RNA–Protein interactions for RNA: ENST00000584437.5

RNF43-208, Transcript of ring finger protein 43, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RNF43, Length 5,575 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43-208ENST00000584437 TRRAPQ9Y4A5 3859 aa5.22□□□□□ -1.57
RNF43-208ENST00000584437 KRTAP8-1Q8IUC2 63 aa5.2□□□□□ -1.58
RNF43-208ENST00000584437 ALMS1Q8TCU4 4167 aa5.13□□□□□ -1.59
RNF43-208ENST00000584437 SPRR2GQ9BYE4 73 aa5.11□□□□□ -1.59
RNF43-208ENST00000584437 KRTAP4-1Q9BYQ7 146 aa5.06□□□□□ -1.6
RNF43-208ENST00000584437 DNAH10Q8IVF4 4471 aa5.03□□□□□ -1.6
RNF43-208ENST00000584437 DNAH2Q9P225 4427 aa5.02□□□□□ -1.61
RNF43-208ENST00000584437 DNAH11Q96DT5 4516 aa5.02□□□□□ -1.61
RNF43-208ENST00000584437 KRTAP19-4Q3LI73 84 aa5.01□□□□□ -1.61
RNF43-208ENST00000584437 MT2AP02795 61 aa5□□□□□ -1.61
RNF43-208ENST00000584437 MT1HP80294 61 aa5□□□□□ -1.61
RNF43-208ENST00000584437 DNAH5Q8TE73 4624 aa5□□□□□ -1.61
RNF43-208ENST00000584437 LCE3CQ5T5A8 94 aa4.98□□□□□ -1.61
RNF43-208ENST00000584437 ZNF469Q96JG9 3925 aaPredicted RBP4.94□□□□□ -1.62
RNF43-208ENST00000584437 KRTAP19-5Q3LI72 72 aa4.94□□□□□ -1.62
RNF43-208ENST00000584437 PLECQ15149 4684 aaKnown RBP4.91□□□□□ -1.62
RNF43-208ENST00000584437 AKAP9Q99996 3911 aa4.89□□□□□ -1.63
RNF43-208ENST00000584437 DNAH9Q9NYC9 4486 aa4.89□□□□□ -1.63
RNF43-208ENST00000584437 FAT1Q14517 4588 aa4.89□□□□□ -1.63
RNF43-208ENST00000584437 DNAH1Q9P2D7 4330 aa4.88□□□□□ -1.63
RNF43-208ENST00000584437 MT1FP04733 61 aa4.87□□□□□ -1.63
RNF43-208ENST00000584437 KRTAP10-7P60409 375 aaPredicted RBP4.84□□□□□ -1.63
RNF43-208ENST00000584437 DNAH17Q9UFH2 4485 aa4.82□□□□□ -1.64
RNF43-208ENST00000584437 CSMD3Q7Z407 3707 aa4.79□□□□□ -1.64
RNF43-208ENST00000584437 SPRR2FQ96RM1 72 aa4.74□□□□□ -1.65
RNF43-208ENST00000584437 DNAH8Q96JB1 4490 aa4.74□□□□□ -1.65
RNF43-208ENST00000584437 VPS13DQ5THJ4 4388 aa4.74□□□□□ -1.65
RNF43-208ENST00000584437 KRTAP19-8Q3LI54 63 aa4.72□□□□□ -1.65
RNF43-208ENST00000584437 SPRR5A0A1B0GTR4 108 aa4.7□□□□□ -1.66
RNF43-208ENST00000584437 DYNC1H1Q14204 4646 aaKnown RBP4.68□□□□□ -1.66
RNF43-208ENST00000584437 SACSQ9NZJ4 4579 aa4.68□□□□□ -1.66
RNF43-208ENST00000584437 KRTAP19-1Q8IUB9 90 aa4.66□□□□□ -1.66
RNF43-208ENST00000584437 LRP1BQ9NZR2 4599 aa4.62□□□□□ -1.67
RNF43-208ENST00000584437 KRTAP12-4P60329 112 aa4.6□□□□□ -1.67
RNF43-208ENST00000584437 DYNC2H1Q8NCM8 4307 aaKnown RBP4.59□□□□□ -1.67
RNF43-208ENST00000584437 MT1XP80297 61 aa4.57□□□□□ -1.68
RNF43-208ENST00000584437 DNAH3Q8TD57 4116 aa4.56□□□□□ -1.68
RNF43-208ENST00000584437 FAT2Q9NYQ8 4349 aa4.55□□□□□ -1.68
RNF43-208ENST00000584437 APOBP04114 4563 aaKnown RBP4.54□□□□□ -1.68
RNF43-208ENST00000584437 LCE3BQ5TA77 95 aa4.54□□□□□ -1.68
RNF43-208ENST00000584437 RYR1P21817 5038 aa4.53□□□□□ -1.68
RNF43-208ENST00000584437 LRP1Q07954 4544 aaKnown RBP4.53□□□□□ -1.68
RNF43-208ENST00000584437 MT1BP07438 61 aa4.48□□□□□ -1.69
RNF43-208ENST00000584437 MT1GP13640 62 aa4.46□□□□□ -1.7
RNF43-208ENST00000584437 STARD9Q9P2P6 4700 aa4.44□□□□□ -1.7
RNF43-208ENST00000584437 FAT3Q8TDW7 4589 aa4.43□□□□□ -1.7
RNF43-208ENST00000584437 DNHD1Q96M86 4753 aa4.41□□□□□ -1.7
RNF43-208ENST00000584437 LCE3DQ9BYE3 92 aa4.41□□□□□ -1.7
