RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 RPS29P62273 56 aaKnown RBP1.19□□□□□ -2.22
VPS13C-208ENST00000559119 ANK3Q12955 4377 aaKnown RBP1.19□□□□□ -2.22
VPS13C-208ENST00000559119 MTORP42345 2549 aa1.19□□□□□ -2.22
VPS13C-208ENST00000559119 FLNBO75369 2602 aaKnown RBP1.19□□□□□ -2.22
VPS13C-208ENST00000559119 FLNAP21333 2647 aaKnown RBP1.19□□□□□ -2.22
VPS13C-208ENST00000559119 APCP25054 2843 aa1.18□□□□□ -2.22
VPS13C-208ENST00000559119 UBR5O95071 2799 aaPredicted RBP1.18□□□□□ -2.22
VPS13C-208ENST00000559119 Q6ZRN7 208 aaPredicted RBP1.18□□□□□ -2.22
VPS13C-208ENST00000559119 PLAC4Q8WY50 150 aa1.18□□□□□ -2.22
VPS13C-208ENST00000559119 C10orf95Q9H7T3 257 aa1.18□□□□□ -2.22
VPS13C-208ENST00000559119 S4R3F8 94 aa1.18□□□□□ -2.22
VPS13C-208ENST00000559119 NF1P21359 2839 aa1.18□□□□□ -2.22
VPS13C-208ENST00000559119 ITPR3Q14573 2671 aa1.18□□□□□ -2.22
VPS13C-208ENST00000559119 UTP20O75691 2785 aaKnown RBP1.18□□□□□ -2.22
VPS13C-208ENST00000559119 JMJD1CQ15652 2540 aa1.17□□□□□ -2.22
VPS13C-208ENST00000559119 PRO2289Q9P1D8 64 aa1.17□□□□□ -2.22
VPS13C-208ENST00000559119 APLNQ9ULZ1 77 aa1.17□□□□□ -2.22
VPS13C-208ENST00000559119 FLNCQ14315 2725 aa1.17□□□□□ -2.22
VPS13C-208ENST00000559119 ZNF469Q96JG9 3925 aaPredicted RBP1.17□□□□□ -2.22
VPS13C-208ENST00000559119 MXRA5Q9NR99 2828 aa1.17□□□□□ -2.22
VPS13C-208ENST00000559119 VPS13CQ709C8 3753 aa1.17□□□□□ -2.22
VPS13C-208ENST00000559119 GCN1Q92616 2671 aaKnown RBP1.16□□□□□ -2.22
VPS13C-208ENST00000559119 CSMD2Q7Z408 3487 aa1.16□□□□□ -2.22
VPS13C-208ENST00000559119 TEX15Q9BXT5 2789 aa1.16□□□□□ -2.22
VPS13C-208ENST00000559119 MAST4O15021 2626 aa1.16□□□□□ -2.22
VPS13C-208ENST00000559119 TEP1Q99973 2627 aaKnown RBP1.16□□□□□ -2.22
VPS13C-208ENST00000559119 VPS13DQ5THJ4 4388 aa1.15□□□□□ -2.22
VPS13C-208ENST00000559119 NSD1Q96L73 2696 aaPredicted RBP1.15□□□□□ -2.22
VPS13C-208ENST00000559119 NBEAL2Q6ZNJ1 2754 aa1.15□□□□□ -2.22
VPS13C-208ENST00000559119 CRYBG3Q68DQ2 2970 aa1.15□□□□□ -2.22
VPS13C-208ENST00000559119 UBE2DNLQ8IWF7 75 aa1.15□□□□□ -2.23
VPS13C-208ENST00000559119 FLG2Q5D862 2391 aaPredicted RBP1.15□□□□□ -2.23
VPS13C-208ENST00000559119 A0A0D9SG42 100 aa1.14□□□□□ -2.23
VPS13C-208ENST00000559119 M0QZ58 72 aa1.14□□□□□ -2.23
VPS13C-208ENST00000559119 SMR3AQ99954 134 aa1.14□□□□□ -2.23
VPS13C-208ENST00000559119 DNAH8Q96JB1 4490 aa1.14□□□□□ -2.23
VPS13C-208ENST00000559119 FBN2P35556 2912 aa1.14□□□□□ -2.23
VPS13C-208ENST00000559119 ITPR2Q14571 2701 aa1.14□□□□□ -2.23
VPS13C-208ENST00000559119 TRRAPQ9Y4A5 3859 aa1.13□□□□□ -2.23
VPS13C-208ENST00000559119 TENM4Q6N022 2769 aa1.13□□□□□ -2.23
VPS13C-208ENST00000559119 SRRM2Q9UQ35 2752 aaKnown RBP1.13□□□□□ -2.23
VPS13C-208ENST00000559119 DNAH17Q9UFH2 4485 aa1.12□□□□□ -2.23
VPS13C-208ENST00000559119 INE1O15225 51 aa1.12□□□□□ -2.23
VPS13C-208ENST00000559119 PDZD2O15018 2839 aa1.12□□□□□ -2.23
VPS13C-208ENST00000559119 NIPBLQ6KC79 2804 aaeCLIP1.12□□□□□ -2.23
VPS13C-208ENST00000559119 SETD2Q9BYW2 2564 aaPredicted RBP1.12□□□□□ -2.23
VPS13C-208ENST00000559119 HIVEP1P15822 2718 aa1.12□□□□□ -2.23
VPS13C-208ENST00000559119 DNAH10Q8IVF4 4471 aa1.12□□□□□ -2.23
VPS13C-208ENST00000559119 CENPEQ02224 2701 aa1.11□□□□□ -2.23
VPS13C-208ENST00000559119 DNAH3Q8TD57 4116 aa1.11□□□□□ -2.23
VPS13C-208ENST00000559119 ZANQ9Y493 2812 aa1.11□□□□□ -2.23
VPS13C-208ENST00000559119 ATRQ13535 2644 aa1.11□□□□□ -2.23
VPS13C-208ENST00000559119 FRAS1Q86XX4 4008 aa1.11□□□□□ -2.23
VPS13C-208ENST00000559119 DYNC2H1Q8NCM8 4307 aaKnown RBP1.11□□□□□ -2.23
VPS13C-208ENST00000559119 ANK2Q01484 3957 aa1.1□□□□□ -2.23
VPS13C-208ENST00000559119 CUBNO60494 3623 aa1.1□□□□□ -2.23
VPS13C-208ENST00000559119 LYSTQ99698 3801 aa1.1□□□□□ -2.23
VPS13C-208ENST00000559119 STAB1Q9NY15 2570 aa1.09□□□□□ -2.24
VPS13C-208ENST00000559119 DNAH9Q9NYC9 4486 aa1.09□□□□□ -2.24
VPS13C-208ENST00000559119 MEGF8Q7Z7M0 2845 aa1.09□□□□□ -2.24
VPS13C-208ENST00000559119 MGAM2Q2M2H8 2515 aa1.09□□□□□ -2.24
VPS13C-208ENST00000559119 DNAH2Q9P225 4427 aa1.08□□□□□ -2.24
VPS13C-208ENST00000559119 COL6A5A8TX70 2615 aa1.08□□□□□ -2.24
VPS13C-208ENST00000559119 VWFP04275 2813 aa1.08□□□□□ -2.24
VPS13C-208ENST00000559119 SACSQ9NZJ4 4579 aa1.08□□□□□ -2.24
VPS13C-208ENST00000559119 DNHD1Q96M86 4753 aa1.07□□□□□ -2.24
VPS13C-208ENST00000559119 DNAH11Q96DT5 4516 aa1.07□□□□□ -2.24
VPS13C-208ENST00000559119 DNAH7Q8WXX0 4024 aa1.07□□□□□ -2.24
VPS13C-208ENST00000559119 PRKDCP78527 4128 aaKnown RBP1.07□□□□□ -2.24
VPS13C-208ENST00000559119 HUWE1Q7Z6Z7 4374 aaKnown RBP1.07□□□□□ -2.24
VPS13C-208ENST00000559119 MYCBP2O75592 4640 aa1.06□□□□□ -2.24
VPS13C-208ENST00000559119 PKD1L1Q8TDX9 2849 aa1.06□□□□□ -2.24
VPS13C-208ENST00000559119 C9orf92A6NGG3 77 aa1.06□□□□□ -2.24
VPS13C-208ENST00000559119 DNAH6Q9C0G6 4158 aa1.06□□□□□ -2.24
VPS13C-208ENST00000559119 CSMD3Q7Z407 3707 aa1.06□□□□□ -2.24
VPS13C-208ENST00000559119 TGP01266 2768 aa1.06□□□□□ -2.24
VPS13C-208ENST00000559119 NOTCH1P46531 2555 aa1.05□□□□□ -2.24
VPS13C-208ENST00000559119 CMYA5Q8N3K9 4069 aa1.05□□□□□ -2.24
VPS13C-208ENST00000559119 TENM3Q9P273 2699 aa1.05□□□□□ -2.24
VPS13C-208ENST00000559119 HECTD4Q9Y4D8 3996 aa1.05□□□□□ -2.24
VPS13C-208ENST00000559119 Q5VSD8 79 aa1.05□□□□□ -2.24
VPS13C-208ENST00000559119 STAB2Q8WWQ8 2551 aa1.03□□□□□ -2.24
VPS13C-208ENST00000559119 PLECQ15149 4684 aaKnown RBP1.03□□□□□ -2.24
VPS13C-208ENST00000559119 NBEAL1Q6ZS30 2694 aa1.02□□□□□ -2.25
VPS13C-208ENST00000559119 COL7A1Q02388 2944 aa1.02□□□□□ -2.25
VPS13C-208ENST00000559119 LRP1BQ9NZR2 4599 aa1.01□□□□□ -2.25
VPS13C-208ENST00000559119 DNAH5Q8TE73 4624 aa1.01□□□□□ -2.25
VPS13C-208ENST00000559119 APOBP04114 4563 aaKnown RBP1.01□□□□□ -2.25
VPS13C-208ENST00000559119 LRP1Q07954 4544 aaKnown RBP1□□□□□ -2.25
VPS13C-208ENST00000559119 PKHD1L1Q86WI1 4243 aa1□□□□□ -2.25
VPS13C-208ENST00000559119 KMT2AQ03164 3969 aa1□□□□□ -2.25
VPS13C-208ENST00000559119 TNP1P09430 55 aa1□□□□□ -2.25
VPS13C-208ENST00000559119 STARD9Q9P2P6 4700 aa1□□□□□ -2.25
VPS13C-208ENST00000559119 KRTAP10-4P60372 401 aaPredicted RBP0.99□□□□□ -2.25
VPS13C-208ENST00000559119 DMBT1Q9UGM3 2413 aaPredicted RBP0.99□□□□□ -2.25
VPS13C-208ENST00000559119 DYNC1H1Q14204 4646 aaKnown RBP0.99□□□□□ -2.25
VPS13C-208ENST00000559119 FAT3Q8TDW7 4589 aa0.97□□□□□ -2.25
VPS13C-208ENST00000559119 PKHD1P08F94 4074 aa0.97□□□□□ -2.25
VPS13C-208ENST00000559119 RYR2Q92736 4967 aa0.97□□□□□ -2.25
VPS13C-208ENST00000559119 HYDINQ4G0P3 5121 aa0.96□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms