RNA–Protein interactions for RNA: ENST00000579483.1

MSI2-209, Transcript of musashi RNA binding protein 2, humanhuman

TSL 1 (best)

Gene MSI2, Length 5,141 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSI2-209ENST00000579483 BSNQ9UPA5 3926 aa4.48□□□□□ -1.69
MSI2-209ENST00000579483 DNAH5Q8TE73 4624 aa4.46□□□□□ -1.7
MSI2-209ENST00000579483 KRTAP3-2Q9BYR7 98 aa4.46□□□□□ -1.7
MSI2-209ENST00000579483 SVEP1Q4LDE5 3571 aa4.44□□□□□ -1.7
MSI2-209ENST00000579483 DNHD1Q96M86 4753 aa4.44□□□□□ -1.7
MSI2-209ENST00000579483 CUBNO60494 3623 aa4.43□□□□□ -1.7
MSI2-209ENST00000579483 PLECQ15149 4684 aaKnown RBP4.42□□□□□ -1.7
MSI2-209ENST00000579483 KRTAP23-1A1A580 65 aa4.4□□□□□ -1.71
MSI2-209ENST00000579483 DNAH17Q9UFH2 4485 aa4.39□□□□□ -1.71
MSI2-209ENST00000579483 MT1HP80294 61 aa4.38□□□□□ -1.71
MSI2-209ENST00000579483 VPS13DQ5THJ4 4388 aa4.38□□□□□ -1.71
MSI2-209ENST00000579483 KRTAP8-1Q8IUC2 63 aa4.37□□□□□ -1.71
MSI2-209ENST00000579483 LRP1BQ9NZR2 4599 aa4.36□□□□□ -1.71
MSI2-209ENST00000579483 DYNC1H1Q14204 4646 aaKnown RBP4.36□□□□□ -1.71
MSI2-209ENST00000579483 DNAH2Q9P225 4427 aa4.35□□□□□ -1.71
MSI2-209ENST00000579483 KRTAP12-3P60328 96 aa4.34□□□□□ -1.71
MSI2-209ENST00000579483 KRTAP4-1Q9BYQ7 146 aa4.29□□□□□ -1.72
MSI2-209ENST00000579483 MT2AP02795 61 aa4.27□□□□□ -1.73
MSI2-209ENST00000579483 CRCT1Q9UGL9 99 aa4.25□□□□□ -1.73
MSI2-209ENST00000579483 LORP23490 312 aaPredicted RBP4.24□□□□□ -1.73
MSI2-209ENST00000579483 MYCBP2O75592 4640 aa4.23□□□□□ -1.73
MSI2-209ENST00000579483 DNAH8Q96JB1 4490 aa4.22□□□□□ -1.73
MSI2-209ENST00000579483 SPRR2GQ9BYE4 73 aa4.22□□□□□ -1.73
MSI2-209ENST00000579483 LCE3AQ5TA76 89 aa4.21□□□□□ -1.74
MSI2-209ENST00000579483 RYR1P21817 5038 aa4.2□□□□□ -1.74
MSI2-209ENST00000579483 VPS13CQ709C8 3753 aa4.19□□□□□ -1.74
MSI2-209ENST00000579483 HSPG2P98160 4391 aa4.18□□□□□ -1.74
MSI2-209ENST00000579483 HERC1Q15751 4861 aa4.16□□□□□ -1.74
MSI2-209ENST00000579483 FAT2Q9NYQ8 4349 aa4.15□□□□□ -1.75
MSI2-209ENST00000579483 MT1FP04733 61 aa4.14□□□□□ -1.75
MSI2-209ENST00000579483 CMYA5Q8N3K9 4069 aa4.12□□□□□ -1.75
MSI2-209ENST00000579483 SACSQ9NZJ4 4579 aa4.1□□□□□ -1.75
MSI2-209ENST00000579483 BIRC6Q9NR09 4857 aa4.1□□□□□ -1.75
MSI2-209ENST00000579483 DNAH7Q8WXX0 4024 aa4.1□□□□□ -1.75
MSI2-209ENST00000579483 ZNF469Q96JG9 3925 aaPredicted RBP4.09□□□□□ -1.75
MSI2-209ENST00000579483 KRTAP19-4Q3LI73 84 aa4.09□□□□□ -1.76
MSI2-209ENST00000579483 SPRR2FQ96RM1 72 aa4.08□□□□□ -1.76
MSI2-209ENST00000579483 APOBP04114 4563 aaKnown RBP4.08□□□□□ -1.76
MSI2-209ENST00000579483 FAT1Q14517 4588 aa4.07□□□□□ -1.76
MSI2-209ENST00000579483 RYR3Q15413 4870 aa4.07□□□□□ -1.76
MSI2-209ENST00000579483 STARD9Q9P2P6 4700 aa4.06□□□□□ -1.76
MSI2-209ENST00000579483 PKHD1L1Q86WI1 4243 aa4.05□□□□□ -1.76
MSI2-209ENST00000579483 RYR2Q92736 4967 aa4.05□□□□□ -1.76
MSI2-209ENST00000579483 INE1O15225 51 aa4.05□□□□□ -1.76
MSI2-209ENST00000579483 PRKDCP78527 4128 aaKnown RBP4.04□□□□□ -1.76
MSI2-209ENST00000579483 KRTAP10-7P60409 375 aaPredicted RBP4.03□□□□□ -1.76
MSI2-209ENST00000579483 KIAA1109Q2LD37 5005 aa4.01□□□□□ -1.77
MSI2-209ENST00000579483 VPS13BQ7Z7G8 4022 aa3.99□□□□□ -1.77
MSI2-209ENST00000579483 KRTAP19-8Q3LI54 63 aa3.98□□□□□ -1.77