RNF43-208ENST00000584437 ANK2Q01484 3957 aa4.4□□□□□ -1.71
RNF43-208ENST00000584437 SPRR2EP22531 72 aa4.39□□□□□ -1.71
RNF43-208ENST00000584437 SPRR2BP35325 72 aa4.39□□□□□ -1.71
RNF43-208ENST00000584437 SPRR2AP35326 72 aa4.39□□□□□ -1.71
RNF43-208ENST00000584437 LCE3EQ5T5B0 92 aa4.37□□□□□ -1.71
RNF43-208ENST00000584437 KRTAP9-8Q9BYQ0 159 aa4.37□□□□□ -1.71
RNF43-208ENST00000584437 LYSTQ99698 3801 aa4.37□□□□□ -1.71
RNF43-208ENST00000584437 CMYA5Q8N3K9 4069 aa4.35□□□□□ -1.71
RNF43-208ENST00000584437 VPS13BQ7Z7G8 4022 aa4.34□□□□□ -1.71
RNF43-208ENST00000584437 KRTAP4-8A0A0G2JLE6 195 aa4.31□□□□□ -1.72
RNF43-208ENST00000584437 KRTAP4-8Q9BYQ9 185 aa4.31□□□□□ -1.72
RNF43-208ENST00000584437 RYR3Q15413 4870 aa4.3□□□□□ -1.72
RNF43-208ENST00000584437 LCE2BO14633 110 aa4.29□□□□□ -1.72
RNF43-208ENST00000584437 KRTAP9-3Q9BYQ3 159 aa4.28□□□□□ -1.72
RNF43-208ENST00000584437 MYCBP2O75592 4640 aa4.27□□□□□ -1.73
RNF43-208ENST00000584437 DNAH6Q9C0G6 4158 aa4.27□□□□□ -1.73
RNF43-208ENST00000584437 HERC1Q15751 4861 aa4.27□□□□□ -1.73
RNF43-208ENST00000584437 PRKDCP78527 4128 aaKnown RBP4.26□□□□□ -1.73
RNF43-208ENST00000584437 HSPG2P98160 4391 aa4.26□□□□□ -1.73
RNF43-208ENST00000584437 SPRR2DP22532 72 aa4.26□□□□□ -1.73
RNF43-208ENST00000584437 FRAS1Q86XX4 4008 aa4.25□□□□□ -1.73
RNF43-208ENST00000584437 MT1LQ93083 61 aa4.24□□□□□ -1.73
RNF43-208ENST00000584437 KRTAP17-1Q9BYP8 105 aa4.24□□□□□ -1.73
RNF43-208ENST00000584437 LCE2CQ5TA81 110 aa4.23□□□□□ -1.73
RNF43-208ENST00000584437 DNAH7Q8WXX0 4024 aa4.22□□□□□ -1.73
RNF43-208ENST00000584437 RYR2Q92736 4967 aa4.21□□□□□ -1.74
RNF43-208ENST00000584437 KRTAP19-3Q7Z4W3 81 aa4.2□□□□□ -1.74
RNF43-208ENST00000584437 KMT2AQ03164 3969 aa4.18□□□□□ -1.74
RNF43-208ENST00000584437 PKD1P98161 4303 aa4.15□□□□□ -1.75
RNF43-208ENST00000584437 KIAA1109Q2LD37 5005 aa4.14□□□□□ -1.75
RNF43-208ENST00000584437 MT1EP04732 61 aa4.13□□□□□ -1.75
RNF43-208ENST00000584437 KRTAP4-7Q9BYR0 210 aa4.12□□□□□ -1.75
RNF43-208ENST00000584437 HECTD4Q9Y4D8 3996 aa4.07□□□□□ -1.76
RNF43-208ENST00000584437 PRM1P04553 51 aa4.04□□□□□ -1.76
RNF43-208ENST00000584437 MT3P25713 68 aa4.02□□□□□ -1.77
RNF43-208ENST00000584437 KRTAP19-2Q3LHN2 52 aa4.01□□□□□ -1.77
RNF43-208ENST00000584437 MT1MQ8N339 61 aa4□□□□□ -1.77
RNF43-208ENST00000584437 LRP2P98164 4655 aa3.97□□□□□ -1.77
RNF43-208ENST00000584437 HERC2O95714 4834 aa3.96□□□□□ -1.77
RNF43-208ENST00000584437 LCE2DQ5TA82 110 aaPredicted RBP3.9□□□□□ -1.78
RNF43-208ENST00000584437 HYDINQ4G0P3 5121 aa3.9□□□□□ -1.78
RNF43-208ENST00000584437 MUC17Q685J3 4493 aa3.9□□□□□ -1.79
RNF43-208ENST00000584437 PKHD1L1Q86WI1 4243 aa3.88□□□□□ -1.79
RNF43-208ENST00000584437 PCLOQ9Y6V0 5065 aa3.87□□□□□ -1.79
RNF43-208ENST00000584437 LOC100996750A0A140TA64 210 aa3.87□□□□□ -1.79
RNF43-208ENST00000584437 KRTAP2-3P0C7H8 128 aa3.86□□□□□ -1.79
RNF43-208ENST00000584437 KRTAP2-4Q9BYR9 128 aa3.86□□□□□ -1.79
RNF43-208ENST00000584437 KRTAP2-1Q9BYU5 128 aa3.86□□□□□ -1.79
RNF43-208ENST00000584437 KMT2CQ8NEZ4 4911 aaKnown RBP3.86□□□□□ -1.79
RNF43-208ENST00000584437 KRTAP19-6Q3LI70 58 aa3.84□□□□□ -1.8
RNF43-208ENST00000584437 PKHD1P08F94 4074 aa3.83□□□□□ -1.8
RNF43-208ENST00000584437 FLGP20930 4061 aaPredicted RBP3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms