RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 LCA10Q71F78 164 aa2.43□□□□□ -2.02
VPS53-208ENST00000570650 RBM3P98179 157 aaKnown RBP2.42□□□□□ -2.02
VPS53-208ENST00000570650 MMP24-AS1A0A0U1RRL7 71 aa2.41□□□□□ -2.02
VPS53-208ENST00000570650 Q5W150 140 aa2.41□□□□□ -2.02
VPS53-208ENST00000570650 PRO1854Q9UHT4 67 aa2.41□□□□□ -2.02
VPS53-208ENST00000570650 DSTQ03001 7570 aaKnown RBP2.41□□□□□ -2.02
VPS53-208ENST00000570650 hDV103S1A0JD37 113 aa2.4□□□□□ -2.03
VPS53-208ENST00000570650 C9JAW5 83 aa2.4□□□□□ -2.03
VPS53-208ENST00000570650 COX8AP10176 69 aa2.4□□□□□ -2.03
VPS53-208ENST00000570650 K7EQZ3 153 aa2.38□□□□□ -2.03
VPS53-208ENST00000570650 DLEU1O43261 78 aa2.38□□□□□ -2.03
VPS53-208ENST00000570650 C1orf64Q8NEQ6 169 aa2.38□□□□□ -2.03
VPS53-208ENST00000570650 A0A1B0GW54 56 aa2.37□□□□□ -2.03
VPS53-208ENST00000570650 COX6CP09669 75 aa2.37□□□□□ -2.03
VPS53-208ENST00000570650 PSMB2P49721 201 aa2.37□□□□□ -2.03
VPS53-208ENST00000570650 CEND1Q8N111 149 aa2.37□□□□□ -2.03
VPS53-208ENST00000570650 HIST3H2BBQ8N257 126 aa2.37□□□□□ -2.03
VPS53-208ENST00000570650 HIGD1BQ9P298 99 aa2.37□□□□□ -2.03
VPS53-208ENST00000570650 PLAC4Q8WY50 150 aa2.36□□□□□ -2.03
VPS53-208ENST00000570650 A8MUN3 132 aa2.35□□□□□ -2.03
VPS53-208ENST00000570650 FXYD2P54710 66 aa2.35□□□□□ -2.03
VPS53-208ENST00000570650 KRTAP4-3Q9BYR4 195 aa2.35□□□□□ -2.03
VPS53-208ENST00000570650 NREPQ16612 68 aa2.34□□□□□ -2.03
VPS53-208ENST00000570650 C14orf144Q96I85 54 aa2.34□□□□□ -2.03
VPS53-208ENST00000570650 HIST1H2BLQ99880 126 aa2.34□□□□□ -2.03
VPS53-208ENST00000570650 HCG22E2RYF7 251 aa2.33□□□□□ -2.04
VPS53-208ENST00000570650 BAALC-AS2P0C853 105 aa2.33□□□□□ -2.04
VPS53-208ENST00000570650 S100A2P29034 98 aa2.33□□□□□ -2.04
VPS53-208ENST00000570650 LOC110117498A0A087WWA1 95 aa2.32□□□□□ -2.04
VPS53-208ENST00000570650 PDE6GP18545 87 aa2.32□□□□□ -2.04
VPS53-208ENST00000570650 CXCL6P80162 114 aa2.32□□□□□ -2.04
VPS53-208ENST00000570650 JMJD7-PLA2G4BH0Y9G9 81 aa2.31□□□□□ -2.04
VPS53-208ENST00000570650 K7ERJ3 54 aa2.31□□□□□ -2.04
VPS53-208ENST00000570650 H0YAA0 97 aa2.3□□□□□ -2.04
VPS53-208ENST00000570650 KRTAP5-10Q6L8G5 202 aa2.3□□□□□ -2.04
VPS53-208ENST00000570650 CASC2Q6XLA1 102 aa2.3□□□□□ -2.04
VPS53-208ENST00000570650 PRO0461Q9UI25 63 aa2.3□□□□□ -2.04
VPS53-208ENST00000570650 SCGB1C2P0DMR2 95 aa2.29□□□□□ -2.04
VPS53-208ENST00000570650 SPATA45Q537H7 98 aa2.29□□□□□ -2.04
VPS53-208ENST00000570650 SEC61GP60059 68 aa2.28□□□□□ -2.04
VPS53-208ENST00000570650 C14orf132Q9NPU4 83 aa2.28□□□□□ -2.04
VPS53-208ENST00000570650 A0A087WVE0 104 aa2.27□□□□□ -2.05
VPS53-208ENST00000570650 BPY2O14599 106 aa2.27□□□□□ -2.05
VPS53-208ENST00000570650 MT4P47944 62 aa2.27□□□□□ -2.05
VPS53-208ENST00000570650 ADM2Q7Z4H4 148 aa2.27□□□□□ -2.05
VPS53-208ENST00000570650 PCP4L1A6NKN8 68 aa2.26□□□□□ -2.05
VPS53-208ENST00000570650 HSD52Q0P140 79 aa2.26□□□□□ -2.05
VPS53-208ENST00000570650 KRTAP5-7Q6L8G8 165 aa2.26□□□□□ -2.05
VPS53-208ENST00000570650 KRTAP5-5Q701N2 237 aaPredicted RBP2.26□□□□□ -2.05
VPS53-208ENST00000570650 NDUFC1O43677 76 aa2.25□□□□□ -2.05
VPS53-208ENST00000570650 ATXN8Q156A1 80 aa2.25□□□□□ -2.05
VPS53-208ENST00000570650 Q8N9L7 120 aa2.25□□□□□ -2.05
VPS53-208ENST00000570650 VAMP8Q9BV40 100 aa2.25□□□□□ -2.05
VPS53-208ENST00000570650 AHNAK2Q8IVF2 5795 aa2.25□□□□□ -2.05
VPS53-208ENST00000570650 S100A6P06703 90 aa2.24□□□□□ -2.05
VPS53-208ENST00000570650 R4GN34 69 aa2.24□□□□□ -2.05
VPS53-208ENST00000570650 KRTAP19-3Q7Z4W3 81 aa2.22□□□□□ -2.05
VPS53-208ENST00000570650 S100A1P23297 94 aa2.21□□□□□ -2.06
VPS53-208ENST00000570650 HMCN1Q96RW7 5635 aa2.21□□□□□ -2.06
VPS53-208ENST00000570650 M0QZ58 72 aa2.2□□□□□ -2.06
VPS53-208ENST00000570650 CYP4F30PQ9H0H9 118 aa2.2□□□□□ -2.06
VPS53-208ENST00000570650 CYSTM1Q9H1C7 97 aa2.2□□□□□ -2.06
VPS53-208ENST00000570650 SPRR5A0A1B0GTR4 108 aa2.19□□□□□ -2.06
VPS53-208ENST00000570650 LINC01554Q52M75 96 aa2.19□□□□□ -2.06
VPS53-208ENST00000570650 NAA38Q9BRA0 125 aaKnown RBP2.19□□□□□ -2.06
VPS53-208ENST00000570650 TP53AIP1Q9HCN2 124 aa2.19□□□□□ -2.06
VPS53-208ENST00000570650 C20orf197Q8N268 126 aa2.18□□□□□ -2.06
VPS53-208ENST00000570650 K7EP34 96 aa2.17□□□□□ -2.06
VPS53-208ENST00000570650 MT1EP04732 61 aa2.17□□□□□ -2.06
VPS53-208ENST00000570650 P0C880 135 aa2.17□□□□□ -2.06
VPS53-208ENST00000570650 KRTAP19-7Q3SYF9 63 aa2.17□□□□□ -2.06
VPS53-208ENST00000570650 LCE3DQ9BYE3 92 aa2.15□□□□□ -2.07
VPS53-208ENST00000570650 LOC101927531A0A1B0GV80 90 aa2.14□□□□□ -2.07
VPS53-208ENST00000570650 ACYP1P07311 99 aa2.14□□□□□ -2.07
VPS53-208ENST00000570650 MT1GP13640 62 aa2.14□□□□□ -2.07
VPS53-208ENST00000570650 TRAV22A0A0B4J277 110 aa2.13□□□□□ -2.07
VPS53-208ENST00000570650 UQCR10Q9UDW1 63 aa2.13□□□□□ -2.07
VPS53-208ENST00000570650 BATFQ16520 125 aa2.12□□□□□ -2.07
VPS53-208ENST00000570650 PP632Q6XCG6 107 aa2.12□□□□□ -2.07
VPS53-208ENST00000570650 KRTAP5-2Q701N4 177 aa2.12□□□□□ -2.07
VPS53-208ENST00000570650 TSTD3H0UI37 97 aa2.11□□□□□ -2.07
VPS53-208ENST00000570650 H3BT86 120 aa2.11□□□□□ -2.07
VPS53-208ENST00000570650 UBL5Q9BZL1 73 aa2.11□□□□□ -2.07
VPS53-208ENST00000570650 LCE1CQ5T751 118 aa2.1□□□□□ -2.07
VPS53-208ENST00000570650 LCE1BQ5T7P3 118 aa2.1□□□□□ -2.07
VPS53-208ENST00000570650 MT-ATP8P03928 68 aa2.09□□□□□ -2.07
VPS53-208ENST00000570650 PYY3Q5JQD4 70 aa2.09□□□□□ -2.07
VPS53-208ENST00000570650 MT1MQ8N339 61 aa2.09□□□□□ -2.07
VPS53-208ENST00000570650 M0R143 59 aa2.07□□□□□ -2.08
VPS53-208ENST00000570650 A0A1W2PPM0 123 aa2.06□□□□□ -2.08
VPS53-208ENST00000570650 KRTAP20-2Q3LI61 65 aa2.06□□□□□ -2.08
VPS53-208ENST00000570650 SPCS1Q9Y6A9 102 aa2.06□□□□□ -2.08
VPS53-208ENST00000570650 ATOX1O00244 68 aa2.05□□□□□ -2.08
VPS53-208ENST00000570650 H0Y9P7 68 aa2.04□□□□□ -2.08
VPS53-208ENST00000570650 KRTAP19-5Q3LI72 72 aa2.04□□□□□ -2.08
VPS53-208ENST00000570650 V9GYY9 64 aa2.04□□□□□ -2.08
VPS53-208ENST00000570650 UQCRQO14949 82 aa2.03□□□□□ -2.08
VPS53-208ENST00000570650 MT1LQ93083 61 aa2.02□□□□□ -2.09
VPS53-208ENST00000570650 CAMK2N1Q7Z7J9 78 aa2.01□□□□□ -2.09
VPS53-208ENST00000570650 A0A0D9SG42 100 aa2□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms