RNA–Protein interactions for RNA: ENST00000613421.4

GGA3-220, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 5,156 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-220ENST00000613421 KRTAP4-5Q9BYR2 181 aa6.28□□□□□ -1.4
GGA3-220ENST00000613421 DNAH5Q8TE73 4624 aa6.27□□□□□ -1.41
GGA3-220ENST00000613421 VPS13DQ5THJ4 4388 aa6.21□□□□□ -1.42
GGA3-220ENST00000613421 DNAH10Q8IVF4 4471 aa6.2□□□□□ -1.42
GGA3-220ENST00000613421 DNAH11Q96DT5 4516 aa6.2□□□□□ -1.42
GGA3-220ENST00000613421 DNAH17Q9UFH2 4485 aa6.2□□□□□ -1.42
GGA3-220ENST00000613421 STARD9Q9P2P6 4700 aa6.08□□□□□ -1.44
GGA3-220ENST00000613421 DNHD1Q96M86 4753 aa6.06□□□□□ -1.44
GGA3-220ENST00000613421 DNAH3Q8TD57 4116 aa6.05□□□□□ -1.44
GGA3-220ENST00000613421 DNAH2Q9P225 4427 aa6.04□□□□□ -1.44
GGA3-220ENST00000613421 LORP23490 312 aaPredicted RBP6.03□□□□□ -1.44
GGA3-220ENST00000613421 DYNC1H1Q14204 4646 aaKnown RBP6.01□□□□□ -1.45
GGA3-220ENST00000613421 LRP1BQ9NZR2 4599 aa5.98□□□□□ -1.45
GGA3-220ENST00000613421 KRTAP10-12P60413 245 aa5.97□□□□□ -1.45
GGA3-220ENST00000613421 DNAH8Q96JB1 4490 aa5.96□□□□□ -1.46
GGA3-220ENST00000613421 DYNC2H1Q8NCM8 4307 aaKnown RBP5.93□□□□□ -1.46
GGA3-220ENST00000613421 FAT1Q14517 4588 aa5.93□□□□□ -1.46
GGA3-220ENST00000613421 ANK2Q01484 3957 aa5.92□□□□□ -1.46
GGA3-220ENST00000613421 KRTAP23-1A1A580 65 aa5.91□□□□□ -1.46
GGA3-220ENST00000613421 PRKDCP78527 4128 aaKnown RBP5.91□□□□□ -1.46
GGA3-220ENST00000613421 SACSQ9NZJ4 4579 aa5.9□□□□□ -1.46
GGA3-220ENST00000613421 FAT2Q9NYQ8 4349 aa5.86□□□□□ -1.47
GGA3-220ENST00000613421 KRTAP4-1Q9BYQ7 146 aa5.86□□□□□ -1.47
GGA3-220ENST00000613421 KMT2AQ03164 3969 aa5.84□□□□□ -1.47
GGA3-220ENST00000613421 LCE3AQ5TA76 89 aa5.83□□□□□ -1.48
GGA3-220ENST00000613421 KRTAP12-3P60328 96 aa5.82□□□□□ -1.48
GGA3-220ENST00000613421 INE1O15225 51 aa5.81□□□□□ -1.48
GGA3-220ENST00000613421 CMYA5Q8N3K9 4069 aa5.79□□□□□ -1.48
GGA3-220ENST00000613421 VPS13BQ7Z7G8 4022 aa5.76□□□□□ -1.49
GGA3-220ENST00000613421 RYR1P21817 5038 aa5.75□□□□□ -1.49
GGA3-220ENST00000613421 APOBP04114 4563 aaKnown RBP5.7□□□□□ -1.5
GGA3-220ENST00000613421 DNAH6Q9C0G6 4158 aa5.69□□□□□ -1.5
GGA3-220ENST00000613421 LYSTQ99698 3801 aa5.66□□□□□ -1.5
GGA3-220ENST00000613421 FRAS1Q86XX4 4008 aa5.65□□□□□ -1.51
GGA3-220ENST00000613421 HECTD4Q9Y4D8 3996 aa5.65□□□□□ -1.51
GGA3-220ENST00000613421 MT1HP80294 61 aa5.64□□□□□ -1.51
GGA3-220ENST00000613421 DNAH7Q8WXX0 4024 aa5.61□□□□□ -1.51
GGA3-220ENST00000613421 SPRR2GQ9BYE4 73 aa5.59□□□□□ -1.51
GGA3-220ENST00000613421 MT2AP02795 61 aa5.58□□□□□ -1.52
GGA3-220ENST00000613421 CRCT1Q9UGL9 99 aa5.58□□□□□ -1.52
GGA3-220ENST00000613421 MYCBP2O75592 4640 aa5.55□□□□□ -1.52
GGA3-220ENST00000613421 RYR3Q15413 4870 aa5.53□□□□□ -1.52
GGA3-220ENST00000613421 KRTAP17-1Q9BYP8 105 aa5.52□□□□□ -1.53
GGA3-220ENST00000613421 KIAA1109Q2LD37 5005 aa5.52□□□□□ -1.53
GGA3-220ENST00000613421 MT1FP04733 61 aa5.49□□□□□ -1.53
GGA3-220ENST00000613421 LRP1Q07954 4544 aaKnown RBP5.47□□□□□ -1.53
GGA3-220ENST00000613421 RYR2Q92736 4967 aa5.46□□□□□ -1.54
GGA3-220ENST00000613421 FAT3Q8TDW7 4589 aa5.46□□□□□ -1.54
GGA3-220ENST00000613421 KRTAP8-1Q8IUC2 63 aa5.41□□□□□ -1.54
GGA3-220ENST00000613421 HYDINQ4G0P3 5121 aa5.39□□□□□ -1.55
GGA3-220ENST00000613421 KRTAP19-1Q8IUB9 90 aa5.28□□□□□ -1.56
GGA3-220ENST00000613421 PKHD1P08F94 4074 aa5.28□□□□□ -1.56
GGA3-220ENST00000613421 HSPG2P98160 4391 aa5.27□□□□□ -1.57
GGA3-220ENST00000613421 KRTAP19-5Q3LI72 72 aa5.26□□□□□ -1.57
GGA3-220ENST00000613421 KRTAP19-8Q3LI54 63 aa5.23□□□□□ -1.57
GGA3-220ENST00000613421 PKD1P98161 4303 aa5.22□□□□□ -1.57
GGA3-220ENST00000613421 KRTAP10-5P60370 271 aa5.22□□□□□ -1.57
GGA3-220ENST00000613421 LRP2P98164 4655 aa5.2□□□□□ -1.58
GGA3-220ENST00000613421 HERC2O95714 4834 aa5.19□□□□□ -1.58
GGA3-220ENST00000613421 BIRC6Q9NR09 4857 aa5.17□□□□□ -1.58
GGA3-220ENST00000613421 LCE3CQ5T5A8 94 aa5.17□□□□□ -1.58
GGA3-220ENST00000613421 KRTAP10-7P60409 375 aaPredicted RBP5.14□□□□□ -1.59
GGA3-220ENST00000613421 MT1XP80297 61 aa5.1□□□□□ -1.59
GGA3-220ENST00000613421 PKHD1L1Q86WI1 4243 aa5.1□□□□□ -1.59
GGA3-220ENST00000613421 LCE2CQ5TA81 110 aa5.09□□□□□ -1.6
GGA3-220ENST00000613421 KRTAP9-8Q9BYQ0 159 aa5.08□□□□□ -1.6
GGA3-220ENST00000613421 MT1BP07438 61 aa5.08□□□□□ -1.6
GGA3-220ENST00000613421 KMT2CQ8NEZ4 4911 aaKnown RBP5.06□□□□□ -1.6
GGA3-220ENST00000613421 TNXBP22105 4242 aa5.06□□□□□ -1.6
GGA3-220ENST00000613421 KRTAP19-4Q3LI73 84 aa5.05□□□□□ -1.6
GGA3-220ENST00000613421 LPAP08519 4548 aa5.04□□□□□ -1.6
GGA3-220ENST00000613421 HERC1Q15751 4861 aa5.03□□□□□ -1.6
GGA3-220ENST00000613421 SPRR2FQ96RM1 72 aa5.02□□□□□ -1.61
GGA3-220ENST00000613421 PCLOQ9Y6V0 5065 aa4.95□□□□□ -1.62
GGA3-220ENST00000613421 KRTAP19-2Q3LHN2 52 aa4.94□□□□□ -1.62
GGA3-220ENST00000613421 KRTAP9-3Q9BYQ3 159 aa4.94□□□□□ -1.62
GGA3-220ENST00000613421 SPRR5A0A1B0GTR4 108 aa4.94□□□□□ -1.62
GGA3-220ENST00000613421 MUC17Q685J3 4493 aa4.86□□□□□ -1.63
GGA3-220ENST00000613421 FLGP20930 4061 aaPredicted RBP4.85□□□□□ -1.63
GGA3-220ENST00000613421 KRTAP4-8A0A0G2JLE6 195 aa4.83□□□□□ -1.64
GGA3-220ENST00000613421 KRTAP4-8Q9BYQ9 185 aa4.83□□□□□ -1.64
GGA3-220ENST00000613421 EPPK1P58107 5090 aaKnown RBP4.78□□□□□ -1.64
GGA3-220ENST00000613421 ABCA13Q86UQ4 5058 aa4.78□□□□□ -1.64
GGA3-220ENST00000613421 MT1GP13640 62 aa4.72□□□□□ -1.65
GGA3-220ENST00000613421 LCE2BO14633 110 aa4.71□□□□□ -1.65
GGA3-220ENST00000613421 SPRR2EP22531 72 aa4.66□□□□□ -1.66
GGA3-220ENST00000613421 SPRR2BP35325 72 aa4.66□□□□□ -1.66
GGA3-220ENST00000613421 SPRR2AP35326 72 aa4.66□□□□□ -1.66
GGA3-220ENST00000613421 LCE3BQ5TA77 95 aa4.65□□□□□ -1.66
GGA3-220ENST00000613421 KRTAP9-2Q9BYQ4 174 aa4.63□□□□□ -1.67
GGA3-220ENST00000613421 MT1LQ93083 61 aa4.59□□□□□ -1.68
GGA3-220ENST00000613421 KRTAP12-4P60329 112 aa4.57□□□□□ -1.68
GGA3-220ENST00000613421 KRTAP4-7Q9BYR0 210 aa4.57□□□□□ -1.68
GGA3-220ENST00000613421 KRTAP9-6A0A140TA67 174 aa4.57□□□□□ -1.68
GGA3-220ENST00000613421 MT1EP04732 61 aa4.56□□□□□ -1.68
GGA3-220ENST00000613421 KRTAP19-3Q7Z4W3 81 aa4.54□□□□□ -1.68
GGA3-220ENST00000613421 FAT4Q6V0I7 4981 aa4.54□□□□□ -1.68
GGA3-220ENST00000613421 RNF213Q63HN8 5207 aa4.54□□□□□ -1.68
GGA3-220ENST00000613421 SPRR2DP22532 72 aa4.5□□□□□ -1.69
GGA3-220ENST00000613421 HMCN2Q8NDA2 5059 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 454 ms