MSI2-209ENST00000579483 KRTAP17-1Q9BYP8 105 aa3.95□□□□□ -1.78
MSI2-209ENST00000579483 FAT3Q8TDW7 4589 aa3.93□□□□□ -1.78
MSI2-209ENST00000579483 KRTAP10-5P60370 271 aa3.91□□□□□ -1.78
MSI2-209ENST00000579483 LCE2DQ5TA82 110 aaPredicted RBP3.91□□□□□ -1.78
MSI2-209ENST00000579483 HERC2O95714 4834 aa3.9□□□□□ -1.79
MSI2-209ENST00000579483 SPRR2EP22531 72 aa3.89□□□□□ -1.79
MSI2-209ENST00000579483 SPRR2BP35325 72 aa3.89□□□□□ -1.79
MSI2-209ENST00000579483 SPRR2AP35326 72 aa3.89□□□□□ -1.79
MSI2-209ENST00000579483 CSMD3Q7Z407 3707 aa3.88□□□□□ -1.79
MSI2-209ENST00000579483 KRTAP19-5Q3LI72 72 aa3.87□□□□□ -1.79
MSI2-209ENST00000579483 KMT2AQ03164 3969 aa3.87□□□□□ -1.79
MSI2-209ENST00000579483 PKHD1P08F94 4074 aa3.87□□□□□ -1.79
MSI2-209ENST00000579483 LRP1Q07954 4544 aaKnown RBP3.86□□□□□ -1.79
MSI2-209ENST00000579483 KRTAP19-1Q8IUB9 90 aa3.86□□□□□ -1.79
MSI2-209ENST00000579483 FRAS1Q86XX4 4008 aa3.84□□□□□ -1.79
MSI2-209ENST00000579483 KRTAP9-8Q9BYQ0 159 aa3.83□□□□□ -1.8
MSI2-209ENST00000579483 MUC17Q685J3 4493 aa3.83□□□□□ -1.8
MSI2-209ENST00000579483 PCLOQ9Y6V0 5065 aa3.8□□□□□ -1.8
MSI2-209ENST00000579483 SPRR2DP22532 72 aa3.79□□□□□ -1.8
MSI2-209ENST00000579483 LCE2CQ5TA81 110 aa3.79□□□□□ -1.8
MSI2-209ENST00000579483 LCE3CQ5T5A8 94 aa3.78□□□□□ -1.8
MSI2-209ENST00000579483 HECTD4Q9Y4D8 3996 aa3.78□□□□□ -1.8
MSI2-209ENST00000579483 KRTAP9-3Q9BYQ3 159 aa3.77□□□□□ -1.81
MSI2-209ENST00000579483 LCE2BO14633 110 aa3.76□□□□□ -1.81
MSI2-209ENST00000579483 MT1BP07438 61 aa3.76□□□□□ -1.81
MSI2-209ENST00000579483 PKD1P98161 4303 aa3.73□□□□□ -1.81
MSI2-209ENST00000579483 MT1XP80297 61 aa3.73□□□□□ -1.81
MSI2-209ENST00000579483 MT1GP13640 62 aa3.69□□□□□ -1.82
MSI2-209ENST00000579483 KRTAP12-4P60329 112 aa3.68□□□□□ -1.82
MSI2-209ENST00000579483 KRTAP9-2Q9BYQ4 174 aa3.68□□□□□ -1.82
MSI2-209ENST00000579483 LYSTQ99698 3801 aa3.67□□□□□ -1.82
MSI2-209ENST00000579483 TNXBP22105 4242 aa3.65□□□□□ -1.82
MSI2-209ENST00000579483 LCE2AQ5TA79 106 aaPredicted RBP3.6□□□□□ -1.83
MSI2-209ENST00000579483 EPPK1P58107 5090 aaKnown RBP3.59□□□□□ -1.84
MSI2-209ENST00000579483 KRTAP19-6Q3LI70 58 aa3.59□□□□□ -1.84
MSI2-209ENST00000579483 KMT2CQ8NEZ4 4911 aaKnown RBP3.59□□□□□ -1.84
MSI2-209ENST00000579483 KRTAP9-6A0A140TA67 174 aa3.58□□□□□ -1.84
MSI2-209ENST00000579483 KRTAP19-2Q3LHN2 52 aa3.58□□□□□ -1.84
MSI2-209ENST00000579483 ABCA13Q86UQ4 5058 aa3.54□□□□□ -1.84
MSI2-209ENST00000579483 KRTAP19-3Q7Z4W3 81 aa3.53□□□□□ -1.84
MSI2-209ENST00000579483 LRP2P98164 4655 aa3.52□□□□□ -1.85
MSI2-209ENST00000579483 HYDINQ4G0P3 5121 aa3.51□□□□□ -1.85
MSI2-209ENST00000579483 KRTAP4-8A0A0G2JLE6 195 aa3.51□□□□□ -1.85
MSI2-209ENST00000579483 KRTAP4-8Q9BYQ9 185 aa3.51□□□□□ -1.85
MSI2-209ENST00000579483 LCE3BQ5TA77 95 aa3.43□□□□□ -1.86
MSI2-209ENST00000579483 MT1EP04732 61 aa3.41□□□□□ -1.86
MSI2-209ENST00000579483 MT1LQ93083 61 aa3.41□□□□□ -1.86
MSI2-209ENST00000579483 FLGP20930 4061 aaPredicted RBP3.36□□□□□ -1.87
MSI2-209ENST00000579483 UBR4Q5T4S7 5183 aa3.36□□□□□ -1.87
MSI2-209ENST00000579483 KRTAP9-7A8MTY7 169 aa3.34□□□□□ -1.88
MSI2-209ENST00000579483 RNF213Q63HN8 5207 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms