RNA–Protein interactions for RNA: ENST00000556445.1

SRP54-211, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 530 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-211ENST00000556445 WFDC13Q8IUB5 93 aa2.84□□□□□ -1.95
SRP54-211ENST00000556445 ALMS1Q8TCU4 4167 aa2.83□□□□□ -1.96
SRP54-211ENST00000556445 KRTAP13-2Q52LG2 175 aa2.83□□□□□ -1.96
SRP54-211ENST00000556445 DNAH6Q9C0G6 4158 aa2.82□□□□□ -1.96
SRP54-211ENST00000556445 H7BZZ5 65 aa2.82□□□□□ -1.96
SRP54-211ENST00000556445 MRPL34Q9BQ48 92 aaKnown RBP2.82□□□□□ -1.96
SRP54-211ENST00000556445 SNURFQ9Y675 71 aa2.82□□□□□ -1.96
SRP54-211ENST00000556445 STARD9Q9P2P6 4700 aa2.81□□□□□ -1.96
SRP54-211ENST00000556445 TRAV22A0A0B4J277 110 aa2.81□□□□□ -1.96
SRP54-211ENST00000556445 MIR22HGQ0VDD5 57 aa2.81□□□□□ -1.96
SRP54-211ENST00000556445 LINC00304Q8N9R0 145 aa2.81□□□□□ -1.96
SRP54-211ENST00000556445 PLECQ15149 4684 aaKnown RBP2.8□□□□□ -1.96
SRP54-211ENST00000556445 H0Y9P7 68 aa2.8□□□□□ -1.96
SRP54-211ENST00000556445 PRO2289Q9P1D8 64 aa2.8□□□□□ -1.96
SRP54-211ENST00000556445 SMR3BP02814 79 aaPredicted RBP2.79□□□□□ -1.96
SRP54-211ENST00000556445 HRES1P13985 223 aa2.79□□□□□ -1.96
SRP54-211ENST00000556445 Q1T7F1 81 aa2.79□□□□□ -1.96
SRP54-211ENST00000556445 ZCCHC13Q8WW36 166 aaKnown RBP2.79□□□□□ -1.96
SRP54-211ENST00000556445 LINC00208Q96KT6 92 aa2.79□□□□□ -1.96
SRP54-211ENST00000556445 KRTAP5-5Q701N2 237 aaPredicted RBP2.78□□□□□ -1.96
SRP54-211ENST00000556445 LYSTQ99698 3801 aa2.78□□□□□ -1.96
SRP54-211ENST00000556445 CYSTM1Q9H1C7 97 aa2.78□□□□□ -1.96
SRP54-211ENST00000556445 KRTAP10-4P60372 401 aaPredicted RBP2.77□□□□□ -1.97
SRP54-211ENST00000556445 KMT2AQ03164 3969 aa2.77□□□□□ -1.97
SRP54-211ENST00000556445 DNAH10Q8IVF4 4471 aa2.76□□□□□ -1.97
SRP54-211ENST00000556445 LOC101927531A0A1B0GV80 90 aa2.76□□□□□ -1.97
SRP54-211ENST00000556445 CYP4F30PQ9H0H9 118 aa2.76□□□□□ -1.97
SRP54-211ENST00000556445 DNHD1Q96M86 4753 aa2.75□□□□□ -1.97
SRP54-211ENST00000556445 DNAH17Q9UFH2 4485 aa2.75□□□□□ -1.97
SRP54-211ENST00000556445 HECTD4Q9Y4D8 3996 aa2.75□□□□□ -1.97
SRP54-211ENST00000556445 Q5VSD8 79 aa2.74□□□□□ -1.97
SRP54-211ENST00000556445 SRRM2Q9UQ35 2752 aaKnown RBP2.74□□□□□ -1.97
SRP54-211ENST00000556445 DNAH2Q9P225 4427 aa2.72□□□□□ -1.97
SRP54-211ENST00000556445 SPTSSBQ8NFR3 76 aa2.71□□□□□ -1.98
SRP54-211ENST00000556445 FRAS1Q86XX4 4008 aa2.7□□□□□ -1.98
SRP54-211ENST00000556445 TPRXLQ17RH7 258 aa2.69□□□□□ -1.98
SRP54-211ENST00000556445 PCOTHQ58A44 107 aa2.69□□□□□ -1.98
SRP54-211ENST00000556445 CDC42SE1Q9NRR8 79 aa2.69□□□□□ -1.98
SRP54-211ENST00000556445 ACYP2P14621 99 aa2.68□□□□□ -1.98
SRP54-211ENST00000556445 DNAH8Q96JB1 4490 aa2.68□□□□□ -1.98
SRP54-211ENST00000556445 PKD1P98161 4303 aa2.67□□□□□ -1.98
SRP54-211ENST00000556445 CSAG1Q6PB30 78 aa2.67□□□□□ -1.98
SRP54-211ENST00000556445 COA5Q86WW8 74 aa2.66□□□□□ -1.98
SRP54-211ENST00000556445 C9orf92A6NGG3 77 aa2.65□□□□□ -1.99
SRP54-211ENST00000556445 DMAC1Q96GE9 116 aa2.65□□□□□ -1.99
SRP54-211ENST00000556445 FLG2Q5D862 2391 aaPredicted RBP2.65□□□□□ -1.99
SRP54-211ENST00000556445 DNAH11Q96DT5 4516 aa2.65□□□□□ -1.99
SRP54-211ENST00000556445 FAT2Q9NYQ8 4349 aa2.64□□□□□ -1.99
SRP54-211ENST00000556445 KRTAP5-2Q701N4 177 aa2.64□□□□□ -1.99
SRP54-211ENST00000556445 DNAH5Q8TE73 4624 aa2.63□□□□□ -1.99
SRP54-211ENST00000556445 CHKB-CPT1BH3BT56 60 aa2.63□□□□□ -1.99
SRP54-211ENST00000556445 MT1HL1P0DM35 61 aa2.62□□□□□ -1.99
SRP54-211ENST00000556445 HYDINQ4G0P3 5121 aa2.62□□□□□ -1.99
SRP54-211ENST00000556445 RPL37P61927 97 aaKnown RBP2.6□□□□□ -1.99
SRP54-211ENST00000556445 Q5VV11 94 aa2.6□□□□□ -1.99
SRP54-211ENST00000556445 VPS13BQ7Z7G8 4022 aa2.6□□□□□ -1.99
SRP54-211ENST00000556445 DMBT1Q9UGM3 2413 aaPredicted RBP2.6□□□□□ -1.99
SRP54-211ENST00000556445 LRP1BQ9NZR2 4599 aa2.59□□□□□ -1.99
SRP54-211ENST00000556445 SPINK7P58062 85 aa2.59□□□□□ -1.99
SRP54-211ENST00000556445 LCE1CQ5T751 118 aa2.59□□□□□ -1.99
SRP54-211ENST00000556445 LCE1BQ5T7P3 118 aa2.59□□□□□ -1.99
SRP54-211ENST00000556445 LCE3DQ9BYE3 92 aa2.59□□□□□ -1.99
SRP54-211ENST00000556445 LINC01558Q9Y6Z2 57 aa2.59□□□□□ -1.99
SRP54-211ENST00000556445 SACSQ9NZJ4 4579 aa2.59□□□□□ -2
SRP54-211ENST00000556445 PRR15LQ9BU68 103 aa2.58□□□□□ -2
SRP54-211ENST00000556445 DYNC1H1Q14204 4646 aaKnown RBP2.57□□□□□ -2
SRP54-211ENST00000556445 COX6B2Q6YFQ2 88 aa2.57□□□□□ -2
SRP54-211ENST00000556445 RYR2Q92736 4967 aa2.56□□□□□ -2
SRP54-211ENST00000556445 PKHD1P08F94 4074 aa2.55□□□□□ -2
SRP54-211ENST00000556445 A0A1B0GU69 56 aa2.53□□□□□ -2
SRP54-211ENST00000556445 APOBP04114 4563 aaKnown RBP2.53□□□□□ -2
SRP54-211ENST00000556445 PKHD1L1Q86WI1 4243 aa2.52□□□□□ -2.01
SRP54-211ENST00000556445 KMT2CQ8NEZ4 4911 aaKnown RBP2.49□□□□□ -2.01
SRP54-211ENST00000556445 UQCR11O14957 56 aa2.49□□□□□ -2.01
SRP54-211ENST00000556445 H1FX-AS1Q4G0G2 97 aa2.48□□□□□ -2.01
SRP54-211ENST00000556445 S4R3F8 94 aa2.48□□□□□ -2.01
SRP54-211ENST00000556445 PP632Q6XCG6 107 aa2.47□□□□□ -2.01
SRP54-211ENST00000556445 FAT1Q14517 4588 aa2.47□□□□□ -2.01
SRP54-211ENST00000556445 HSPG2P98160 4391 aa2.47□□□□□ -2.01
SRP54-211ENST00000556445 INE1O15225 51 aa2.46□□□□□ -2.02
SRP54-211ENST00000556445 RYR1P21817 5038 aa2.45□□□□□ -2.02
SRP54-211ENST00000556445 SPATA8Q6RVD6 105 aa2.45□□□□□ -2.02
SRP54-211ENST00000556445 TNXBP22105 4242 aa2.43□□□□□ -2.02
SRP54-211ENST00000556445 KIAA1109Q2LD37 5005 aa2.42□□□□□ -2.02
SRP54-211ENST00000556445 LRP1Q07954 4544 aaKnown RBP2.4□□□□□ -2.03
SRP54-211ENST00000556445 H0YAA0 97 aa2.4□□□□□ -2.03
SRP54-211ENST00000556445 RYR3Q15413 4870 aa2.4□□□□□ -2.03
SRP54-211ENST00000556445 FAT3Q8TDW7 4589 aa2.39□□□□□ -2.03
SRP54-211ENST00000556445 KRTAP10-10P60014 251 aa2.37□□□□□ -2.03
SRP54-211ENST00000556445 M0QZ58 72 aa2.36□□□□□ -2.03
SRP54-211ENST00000556445 SPRR5A0A1B0GTR4 108 aa2.34□□□□□ -2.03
SRP54-211ENST00000556445 KRTAP4-1Q9BYQ7 146 aa2.34□□□□□ -2.03
SRP54-211ENST00000556445 EPPK1P58107 5090 aaKnown RBP2.33□□□□□ -2.04
SRP54-211ENST00000556445 MYCBP2O75592 4640 aa2.32□□□□□ -2.04
SRP54-211ENST00000556445 KRTAP19-2Q3LHN2 52 aa2.3□□□□□ -2.04
SRP54-211ENST00000556445 BIRC6Q9NR09 4857 aa2.29□□□□□ -2.04
SRP54-211ENST00000556445 CRIPTQ9P021 101 aa2.29□□□□□ -2.04
SRP54-211ENST00000556445 A0A0D9SG42 100 aa2.28□□□□□ -2.04
SRP54-211ENST00000556445 KRTAP13-4Q3LI77 160 aa2.28□□□□□ -2.04
SRP54-211ENST00000556445 HERC2O95714 4834 aa2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms