RNA–Protein interactions for RNA: ENST00000556399.5

ARHGEF40-207, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 1 (best)

Gene ARHGEF40, Length 4,902 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-207ENST00000556399 VPS13DQ5THJ4 4388 aa7.14□□□□□ -1.27
ARHGEF40-207ENST00000556399 KRTAP15-1Q3LI76 137 aa7.11□□□□□ -1.27
ARHGEF40-207ENST00000556399 DNAH8Q96JB1 4490 aa7.11□□□□□ -1.27
ARHGEF40-207ENST00000556399 DNAH3Q8TD57 4116 aa7.06□□□□□ -1.28
ARHGEF40-207ENST00000556399 STARD9Q9P2P6 4700 aa7.04□□□□□ -1.28
ARHGEF40-207ENST00000556399 DNAH5Q8TE73 4624 aa7.04□□□□□ -1.28
ARHGEF40-207ENST00000556399 ALMS1Q8TCU4 4167 aa7.03□□□□□ -1.28
ARHGEF40-207ENST00000556399 MT1HL1P0DM35 61 aa7.02□□□□□ -1.29
ARHGEF40-207ENST00000556399 DNAH2Q9P225 4427 aa7.01□□□□□ -1.29
ARHGEF40-207ENST00000556399 ANK2Q01484 3957 aa7□□□□□ -1.29
ARHGEF40-207ENST00000556399 LRP1BQ9NZR2 4599 aa6.92□□□□□ -1.3
ARHGEF40-207ENST00000556399 CMYA5Q8N3K9 4069 aa6.89□□□□□ -1.31
ARHGEF40-207ENST00000556399 KMT2AQ03164 3969 aa6.86□□□□□ -1.31
ARHGEF40-207ENST00000556399 FRAS1Q86XX4 4008 aa6.86□□□□□ -1.31
ARHGEF40-207ENST00000556399 LYSTQ99698 3801 aa6.86□□□□□ -1.31
ARHGEF40-207ENST00000556399 PRKDCP78527 4128 aaKnown RBP6.8□□□□□ -1.32
ARHGEF40-207ENST00000556399 FAT1Q14517 4588 aa6.79□□□□□ -1.32
ARHGEF40-207ENST00000556399 DYNC1H1Q14204 4646 aaKnown RBP6.78□□□□□ -1.32
ARHGEF40-207ENST00000556399 DYNC2H1Q8NCM8 4307 aaKnown RBP6.77□□□□□ -1.33
ARHGEF40-207ENST00000556399 SACSQ9NZJ4 4579 aa6.75□□□□□ -1.33
ARHGEF40-207ENST00000556399 HECTD4Q9Y4D8 3996 aa6.74□□□□□ -1.33
ARHGEF40-207ENST00000556399 VPS13BQ7Z7G8 4022 aa6.74□□□□□ -1.33
ARHGEF40-207ENST00000556399 LORP23490 312 aaPredicted RBP6.73□□□□□ -1.33
ARHGEF40-207ENST00000556399 DNHD1Q96M86 4753 aa6.72□□□□□ -1.33
ARHGEF40-207ENST00000556399 DNAH7Q8WXX0 4024 aa6.71□□□□□ -1.33
ARHGEF40-207ENST00000556399 INE1O15225 51 aa6.66□□□□□ -1.34
ARHGEF40-207ENST00000556399 DNAH6Q9C0G6 4158 aa6.65□□□□□ -1.34
ARHGEF40-207ENST00000556399 KRTAP4-5Q9BYR2 181 aa6.64□□□□□ -1.35
ARHGEF40-207ENST00000556399 FAT2Q9NYQ8 4349 aa6.59□□□□□ -1.35
ARHGEF40-207ENST00000556399 APOBP04114 4563 aaKnown RBP6.5□□□□□ -1.37
ARHGEF40-207ENST00000556399 KRTAP23-1A1A580 65 aa6.48□□□□□ -1.37
ARHGEF40-207ENST00000556399 MYCBP2O75592 4640 aa6.47□□□□□ -1.37
ARHGEF40-207ENST00000556399 KRTAP4-1Q9BYQ7 146 aa6.42□□□□□ -1.38
ARHGEF40-207ENST00000556399 LCE3AQ5TA76 89 aa6.37□□□□□ -1.39
ARHGEF40-207ENST00000556399 RYR1P21817 5038 aa6.36□□□□□ -1.39
ARHGEF40-207ENST00000556399 HYDINQ4G0P3 5121 aa6.35□□□□□ -1.39
ARHGEF40-207ENST00000556399 LRP1Q07954 4544 aaKnown RBP6.34□□□□□ -1.39
ARHGEF40-207ENST00000556399 KRTAP10-12P60413 245 aa6.33□□□□□ -1.4
ARHGEF40-207ENST00000556399 FAT3Q8TDW7 4589 aa6.33□□□□□ -1.4
ARHGEF40-207ENST00000556399 KRTAP12-3P60328 96 aa6.26□□□□□ -1.41
ARHGEF40-207ENST00000556399 PKHD1P08F94 4074 aa6.24□□□□□ -1.41
ARHGEF40-207ENST00000556399 KIAA1109Q2LD37 5005 aa6.19□□□□□ -1.42
ARHGEF40-207ENST00000556399 PKD1P98161 4303 aa6.19□□□□□ -1.42
ARHGEF40-207ENST00000556399 KRTAP17-1Q9BYP8 105 aa6.18□□□□□ -1.42
ARHGEF40-207ENST00000556399 RYR3Q15413 4870 aa6.13□□□□□ -1.43
ARHGEF40-207ENST00000556399 RYR2Q92736 4967 aa6.09□□□□□ -1.43
ARHGEF40-207ENST00000556399 SPRR2GQ9BYE4 73 aa6.08□□□□□ -1.44
ARHGEF40-207ENST00000556399 LRP2P98164 4655 aa6.07□□□□□ -1.44
ARHGEF40-207ENST00000556399 PKHD1L1Q86WI1 4243 aa6.05□□□□□ -1.44
ARHGEF40-207ENST00000556399 HSPG2P98160 4391 aa5.99□□□□□ -1.45
ARHGEF40-207ENST00000556399 MT1HP80294 61 aa5.99□□□□□ -1.45
ARHGEF40-207ENST00000556399 MT2AP02795 61 aa5.96□□□□□ -1.46
ARHGEF40-207ENST00000556399 KMT2CQ8NEZ4 4911 aaKnown RBP5.94□□□□□ -1.46
ARHGEF40-207ENST00000556399 CRCT1Q9UGL9 99 aa5.93□□□□□ -1.46
ARHGEF40-207ENST00000556399 TNXBP22105 4242 aa5.92□□□□□ -1.46
ARHGEF40-207ENST00000556399 MT1FP04733 61 aa5.91□□□□□ -1.46
ARHGEF40-207ENST00000556399 LPAP08519 4548 aa5.86□□□□□ -1.47
ARHGEF40-207ENST00000556399 KRTAP8-1Q8IUC2 63 aa5.86□□□□□ -1.47
ARHGEF40-207ENST00000556399 KRTAP19-1Q8IUB9 90 aa5.84□□□□□ -1.47
ARHGEF40-207ENST00000556399 SPRR5A0A1B0GTR4 108 aa5.78□□□□□ -1.48
ARHGEF40-207ENST00000556399 HERC2O95714 4834 aa5.72□□□□□ -1.49
ARHGEF40-207ENST00000556399 KRTAP19-5Q3LI72 72 aa5.69□□□□□ -1.5
ARHGEF40-207ENST00000556399 KRTAP19-8Q3LI54 63 aa5.67□□□□□ -1.5
ARHGEF40-207ENST00000556399 KRTAP19-2Q3LHN2 52 aa5.65□□□□□ -1.51
ARHGEF40-207ENST00000556399 LCE3CQ5T5A8 94 aa5.65□□□□□ -1.51
ARHGEF40-207ENST00000556399 KRTAP10-7P60409 375 aaPredicted RBP5.64□□□□□ -1.51
ARHGEF40-207ENST00000556399 MT1XP80297 61 aa5.61□□□□□ -1.51
ARHGEF40-207ENST00000556399 LCE2CQ5TA81 110 aa5.59□□□□□ -1.51
ARHGEF40-207ENST00000556399 KRTAP10-5P60370 271 aa5.58□□□□□ -1.52
ARHGEF40-207ENST00000556399 MUC17Q685J3 4493 aa5.57□□□□□ -1.52
ARHGEF40-207ENST00000556399 MT1BP07438 61 aa5.56□□□□□ -1.52
ARHGEF40-207ENST00000556399 KRTAP9-8Q9BYQ0 159 aa5.53□□□□□ -1.52
ARHGEF40-207ENST00000556399 FLGP20930 4061 aaPredicted RBP5.52□□□□□ -1.53
ARHGEF40-207ENST00000556399 HERC1Q15751 4861 aa5.48□□□□□ -1.53
ARHGEF40-207ENST00000556399 EPPK1P58107 5090 aaKnown RBP5.44□□□□□ -1.54
ARHGEF40-207ENST00000556399 ABCA13Q86UQ4 5058 aa5.41□□□□□ -1.54
ARHGEF40-207ENST00000556399 SPRR2FQ96RM1 72 aa5.38□□□□□ -1.55
ARHGEF40-207ENST00000556399 BIRC6Q9NR09 4857 aa5.38□□□□□ -1.55
ARHGEF40-207ENST00000556399 KRTAP19-4Q3LI73 84 aa5.35□□□□□ -1.55
ARHGEF40-207ENST00000556399 KRTAP9-3Q9BYQ3 159 aa5.34□□□□□ -1.55
ARHGEF40-207ENST00000556399 PCLOQ9Y6V0 5065 aa5.33□□□□□ -1.56
ARHGEF40-207ENST00000556399 KRTAP4-8A0A0G2JLE6 195 aa5.29□□□□□ -1.56
ARHGEF40-207ENST00000556399 KRTAP4-8Q9BYQ9 185 aa5.29□□□□□ -1.56
ARHGEF40-207ENST00000556399 MUC2Q02817 5179 aa5.16□□□□□ -1.58
ARHGEF40-207ENST00000556399 HMCN2Q8NDA2 5059 aa5.15□□□□□ -1.59
ARHGEF40-207ENST00000556399 KRTAP4-7Q9BYR0 210 aa5.1□□□□□ -1.59
ARHGEF40-207ENST00000556399 LCE2BO14633 110 aa5.1□□□□□ -1.59
ARHGEF40-207ENST00000556399 FAT4Q6V0I7 4981 aa5.09□□□□□ -1.6
ARHGEF40-207ENST00000556399 RNF213Q63HN8 5207 aa5.08□□□□□ -1.6
ARHGEF40-207ENST00000556399 MT1GP13640 62 aa5.07□□□□□ -1.6
ARHGEF40-207ENST00000556399 SPRR2EP22531 72 aa5.07□□□□□ -1.6
ARHGEF40-207ENST00000556399 SPRR2BP35325 72 aa5.07□□□□□ -1.6
ARHGEF40-207ENST00000556399 SPRR2AP35326 72 aa5.07□□□□□ -1.6
ARHGEF40-207ENST00000556399 KRTAP12-4P60329 112 aa5.04□□□□□ -1.6
ARHGEF40-207ENST00000556399 UBR4Q5T4S7 5183 aa5.03□□□□□ -1.6
ARHGEF40-207ENST00000556399 MT1LQ93083 61 aa5□□□□□ -1.61
ARHGEF40-207ENST00000556399 LCE3BQ5TA77 95 aa4.98□□□□□ -1.61
ARHGEF40-207ENST00000556399 MT1EP04732 61 aa4.95□□□□□ -1.62
ARHGEF40-207ENST00000556399 SPRR2DP22532 72 aa4.92□□□□□ -1.62
ARHGEF40-207ENST00000556399 KRTAP19-7Q3SYF9 63 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms