RNA–Protein interactions for RNA: ENST00000568169.5

TCF4-238, Transcript of transcription factor 4, human

TSL 5

Gene TCF4, Length 870 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-238	ENST00000568169	IMUP	Q9GZP8	106 aa		4.94	□□□□□ -1.62
TCF4-238	ENST00000568169	UQCR10	Q9UDW1	63 aa		4.94	□□□□□ -1.62
TCF4-238	ENST00000568169	SPRR2F	Q96RM1	72 aa		4.93	□□□□□ -1.62
TCF4-238	ENST00000568169	HCG22	E2RYF7	251 aa		4.92	□□□□□ -1.62
TCF4-238	ENST00000568169	C1orf64	Q8NEQ6	169 aa		4.91	□□□□□ -1.62
TCF4-238	ENST00000568169	CXCL6	P80162	114 aa		4.9	□□□□□ -1.63
TCF4-238	ENST00000568169	CASC2	Q6XLA1	102 aa		4.9	□□□□□ -1.63
TCF4-238	ENST00000568169	KRTAP2-2	Q9BYT5	123 aa		4.9	□□□□□ -1.63
TCF4-238	ENST00000568169	KRTAP2-1	Q9BYU5	128 aa		4.9	□□□□□ -1.63
TCF4-238	ENST00000568169	BPY2	O14599	106 aa		4.89	□□□□□ -1.63
TCF4-238	ENST00000568169	CRIPT	Q9P021	101 aa		4.89	□□□□□ -1.63
TCF4-238	ENST00000568169	TMA7	Q9Y2S6	64 aa	Known RBP	4.89	□□□□□ -1.63
TCF4-238	ENST00000568169	NAA38	Q9BRA0	125 aa	Known RBP	4.88	□□□□□ -1.63
TCF4-238	ENST00000568169		Q8N9L7	120 aa		4.86	□□□□□ -1.63
TCF4-238	ENST00000568169	LCE1A	Q5T7P2	110 aa		4.85	□□□□□ -1.63
TCF4-238	ENST00000568169	SMIM6	P0DI80	62 aa		4.81	□□□□□ -1.64
TCF4-238	ENST00000568169	KRTAP8-1	Q8IUC2	63 aa		4.81	□□□□□ -1.64
TCF4-238	ENST00000568169	MT1X	P80297	61 aa		4.79	□□□□□ -1.64
TCF4-238	ENST00000568169	PRO2289	Q9P1D8	64 aa		4.79	□□□□□ -1.64
TCF4-238	ENST00000568169		M0R143	59 aa		4.78	□□□□□ -1.64
TCF4-238	ENST00000568169	SPRR2D	P22532	72 aa		4.78	□□□□□ -1.64
TCF4-238	ENST00000568169		A0A087WVE0	104 aa		4.76	□□□□□ -1.65
TCF4-238	ENST00000568169		H3BT86	120 aa		4.76	□□□□□ -1.65
TCF4-238	ENST00000568169	KRTAP12-2	P59991	146 aa		4.74	□□□□□ -1.65
TCF4-238	ENST00000568169	TSTD3	H0UI37	97 aa		4.73	□□□□□ -1.65
TCF4-238	ENST00000568169		H0YAA0	97 aa		4.72	□□□□□ -1.65
TCF4-238	ENST00000568169	TP53AIP1	Q9HCN2	124 aa		4.71	□□□□□ -1.66
TCF4-238	ENST00000568169	LOC105371267	A0A1B0GV96	52 aa		4.7	□□□□□ -1.66
TCF4-238	ENST00000568169	CYP4F30P	Q9H0H9	118 aa		4.7	□□□□□ -1.66
TCF4-238	ENST00000568169		A8MUN3	132 aa		4.69	□□□□□ -1.66
TCF4-238	ENST00000568169	PLAC4	Q8WY50	150 aa		4.67	□□□□□ -1.66
TCF4-238	ENST00000568169	NDUFC1	O43677	76 aa		4.65	□□□□□ -1.67
TCF4-238	ENST00000568169	UBL5	Q9BZL1	73 aa		4.65	□□□□□ -1.67
TCF4-238	ENST00000568169	ADM2	Q7Z4H4	148 aa		4.64	□□□□□ -1.67
TCF4-238	ENST00000568169		A0A1W2PPM0	123 aa		4.62	□□□□□ -1.67
TCF4-238	ENST00000568169	BATF	Q16520	125 aa		4.6	□□□□□ -1.67
TCF4-238	ENST00000568169	LOC101927531	A0A1B0GV80	90 aa		4.59	□□□□□ -1.67
TCF4-238	ENST00000568169		K7EP34	96 aa		4.58	□□□□□ -1.68
TCF4-238	ENST00000568169	TAX1BP3	O14907	124 aa		4.58	□□□□□ -1.68
TCF4-238	ENST00000568169	TRAV22	A0A0B4J277	110 aa		4.57	□□□□□ -1.68
TCF4-238	ENST00000568169	KRTAP10-7	P60409	375 aa	Predicted RBP	4.55	□□□□□ -1.68
TCF4-238	ENST00000568169	KRTAP10-12	P60413	245 aa		4.55	□□□□□ -1.68
TCF4-238	ENST00000568169	GPR98	Q8WXG9	6306 aa		4.54	□□□□□ -1.68
TCF4-238	ENST00000568169	COL5A1-AS1	Q5SY13	56 aa		4.54	□□□□□ -1.68
TCF4-238	ENST00000568169		R4GN34	69 aa		4.54	□□□□□ -1.68
TCF4-238	ENST00000568169	ACYP1	P07311	99 aa		4.52	□□□□□ -1.69
TCF4-238	ENST00000568169	SPCS1	Q9Y6A9	102 aa		4.52	□□□□□ -1.69
TCF4-238	ENST00000568169		P0C880	135 aa		4.51	□□□□□ -1.69
TCF4-238	ENST00000568169	PRO0461	Q9UI25	63 aa		4.5	□□□□□ -1.69
TCF4-238	ENST00000568169		M0QZ58	72 aa		4.49	□□□□□ -1.69
TCF4-238	ENST00000568169	C20orf197	Q8N268	126 aa		4.47	□□□□□ -1.69
TCF4-238	ENST00000568169		H0Y9P7	68 aa		4.45	□□□□□ -1.7
TCF4-238	ENST00000568169	UQCRQ	O14949	82 aa		4.45	□□□□□ -1.7
TCF4-238	ENST00000568169	GTF2H5	Q6ZYL4	71 aa		4.45	□□□□□ -1.7
TCF4-238	ENST00000568169	ATOX1	O00244	68 aa		4.44	□□□□□ -1.7
TCF4-238	ENST00000568169	LINC01554	Q52M75	96 aa		4.44	□□□□□ -1.7
TCF4-238	ENST00000568169	DST	Q03001	7570 aa	Known RBP	4.43	□□□□□ -1.7
TCF4-238	ENST00000568169	PCP4L1	A6NKN8	68 aa		4.41	□□□□□ -1.7
TCF4-238	ENST00000568169		F8W1H4	67 aa		4.4	□□□□□ -1.71
TCF4-238	ENST00000568169	LINC00208	Q96KT6	92 aa		4.35	□□□□□ -1.71
TCF4-238	ENST00000568169	ETDB	Q3ZM63	59 aa		4.33	□□□□□ -1.72
TCF4-238	ENST00000568169	HIST1H4A	P62805	103 aa	Known RBP	4.31	□□□□□ -1.72
TCF4-238	ENST00000568169	KRTAP19-7	Q3SYF9	63 aa		4.29	□□□□□ -1.72
TCF4-238	ENST00000568169	ATP5EP2	Q5VTU8	51 aa		4.29	□□□□□ -1.72
TCF4-238	ENST00000568169	KRTAP19-3	Q7Z4W3	81 aa		4.29	□□□□□ -1.72
TCF4-238	ENST00000568169	FAM240A	A0A1B0GVK7	77 aa		4.28	□□□□□ -1.72
TCF4-238	ENST00000568169	DMAC1	Q96GE9	116 aa		4.28	□□□□□ -1.72
TCF4-238	ENST00000568169	MT-ATP8	P03928	68 aa		4.27	□□□□□ -1.73
TCF4-238	ENST00000568169	MT1E	P04732	61 aa		4.26	□□□□□ -1.73
TCF4-238	ENST00000568169	MP68	P56378	58 aa		4.26	□□□□□ -1.73
TCF4-238	ENST00000568169	OCR1	Q9BZK8	76 aa		4.24	□□□□□ -1.73
TCF4-238	ENST00000568169	MT4	P47944	62 aa		4.2	□□□□□ -1.74
TCF4-238	ENST00000568169	CYSTM1	Q9H1C7	97 aa		4.2	□□□□□ -1.74
TCF4-238	ENST00000568169		A0A1B0GV90	55 aa		4.18	□□□□□ -1.74
TCF4-238	ENST00000568169	TRAV7	A0A075B6U4	112 aa		4.17	□□□□□ -1.74
TCF4-238	ENST00000568169		H3BPC8	53 aa		4.17	□□□□□ -1.74
TCF4-238	ENST00000568169		J3QR89	54 aa		4.17	□□□□□ -1.74
TCF4-238	ENST00000568169	KRTAP5-10	Q6L8G5	202 aa		4.17	□□□□□ -1.74
TCF4-238	ENST00000568169	LINC00643	Q86TS7	51 aa		4.17	□□□□□ -1.74
TCF4-238	ENST00000568169	MT1G	P13640	62 aa		4.16	□□□□□ -1.74
TCF4-238	ENST00000568169	CAMK2N1	Q7Z7J9	78 aa		4.12	□□□□□ -1.75
TCF4-238	ENST00000568169	AHNAK2	Q8IVF2	5795 aa		4.12	□□□□□ -1.75
TCF4-238	ENST00000568169	HMCN1	Q96RW7	5635 aa		4.12	□□□□□ -1.75
TCF4-238	ENST00000568169	PP632	Q6XCG6	107 aa		4.11	□□□□□ -1.75
TCF4-238	ENST00000568169	ACYP2	P14621	99 aa		4.1	□□□□□ -1.75
TCF4-238	ENST00000568169	KRTAP5-4	Q6L8H1	288 aa		4.1	□□□□□ -1.75
TCF4-238	ENST00000568169	SPTSSB	Q8NFR3	76 aa		4.1	□□□□□ -1.75
TCF4-238	ENST00000568169	KRTAP19-5	Q3LI72	72 aa		4.08	□□□□□ -1.76
TCF4-238	ENST00000568169	KRTAP13-4	Q3LI77	160 aa		4.08	□□□□□ -1.76
TCF4-238	ENST00000568169	MT1M	Q8N339	61 aa		4.08	□□□□□ -1.76
TCF4-238	ENST00000568169	KRTAP5-7	Q6L8G8	165 aa		4.06	□□□□□ -1.76
TCF4-238	ENST00000568169		K7ERU9	68 aa		4.05	□□□□□ -1.76
TCF4-238	ENST00000568169		A0A0D9SG42	100 aa		4.04	□□□□□ -1.76
TCF4-238	ENST00000568169	MT3	P25713	68 aa		4.04	□□□□□ -1.76
TCF4-238	ENST00000568169	KRTAP5-11	Q6L8G4	156 aa		4.02	□□□□□ -1.77
TCF4-238	ENST00000568169	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	4.02	□□□□□ -1.77
TCF4-238	ENST00000568169	MT1L	Q93083	61 aa		4.02	□□□□□ -1.77
TCF4-238	ENST00000568169	KRTAP4-3	Q9BYR4	195 aa		4	□□□□□ -1.77
TCF4-238	ENST00000568169	CHKB-CPT1B	H3BT56	60 aa		3.99	□□□□□ -1.77
TCF4-238	ENST00000568169	LCE1E	Q5T753	118 aa		3.99	□□□□□ -1.77

Retrieved 100 of 20,778 RNA–protein pairs in 125.5 ms