RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 MT1BP07438 61 aa-1.57□□□□□ -2.66
SMCHD1-209ENST00000583441 NCBP2-AS2Q69YL0 99 aa-1.57□□□□□ -2.66
SMCHD1-209ENST00000583441 KRTAP8-1Q8IUC2 63 aa-1.57□□□□□ -2.66
SMCHD1-209ENST00000583441 MT1LQ93083 61 aa-1.57□□□□□ -2.66
SMCHD1-209ENST00000583441 CDC42BPGQ6DT37 1551 aa-1.57□□□□□ -2.66
SMCHD1-209ENST00000583441 DNAH5Q8TE73 4624 aa-1.57□□□□□ -2.66
SMCHD1-209ENST00000583441 TLN1Q9Y490 2541 aaKnown RBP-1.58□□□□□ -2.66
SMCHD1-209ENST00000583441 SPENQ96T58 3664 aaKnown RBP-1.58□□□□□ -2.66
SMCHD1-209ENST00000583441 SFTA3P0C7M3 94 aa-1.58□□□□□ -2.66
SMCHD1-209ENST00000583441 MGAQ8IWI9 3026 aa-1.58□□□□□ -2.66
SMCHD1-209ENST00000583441 GNG13Q9P2W3 67 aa-1.59□□□□□ -2.66
SMCHD1-209ENST00000583441 LY75O60449 1722 aa-1.6□□□□□ -2.67
SMCHD1-209ENST00000583441 HILPDAQ9Y5L2 63 aa-1.6□□□□□ -2.67
SMCHD1-209ENST00000583441 MYO5CQ9NQX4 1742 aa-1.6□□□□□ -2.67
SMCHD1-209ENST00000583441 C3P01024 1663 aa-1.61□□□□□ -2.67
SMCHD1-209ENST00000583441 MT1MQ8N339 61 aa-1.61□□□□□ -2.67
SMCHD1-209ENST00000583441 MYO15AQ9UKN7 3530 aa-1.61□□□□□ -2.67
SMCHD1-209ENST00000583441 CLASP1Q7Z460 1538 aa-1.61□□□□□ -2.67
SMCHD1-209ENST00000583441 TRRAPQ9Y4A5 3859 aa-1.62□□□□□ -2.67
SMCHD1-209ENST00000583441 MT2AP02795 61 aa-1.62□□□□□ -2.67
SMCHD1-209ENST00000583441 MT1GP13640 62 aa-1.62□□□□□ -2.67
SMCHD1-209ENST00000583441 DNAH17Q9UFH2 4485 aa-1.62□□□□□ -2.67
SMCHD1-209ENST00000583441 K7EMI3 77 aa-1.63□□□□□ -2.67
SMCHD1-209ENST00000583441 DUOX2Q9NRD8 1548 aa-1.63□□□□□ -2.67
SMCHD1-209ENST00000583441 DMXL2Q8TDJ6 3036 aa-1.64□□□□□ -2.67
SMCHD1-209ENST00000583441 MROH1Q8NDA8 1641 aa-1.64□□□□□ -2.67
SMCHD1-209ENST00000583441 SMCO4Q9NRQ5 59 aa-1.66□□□□□ -2.68
SMCHD1-209ENST00000583441 M0QY20 66 aa-1.67□□□□□ -2.68
SMCHD1-209ENST00000583441 PDCD5O14737 125 aa-1.67□□□□□ -2.68
SMCHD1-209ENST00000583441 ASXL1Q8IXJ9 1541 aa-1.67□□□□□ -2.68
SMCHD1-209ENST00000583441 UGGT2Q9NYU1 1516 aa-1.67□□□□□ -2.68
SMCHD1-209ENST00000583441 ZFHX4Q86UP3 3567 aa-1.67□□□□□ -2.68
SMCHD1-209ENST00000583441 BOD1L1Q8NFC6 3051 aa-1.68□□□□□ -2.68
SMCHD1-209ENST00000583441 MAST1Q9Y2H9 1570 aa-1.68□□□□□ -2.68
SMCHD1-209ENST00000583441 DNAH10Q8IVF4 4471 aa-1.68□□□□□ -2.68
SMCHD1-209ENST00000583441 M0QZ58 72 aa-1.69□□□□□ -2.68
SMCHD1-209ENST00000583441 ATMQ13315 3056 aa-1.69□□□□□ -2.68
SMCHD1-209ENST00000583441 ABCA9Q8IUA7 1624 aa-1.71□□□□□ -2.68
SMCHD1-209ENST00000583441 LINC01546A6NGU7 62 aa-1.72□□□□□ -2.68
SMCHD1-209ENST00000583441 LINC01549A6NIU2 74 aa-1.72□□□□□ -2.68
SMCHD1-209ENST00000583441 A8MTW9 85 aa-1.72□□□□□ -2.68
SMCHD1-209ENST00000583441 IQGAP3Q86VI3 1631 aa-1.73□□□□□ -2.69
SMCHD1-209ENST00000583441 MADDQ8WXG6 1647 aa-1.73□□□□□ -2.69
SMCHD1-209ENST00000583441 ABRACLQ9P1F3 81 aa-1.74□□□□□ -2.69
SMCHD1-209ENST00000583441 TIAM1Q13009 1591 aa-1.74□□□□□ -2.69
SMCHD1-209ENST00000583441 A0A1B0GUL6 1792 aa-1.75□□□□□ -2.69
SMCHD1-209ENST00000583441 CSMD2Q7Z408 3487 aa-1.75□□□□□ -2.69
SMCHD1-209ENST00000583441 SERF2P84101 59 aa-1.76□□□□□ -2.69
SMCHD1-209ENST00000583441 GLI2P10070 1586 aa-1.77□□□□□ -2.69
SMCHD1-209ENST00000583441 TMEM167BQ9NRX6 74 aa-1.78□□□□□ -2.69
SMCHD1-209ENST00000583441 PRUNE2Q8WUY3 3088 aa-1.79□□□□□ -2.7
SMCHD1-209ENST00000583441 M0R1W7 72 aa-1.8□□□□□ -2.7
SMCHD1-209ENST00000583441 DEFB4AO15263 64 aa-1.8□□□□□ -2.7
SMCHD1-209ENST00000583441 SPART-AS1P0CW21 52 aa-1.81□□□□□ -2.7
SMCHD1-209ENST00000583441 NMES1Q9C002 83 aa-1.81□□□□□ -2.7
SMCHD1-209ENST00000583441 CENPEQ02224 2701 aa-1.82□□□□□ -2.7
SMCHD1-209ENST00000583441 FREM2Q5SZK8 3169 aa-1.83□□□□□ -2.7
SMCHD1-209ENST00000583441 KAAG1Q9UBP8 84 aa-1.84□□□□□ -2.7
SMCHD1-209ENST00000583441 CROCC2H7BZ55 1655 aa-1.84□□□□□ -2.7
SMCHD1-209ENST00000583441 SCRIBQ14160 1630 aa-1.84□□□□□ -2.7
SMCHD1-209ENST00000583441 SMIM27A0A1W2PRY6 76 aa-1.85□□□□□ -2.71
SMCHD1-209ENST00000583441 LINC00308Q8TCZ7 52 aa-1.85□□□□□ -2.71
SMCHD1-209ENST00000583441 CRYBG3Q68DQ2 2970 aa-1.86□□□□□ -2.71
SMCHD1-209ENST00000583441 MT1FP04733 61 aa-1.88□□□□□ -2.71
SMCHD1-209ENST00000583441 ABCA6Q8N139 1617 aa-1.88□□□□□ -2.71
SMCHD1-209ENST00000583441 CFAP54Q96N23 3096 aa-1.89□□□□□ -2.71
SMCHD1-209ENST00000583441 EEA1Q15075 1411 aa-1.9□□□□□ -2.71
SMCHD1-209ENST00000583441 DMDP11532 3685 aa-1.9□□□□□ -2.71
SMCHD1-209ENST00000583441 IGIPA6NJ69 53 aa-1.91□□□□□ -2.72
SMCHD1-209ENST00000583441 EFCAB5A4FU69 1503 aa-1.91□□□□□ -2.72
SMCHD1-209ENST00000583441 PREX2Q70Z35 1606 aa-1.92□□□□□ -2.72
SMCHD1-209ENST00000583441 FAM208AQ9UK61 1670 aaKnown RBP-1.93□□□□□ -2.72
SMCHD1-209ENST00000583441 ALS2Q96Q42 1657 aa-1.96□□□□□ -2.72
SMCHD1-209ENST00000583441 A0A087WWC5 75 aa-1.96□□□□□ -2.72
SMCHD1-209ENST00000583441 WFDC10BQ8IUB3 73 aa-1.96□□□□□ -2.72
SMCHD1-209ENST00000583441 H0YGX0 51 aa-1.97□□□□□ -2.72
SMCHD1-209ENST00000583441 RPS29P62273 56 aaKnown RBP-1.97□□□□□ -2.72
SMCHD1-209ENST00000583441 LEAP2Q969E1 77 aa-1.97□□□□□ -2.72
SMCHD1-209ENST00000583441 SPEGQ15772 3267 aa-1.98□□□□□ -2.73
SMCHD1-209ENST00000583441 DEFB136Q30KP8 78 aa-1.99□□□□□ -2.73
SMCHD1-209ENST00000583441 KIF21BO75037 1637 aa-1.99□□□□□ -2.73
SMCHD1-209ENST00000583441 S100ZQ8WXG8 99 aa-2□□□□□ -2.73
SMCHD1-209ENST00000583441 EFCAB6Q5THR3 1501 aa-2.03□□□□□ -2.73
SMCHD1-209ENST00000583441 CEP350Q5VT06 3117 aa-2.03□□□□□ -2.73
SMCHD1-209ENST00000583441 WDFY3Q8IZQ1 3526 aa-2.04□□□□□ -2.74
SMCHD1-209ENST00000583441 DCHS1Q96JQ0 3298 aa-2.06□□□□□ -2.74
SMCHD1-209ENST00000583441 DEFB131AP59861 70 aa-2.07□□□□□ -2.74
SMCHD1-209ENST00000583441 FRYLO94915 3013 aa-2.07□□□□□ -2.74
SMCHD1-209ENST00000583441 CCDC180Q9P1Z9 1646 aa-2.08□□□□□ -2.74
SMCHD1-209ENST00000583441 EP400Q96L91 3159 aa-2.08□□□□□ -2.74
SMCHD1-209ENST00000583441 ABCA10Q8WWZ4 1543 aa-2.09□□□□□ -2.74
SMCHD1-209ENST00000583441 UGGT1Q9NYU2 1555 aa-2.1□□□□□ -2.75
SMCHD1-209ENST00000583441 POLR2KP53803 58 aaKnown RBP-2.1□□□□□ -2.75
SMCHD1-209ENST00000583441 PCNTO95613 3336 aa-2.11□□□□□ -2.75
SMCHD1-209ENST00000583441 WDFY4Q6ZS81 3184 aa-2.11□□□□□ -2.75
SMCHD1-209ENST00000583441 CPS1P31327 1500 aa-2.12□□□□□ -2.75
SMCHD1-209ENST00000583441 VPS13CQ709C8 3753 aa-2.12□□□□□ -2.75
SMCHD1-209ENST00000583441 SMIM5Q71RC9 77 aa-2.13□□□□□ -2.75
SMCHD1-209ENST00000583441 MUC3AQ02505 3323 aa-2.15□□□□□ -2.75
SMCHD1-209ENST00000583441 PLNP26678 52 aa-2.19□□□□□ -2.76
Retrieved 100 of 20,778 RNA–protein pairs in 225.7 ms