798 KRTAP8-1Q8IUC2 63 aa3.62□□□□□ -1.83
COL12A1-211ENST00000615798 LORP23490 312 aaPredicted RBP3.61□□□□□ -1.83
COL12A1-211ENST00000615798 VPS13BQ7Z7G8 4022 aa3.61□□□□□ -1.83
COL12A1-211ENST00000615798 DNAH8Q96JB1 4490 aa3.61□□□□□ -1.83
COL12A1-211ENST00000615798 DNAH7Q8WXX0 4024 aa3.6□□□□□ -1.83
COL12A1-211ENST00000615798 FAT2Q9NYQ8 4349 aa3.59□□□□□ -1.84
COL12A1-211ENST00000615798 DYNC1H1Q14204 4646 aaKnown RBP3.59□□□□□ -1.84
COL12A1-211ENST00000615798 KRTAP4-5Q9BYR2 181 aa3.58□□□□□ -1.84
COL12A1-211ENST00000615798 LRP1BQ9NZR2 4599 aa3.58□□□□□ -1.84
COL12A1-211ENST00000615798 PRKDCP78527 4128 aaKnown RBP3.57□□□□□ -1.84
COL12A1-211ENST00000615798 KMT2AQ03164 3969 aa3.55□□□□□ -1.84
COL12A1-211ENST00000615798 LCE3CQ5T5A8 94 aa3.55□□□□□ -1.84
COL12A1-211ENST00000615798 LYSTQ99698 3801 aa3.52□□□□□ -1.85
COL12A1-211ENST00000615798 MT1HP80294 61 aa3.49□□□□□ -1.85
COL12A1-211ENST00000615798 KRTAP4-1Q9BYQ7 146 aa3.48□□□□□ -1.85
COL12A1-211ENST00000615798 KRTAP12-4P60329 112 aa3.48□□□□□ -1.85
COL12A1-211ENST00000615798 MT2AP02795 61 aa3.46□□□□□ -1.86
COL12A1-211ENST00000615798 DNHD1Q96M86 4753 aa3.46□□□□□ -1.86
COL12A1-211ENST00000615798 KRTAP19-8Q3LI54 63 aa3.44□□□□□ -1.86
COL12A1-211ENST00000615798 SPRR5A0A1B0GTR4 108 aa3.44□□□□□ -1.86
COL12A1-211ENST00000615798 FRAS1Q86XX4 4008 aa3.43□□□□□ -1.86
COL12A1-211ENST00000615798 APOBP04114 4563 aaKnown RBP3.43□□□□□ -1.86
COL12A1-211ENST00000615798 RYR1P21817 5038 aa3.41□□□□□ -1.86
COL12A1-211ENST00000615798 FAT1Q14517 4588 aa3.41□□□□□ -1.86
COL12A1-211ENST00000615798 KRTAP19-5Q3LI72 72 aa3.4□□□□□ -1.87
COL12A1-211ENST00000615798 RYR2Q92736 4967 aa3.39□□□□□ -1.87
COL12A1-211ENST00000615798 PKHD1P08F94 4074 aa3.39□□□□□ -1.87
COL12A1-211ENST00000615798 FLGP20930 4061 aaPredicted RBP3.35□□□□□ -1.87
COL12A1-211ENST00000615798 MT1FP04733 61 aa3.35□□□□□ -1.87
COL12A1-211ENST00000615798 KRTAP19-1Q8IUB9 90 aa3.34□□□□□ -1.87
COL12A1-211ENST00000615798 LCE3BQ5TA77 95 aa3.34□□□□□ -1.87
COL12A1-211ENST00000615798 RYR3Q15413 4870 aa3.31□□□□□ -1.88
COL12A1-211ENST00000615798 FAT3Q8TDW7 4589 aa3.31□□□□□ -1.88
COL12A1-211ENST00000615798 PKHD1L1Q86WI1 4243 aa3.27□□□□□ -1.89
COL12A1-211ENST00000615798 MYCBP2O75592 4640 aa3.27□□□□□ -1.89
COL12A1-211ENST00000615798 HSPG2P98160 4391 aa3.26□□□□□ -1.89
COL12A1-211ENST00000615798 LCE3DQ9BYE3 92 aa3.25□□□□□ -1.89
COL12A1-211ENST00000615798 LCE3EQ5T5B0 92 aa3.25□□□□□ -1.89
COL12A1-211ENST00000615798 PKD1P98161 4303 aa3.23□□□□□ -1.89
COL12A1-211ENST00000615798 LRP1Q07954 4544 aaKnown RBP3.23□□□□□ -1.89
COL12A1-211ENST00000615798 KIAA1109Q2LD37 5005 aa3.22□□□□□ -1.89
COL12A1-211ENST00000615798 MT1XP80297 61 aa3.22□□□□□ -1.89
COL12A1-211ENST00000615798 SPRR2FQ96RM1 72 aa3.18□□□□□ -1.9
COL12A1-211ENST00000615798 KRTAP9-8Q9BYQ0 159 aa3.17□□□□□ -1.9
COL12A1-211ENST00000615798 MT1BP07438 61 aa3.17□□□□□ -1.9
COL12A1-211ENST00000615798 TNXBP22105 4242 aa3.14□□□□□ -1.91
COL12A1-211ENST00000615798 LCE2CQ5TA81 110 aa3.14□□□□□ -1.91
COL12A1-211ENST00000615798 KRTAP19-2Q3LHN2 52 aa3.13□□□□□ -1.91
COL12A1-211ENST00000615798 HERC1Q15751 4861 aa3.13□□□□□ -1.91
COL12A1-211ENST00000615798 PRM1P04553 51 aa3.13□□□□□ -1.91
COL12A1-211ENST00000615798 HYDINQ4G0P3 5121 aa3.1□□□□□ -1.91
COL12A1-211ENST00000615798 KRTAP9-3Q9BYQ3 159 aa3.09□□□□□ -1.91
COL12A1-211ENST00000615798 KRTAP17-1Q9BYP8 105 aa3.09□□□□□ -1.92
COL12A1-211ENST00000615798 LRP2P98164 4655 aa3.09□□□□□ -1.92
COL12A1-211ENST00000615798 HERC2O95714 4834 aa3.08□□□□□ -1.92
COL12A1-211ENST00000615798 MT1GP13640 62 aa3.07□□□□□ -1.92
COL12A1-211ENST00000615798 MUC17Q685J3 4493 aa3.05□□□□□ -1.92
COL12A1-211ENST00000615798 SPRR2EP22531 72 aa3.05□□□□□ -1.92
COL12A1-211ENST00000615798 SPRR2BP35325 72 aa3.05□□□□□ -1.92
COL12A1-211ENST00000615798 SPRR2AP35326 72 aa3.05□□□□□ -1.92
COL12A1-211ENST00000615798 PCLOQ9Y6V0 5065 aa3.03□□□□□ -1.92
COL12A1-211ENST00000615798 KMT2CQ8NEZ4 4911 aaKnown RBP3.02□□□□□ -1.93
COL12A1-211ENST00000615798 BIRC6Q9NR09 4857 aa3.01□□□□□ -1.93
COL12A1-211ENST00000615798 MT1LQ93083 61 aa3.01□□□□□ -1.93
COL12A1-211ENST00000615798 SPRR2DP22532 72 aa2.97□□□□□ -1.93
COL12A1-211ENST00000615798 MT1EP04732 61 aa2.93□□□□□ -1.94
COL12A1-211ENST00000615798 LCE2BO14633 110 aa2.93□□□□□ -1.94
COL12A1-211ENST00000615798 KRTAP19-3Q7Z4W3 81 aa2.91□□□□□ -1.94
COL12A1-211ENST00000615798 KRTAP19-6Q3LI70 58 aa2.87□□□□□ -1.95
COL12A1-211ENST00000615798 KRTAP4-8A0A0G2JLE6 195 aa2.82□□□□□ -1.96
COL12A1-211ENST00000615798 KRTAP4-8Q9BYQ9 185 aa2.82□□□□□ -1.96
COL12A1-211ENST00000615798 LPAP08519 4548 aa2.82□□□□□ -1.96
COL12A1-211ENST00000615798 KRTAP2-3P0C7H8 128 aa2.8□□□□□ -1.96
COL12A1-211ENST00000615798 KRTAP2-4Q9BYR9 128 aa2.8□□□□□ -1.96
COL12A1-211ENST00000615798 KRTAP2-1Q9BYU5 128 aa2.8□□□□□ -1.96
COL12A1-211ENST00000615798 ABCA13Q86UQ4 5058 aa2.79□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms